capn5a (capn5,LOC100709916,LOC102310670,LOC106535735)


Basic Information

Item Value
gene id capn5a
gene name capn5,LOC100709916,LOC102310670,LOC106535735
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11813279 ~ 11865934 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787145.1
CCGCACTTGAAGGCATCATAGAGTGATAAGAAGGCGGGGAgctcctcctgtgtgtgtgtgtgtgtgtgttactttgaCGGTTGTAAACTAACTAAACTCCGGCTGACAAcggagagagggatagagagagagagagaaagagagggaagaggGAATTAAAAGGCAGAAATCCTCccgggagaagagagagagagagagggagcagcaCCGTGAGCCACCCGGGGACCAACTGACATTTAAACCAACGTTTCtccagGGGGCATGGTGGTCCCGTACGAGGGCCAGTGTTTCTCCACCCTGAGGAGGCAGTGCCAGCAGAATGGACGTCTGTTCGAAGACCCGCTGTTCCCCGCGTCCGACCAGTCGCTGTTCTACCAGAGGAACAGCATCGGCACGGTCACCTGGAAAAGGCCTAAGGAGATAGCCAGCAACCCCCATCTGTTTGTGGACGGCATCAGTGCCCACGACCTGCACCAAGGCCAGCTGGGAAACTGCTGGTTCGTCGCCGCCTGCTCCAGCCTGGCCTCCATAGAGACACTATGGCAGAAgGTGATCCCCGACTGGAAGGACCAGGAGTGGAACGACGATAAACCGGAGTCCTACGCCGGGATCTTCCACTTCCGGTTCTGGCGGTTCGGCGAGTGGGTGGACGTGGTGATCGATGACCGGCTGGCCACGGTGAACGGAAAGCTGGTGTACTGCCACTCCAACGACAGCAACGAGTTCTGGAGCGCGCTGGTGGAGAAGGCCTACGCCAAGATGTCTGGATGCTACGAGGCGCTCGACGGGGGCAACACGGCCGACGCTCTCGTGGATTTCACCGGCGGCGTGTCGGAGCCGATGGACTTGATGGAGAACGGCTTCAAAGAGGACCAGGAGAAACGCAGCAAGCTGTTCGAGAGGGTCCTGAAAGTCCACGACAGAGGAGGCCTCATCAGCTGCTCGATCCGGGCAACCACCGCAGCGGACATGGAGGCCAGGCTGGACTGCGGCCTGGTGAAGGGCCACGCCTACGCAGTGACGGACGTCCGCAGGGTGAGGCTCGGCCACGGCCTGCTGGCCTTCTTCAAGTCAGACAAGCTCACCATGATCCGCATGAGAAACccctggggagagagagagtggaacGGGGCCTGGAGCGACAGcTCTGAAGAGTGGAAGAAGGTCAGTAAGAGTGAGAGGGAGAAGATCGGTGTCACCGTGCAGGATGATGGAGAGTTCTGGATGACATTCGATGACTTCATCGCTAACTTCACAGACCTCATCCTGTGTCGTCTCATCAACACGTCCCACCTGAGCTTCCATAAGATCTGGGAGGAGGCCGTGATGCGGGGCTCCTGGCGCCGCCACGACGACCCGCTTCTCAACCGAGCCGGCGGCTGCAGCAACAACAAGCACACCTTCCTCCAGAACCCGCAGTATGTGTTTGATGTGAAGAAGCCCGAGGACGAGGTCCTGATCTGTCTGCAGCAGAAAGATCGCAGAGCCACGCTGAGGGAGGGACGAGGAGAGAACCTGGCCATCGGCTTCGACATACACAGGGTGGAGTTGAACAGGACCTACCGTATGCATGTCACCCAGCAGAAGGTTGGTGGGAGCGTCTTCATCAACTCAAGGTCTGTGTTCAAACGCATTGAACTGAAAGAGGGCCGCTACGTCATCATACCCACGACCTTTGACCCCGGCCTGGAGGGAGAATACCTGCTCCGCACCTTCACCGATGTGCCGTCCGACTGCAAGGAGTTGACTCTACATGAGCCTCGACAGACCTGCTGGTCCGGGTTGTGTGGTTTTCCGTCTCTGGTCACTCAGGTCCACATCGTGGCGGCTAATGGACTCGCAGGACAAGACTCTAATGGAGcgTCGGACCCCTACGTGATAATTCGTTGCGAAGGACAGAAAGTTCGTTCTCCGGTCCACAAAAACACACGCAGCCCTGACTTCGACACCAAGGGGATCTTCTACAGGAAGAAAGCCaaccagccaatcagcatcgagATCTACAACCACAACGTGCTGATGGACTCCTTCCTGGGTCAGGTGACGCTGCCGGCCCAGCAAGGCGACTTCCAGCAGACGCTCCACCTGAGGGACAAGGGCGATCGCCGCGACAACGACCTGCCCGGGACCATCACCGTCGTCATGGTGACCAGCACGGTGCTCACCAGCATCTGAGACGCGCCCCAGAAATCCGTCCAGTCAGCTATAAAGTTTACCAAATTAAGTTTACCCTC

Function

symbol description
capn5 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Located in cell surface. Implicated in neovascular inflammatory vitreoretinopathy.

NR:

description
PREDICTED: calpain-5

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K08574 CAPN5; calpain-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787145.1 True 2234 mRNA 0.58 13 11813279 11865934

Neighbor

gene id symbol gene type direction distance location
pak1 pak1,LOC100698864,LOC101483196 coding downstream 20078 11699899 ~ 11793201 (-)
gdpd4a LOC102208771,LOC101483676,LOC102301321,LOC100692992,LOC103373497 coding downstream 170337 11620671 ~ 11642942 (-)
LOC120547527 LOC103361823,LOC107379843,LOC108244675 coding downstream 311939 11496172 ~ 11501340 (-)
si:cabz01090165.1 LOC100707198,LOC102192222 coding downstream 1245888 10493115 ~ 10567391 (-)
LOC120574326 NA coding downstream 1460440 10342382 ~ 10352839 (-)
dcun1d5 LOC106964839,LOC103138233,LOC106911103,LOC103475081,LOC108248937,LOC103377933 coding upstream 21555 11887489 ~ 11906289 (-)
LOC120550316 NA coding upstream 120481 11986415 ~ 12006431 (-)
ints4 ints4 coding upstream 212272 12078206 ~ 12099187 (-)
LOC120550222 NA coding upstream 240335 12106269 ~ 12114449 (-)
LOC120550388 NA coding upstream 332169 12198103 ~ 12199664 (-)
G16383 NA non-coding downstream 903 11809923 ~ 11812376 (-)
G16380 NA non-coding downstream 93037 11710848 ~ 11720242 (-)
G16377 NA non-coding downstream 117299 11694266 ~ 11695980 (-)
G16366 NA non-coding downstream 201264 11611538 ~ 11612015 (-)
G16356 NA non-coding downstream 218821 11593821 ~ 11594458 (-)
LOC120550567 NA non-coding upstream 174090 12040024 ~ 12067403 (-)
G16435 LOC104947591,LOC103474953,LOC103140701 non-coding upstream 249132 12115066 ~ 12265727 (-)
G16451 NA non-coding upstream 279116 12145050 ~ 12156278 (-)
LOC120550557 NA non-coding upstream 286440 12152374 ~ 12153862 (-)
G16454 NA non-coding upstream 289554 12155488 ~ 12219915 (-)
G16143 LOC103372137,LOC102304476 other downstream 1388509 10373568 ~ 10424770 (-)
LOC120574316 NA other downstream 1482432 10318834 ~ 10330847 (-)
LOC120574297 NA other downstream 1611695 10184003 ~ 10201584 (-)
G16064 NA other downstream 1663708 10140176 ~ 10149571 (-)
G16066 NA other downstream 1674932 10136688 ~ 10138347 (-)
G16407 cul5,LOC101165410,LOC108248946 other upstream 83403 11949337 ~ 11955578 (-)
G16422 NA other upstream 123084 11989018 ~ 12033762 (-)
G16458 NA other upstream 359125 12225059 ~ 12262775 (-)
LOC120554324 NA other upstream 621083 12487017 ~ 12487180 (-)
LOC120554526 NA other upstream 622939 12488873 ~ 12489063 (-)

Expression


Co-expression Network