pak1 (pak1,LOC100698864,LOC101483196)


Basic Information

Item Value
gene id pak1
gene name pak1,LOC100698864,LOC101483196
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11699899 ~ 11793201 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787147.1
TGCCTCGCTAACAATAGCCTGGGATCGCCTGGGATCGGCAAGTTTACTGTTAAAATAACGCAGCCAGGAGGGCGACAGAGCGCAGCGGAGCTCAGCCGAGAGGAGAGAAGAGTTTGCCGAATACATGACACGGTGTGTCCCGGTGTCGGAAATTGTCACTCCACACTCTGGGATTTCCATTTGCAACCGGACGAGTTGGCTGCAGGTTGAAGCTGCCTCTTTGCCTTTCTGTGAGAGGAgcgacacgcacacacacacacacacaacgacgACAACAGGAGCGGCCAGCTGCAGCCTAGCTGAAGATGTCTGATAATGGGGAGGTCGAGGACAAGCCCCCAGCTCCGCCCATGAGGAACACCAGCACCATGATTGGCTCCTGCAACAAGGACCCCGCCCCCCTCAACCACGGCTCCAAGCCCCTCCCGCCCAACCCGgaggacaagaagaagaaagaccGCTCGATCCGATTCATCCTGACGGGAGGAGGCGATAAGAccCAGAAGAAGAAGGAGCGTCCAGAGATTTCTCTGCCGTCTGATTTTGAACACACCATCCATGTCGGCTTTGATGCCGTCACCGGGGAATttactggcatGCCGGAGCAGTGGGCCCGGCTCCTGCAGACATCCAACATCACCAAACTGGAGCAGAAGAAGAATCCTCAGGCCGTCCTCGACGTTTTAAAGTTCTACGACTCAAAAGAAACGGCCAACAGCCAGAAATACATGAGcttcacagATAAAAGTGCCGATGCCTACAGCTCTTCCACCACAACGAGCTCCAAGGCCGTGTCAGAGACGCCCGCCATTGCAACCGTATCCGAGGACGACGACGAAGACGAAGCCGAGCCCCCGCCGGTGATCGCCCCCCGACCGGAGCACACCAAATCTATATACACTCGCTCGGTGATCGAGCCCCTACCTCCTCCTCCGACCAAAGATGCTGCGACCTCGCCCATCTCCCCgccgacagcagcagcagccgccgccgccgctgtccccccctcccctccctccccccctgcAGAAGGAGCTCCCAGCAGCCCCCCCAGCGCGAGCCCGGCCCCCGGGCCCTCTGTGCCCCGCCCCCAGGACAAGACCAGGAAGAAGAAGATGTCGGACGAAGAGATCCTGGAGAAACTACATGTGCTCAGATCTCCCTCTGCTGGGACGATCGTAAGTGTGGGAGACCCCAAGAAGAAGTACACGCGCTTTGAGAAGATCGGACAGGGGGCGTCTGGGACGGTGTACACAGCTATAGACATCGCTACAGGACAAGAGgttGCCATTAAACAGATgaacctgcagcagcagccgaaAAAGGAACTGATCATCAATGAGATTCTGGTGATGAGGGAAAATAAGAACCCAAATATAGTCAACTACCTGGACagTTACCTGGTGGGTGACGAGCTGTGGGTGGTGATGGAGTACTTGGCCGGAGGGTCGCTGACCGACGTCGTCACAGAAACCTGCATGGACGAAGCCCAGATCGCTGCCGTGTGCAGAGAGTGTCTCCAGGCGTTGGAGTTCCTCCACTCGAACCAGGTCATCCATCGAGACATTAAGAGCGACAACATCCTGCTGGGCATGGACGGCTCCGTCAAACTCActgACTTTGGCTTCTGCGCCCAGATCACTCCGGAGCAGAGTAAGCGCAGCACCATGGTCGGGACTCCGTACTGGATGGCTCCAGAGGTGGTGACGCGTAAAGCCTACGGCCCCAAAGTGGACATCTGGTCCCTGGGCATCATGGCCATAGAGATGGTGGAGGGGGAGCCGCCCTACCTGAATGAAAATCCACTCAGGGCGCTGTATCTCATAGCAACCAACGGTACGCCGGAGCTGCAGAACCCGGAGAAGCTGTCGACGATATTCAGAGACTTCCTGAACCGATGTCTGGAGATGGACGTGGAGAAGAGAGGGTCGGCCAAAGAGCTGCTgcaggtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgagaccaaCATTATGATCATTATGATTATgagacaatctg
>XM_039787149.1
TGCCTCGCTAACAATAGCCTGGGATCGCCTGGGATCGGCAAGTTTACTGTTAAAATAACGCAGCCAGGAGGGCGACAGAGCGCAGCGGAGCTCAGCCGAGAGGAGAGAAGAGTTTGCCGAATACATGACACGGTGTGTCCCGGTGTCGGAAATTGTCACTCCACACTCTGGGATTTCCATTTGCAACCGGACGAGTTGGAGCGGCCAGCTGCAGCCTAGCTGAAGATGTCTGATAATGGGGAGGTCGAGGACAAGCCCCCAGCTCCGCCCATGAGGAACACCAGCACCATGATTGGCTCCTGCAACAAGGACCCCGCCCCCCTCAACCACGGCTCCAAGCCCCTCCCGCCCAACCCGgaggacaagaagaagaaagaccGCTCGATCCGATTCATCCTGACGGGAGGAGGCGATAAGAccCAGAAGAAGAAGGAGCGTCCAGAGATTTCTCTGCCGTCTGATTTTGAACACACCATCCATGTCGGCTTTGATGCCGTCACCGGGGAATttactggcatGCCGGAGCAGTGGGCCCGGCTCCTGCAGACATCCAACATCACCAAACTGGAGCAGAAGAAGAATCCTCAGGCCGTCCTCGACGTTTTAAAGTTCTACGACTCAAAAGAAACGGCCAACAGCCAGAAATACATGAGcttcacagATAAAAGTGCCGATGCCTACAGCTCTTCCACCACAACGAGCTCCAAGGCCGTGTCAGAGACGCCCGCCATTGCAACCGTATCCGAGGACGACGACGAAGACGAAGCCGAGCCCCCGCCGGTGATCGCCCCCCGACCGGAGCACACCAAATCTATATACACTCGCTCGGTGATCGAGCCCCTACCTCCTCCTCCGACCAAAGATGCTGCGACCTCGCCCATCTCCCCgccgacagcagcagcagccgccgccgccgctgtccccccctcccctccctccccccctgcAGAAGGAGCTCCCAGCAGCCCCCCCAGCGCGAGCCCGGCCCCCGGGCCCTCTGTGCCCCGCCCCCAGGACAAGACCAGGAAGAAGAAGATGTCGGACGAAGAGATCCTGGAGAAACTACATGTGCTCAGATCTCCCTCTGCTGGGACGATCGTAAGTGTGGGAGACCCCAAGAAGAAGTACACGCGCTTTGAGAAGATCGGACAGGGGGCGTCTGGGACGGTGTACACAGCTATAGACATCGCTACAGGACAAGAGgttGCCATTAAACAGATgaacctgcagcagcagccgaaAAAGGAACTGATCATCAATGAGATTCTGGTGATGAGGGAAAATAAGAACCCAAATATAGTCAACTACCTGGACagTTACCTGGTGGGTGACGAGCTGTGGGTGGTGATGGAGTACTTGGCCGGAGGGTCGCTGACCGACGTCGTCACAGAAACCTGCATGGACGAAGCCCAGATCGCTGCCGTGTGCAGAGAGTGTCTCCAGGCGTTGGAGTTCCTCCACTCGAACCAGGTCATCCATCGAGACATTAAGAGCGACAACATCCTGCTGGGCATGGACGGCTCCGTCAAACTCActgACTTTGGCTTCTGCGCCCAGATCACTCCGGAGCAGAGTAAGCGCAGCACCATGGTCGGGACTCCGTACTGGATGGCTCCAGAGGTGGTGACGCGTAAAGCCTACGGCCCCAAAGTGGACATCTGGTCCCTGGGCATCATGGCCATAGAGATGGTGGAGGGGGAGCCGCCCTACCTGAATGAAAATCCACTCAGGGCGCTGTATCTCATAGCAACCAACGGTACGCCGGAGCTGCAGAACCCGGAGAAGCTGTCGACGATATTCAGAGACTTCCTGAACCGATGTCTGGAGATGGACGTGGAGAAGAGAGGGTCGGCCAAAGAGCTGCTgcaggtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgagaccaaCATTATGATCATTATGATTATgagacaatctg
>XM_039787150.1
CTCTCTCAGTCCCTCTCCTTTGCTTCAGCTCTCGGTCGATCaaacattttcctttttgtctttttgtctttttgttgttgccgTTTTCTTTCCGAAATCGACCAGAAGCTGCAAACGCGTTTGTCTGCTAAGGAGCGGCCAGCTGCAGCCTAGCTGAAGATGTCTGATAATGGGGAGGTCGAGGACAAGCCCCCAGCTCCGCCCATGAGGAACACCAGCACCATGATTGGCTCCTGCAACAAGGACCCCGCCCCCCTCAACCACGGCTCCAAGCCCCTCCCGCCCAACCCGgaggacaagaagaagaaagaccGCTCGATCCGATTCATCCTGACGGGAGGAGGCGATAAGAccCAGAAGAAGAAGGAGCGTCCAGAGATTTCTCTGCCGTCTGATTTTGAACACACCATCCATGTCGGCTTTGATGCCGTCACCGGGGAATttactggcatGCCGGAGCAGTGGGCCCGGCTCCTGCAGACATCCAACATCACCAAACTGGAGCAGAAGAAGAATCCTCAGGCCGTCCTCGACGTTTTAAAGTTCTACGACTCAAAAGAAACGGCCAACAGCCAGAAATACATGAGcttcacagATAAAAGTGCCGATGCCTACAGCTCTTCCACCACAACGAGCTCCAAGGCCGTGTCAGAGACGCCCGCCATTGCAACCGTATCCGAGGACGACGACGAAGACGAAGCCGAGCCCCCGCCGGTGATCGCCCCCCGACCGGAGCACACCAAATCTATATACACTCGCTCGGTGATCGAGCCCCTACCTCCTCCTCCGACCAAAGATGCTGCGACCTCGCCCATCTCCCCgccgacagcagcagcagccgccgccgccgctgtccccccctcccctccctccccccctgcAGAAGGAGCTCCCAGCAGCCCCCCCAGCGCGAGCCCGGCCCCCGGGCCCTCTGTGCCCCGCCCCCAGGACAAGACCAGGAAGAAGAAGATGTCGGACGAAGAGATCCTGGAGAAACTACATGTGCTCAGATCTCCCTCTGCTGGGACGATCGTAAGTGTGGGAGACCCCAAGAAGAAGTACACGCGCTTTGAGAAGATCGGACAGGGGGCGTCTGGGACGGTGTACACAGCTATAGACATCGCTACAGGACAAGAGgttGCCATTAAACAGATgaacctgcagcagcagccgaaAAAGGAACTGATCATCAATGAGATTCTGGTGATGAGGGAAAATAAGAACCCAAATATAGTCAACTACCTGGACagTTACCTGGTGGGTGACGAGCTGTGGGTGGTGATGGAGTACTTGGCCGGAGGGTCGCTGACCGACGTCGTCACAGAAACCTGCATGGACGAAGCCCAGATCGCTGCCGTGTGCAGAGAGTGTCTCCAGGCGTTGGAGTTCCTCCACTCGAACCAGGTCATCCATCGAGACATTAAGAGCGACAACATCCTGCTGGGCATGGACGGCTCCGTCAAACTCActgACTTTGGCTTCTGCGCCCAGATCACTCCGGAGCAGAGTAAGCGCAGCACCATGGTCGGGACTCCGTACTGGATGGCTCCAGAGGTGGTGACGCGTAAAGCCTACGGCCCCAAAGTGGACATCTGGTCCCTGGGCATCATGGCCATAGAGATGGTGGAGGGGGAGCCGCCCTACCTGAATGAAAATCCACTCAGGGCGCTGTATCTCATAGCAACCAACGGTACGCCGGAGCTGCAGAACCCGGAGAAGCTGTCGACGATATTCAGAGACTTCCTGAACCGATGTCTGGAGATGGACGTGGAGAAGAGAGGGTCGGCCAAAGAGCTGCTgcaggtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgagaccaaCATTATGATCATTATGATTATgagacaatctg
>XM_039787151.1
TGCCTCGCTAACAATAGCCTGGGATCGCCTGGGATCGGCAAGTTTACTGTTAAAATAACGCAGCCAGGAGGGCGACAGAGCGCAGCGGAGCTCAGCCGAGAGGAGAGAAGAGTTTGCCGAATACATGACACGGTGTGTCCCGGTGTCGGAAATTGTCACTCCACACTCTGGGATTTCCATTTGCAACCGGACGAGTTGGCTGCAGGTTGAAGCTGCCTCTTTGCCTTTCTGTGAGAGGAgcgacacgcacacacacacacacacaacgacgACAACAGGAGCGGCCAGCTGCAGCCTAGCTGAAGATGTCTGATAATGGGGAGGTCGAGGACAAGCCCCCAGCTCCGCCCATGAGGAACACCAGCACCATGATTGGCTCCTGCAACAAGGACCCCGCCCCCCTCAACCACGGCTCCAAGCCCCTCCCGCCCAACCCGgaggacaagaagaagaaagaccGCTCGATCCGATTCATCCTGACGGGAGGAGGCGATAAGAccCAGAAGAAGAAGGAGCGTCCAGAGATTTCTCTGCCGTCTGATTTTGAACACACCATCCATGTCGGCTTTGATGCCGTCACCGGGGAATttactggcatGCCGGAGCAGTGGGCCCGGCTCCTGCAGACATCCAACATCACCAAACTGGAGCAGAAGAAGAATCCTCAGGCCGTCCTCGACGTTTTAAAGTTCTACGACTCAAAAGAAACGGCCAACAGCCAGAAATACATGAGcttcacagATAAAAGTGCCGATGCCTACAGCTCTTCCACCACAACGAGCTCCAAGGCCGTGTCAGAGACGCCCGCCATTGCAACCGTATCCGAGGACGACGACGAAGACGAAGCCGAGCCCCCGCCGGTGATCGCCCCCCGACCGGAGCACACCAAATCTATATACACTCGCTCGGTGATCGAGCCCCTACCTCCTCCTCCGACCAAAGATGCTGCGACCTCGCCCATCTCCCCgccgacagcagcagcagccgccgccgccgctgtccccccctcccctccctccccccctgcAGAAGGAGCTCCCAGCAGCCCCCCCAGCGCGAGCCCGGCCCCCGGGCCCTCTGTGCCCCGCCCCCAGGACAAGACCAGGAAGAAGAAGATGTCGGACGAAGAGATCCTGGAGAAACTACGGACGATCGTAAGTGTGGGAGACCCCAAGAAGAAGTACACGCGCTTTGAGAAGATCGGACAGGGGGCGTCTGGGACGGTGTACACAGCTATAGACATCGCTACAGGACAAGAGgttGCCATTAAACAGATgaacctgcagcagcagccgaaAAAGGAACTGATCATCAATGAGATTCTGGTGATGAGGGAAAATAAGAACCCAAATATAGTCAACTACCTGGACagTTACCTGGTGGGTGACGAGCTGTGGGTGGTGATGGAGTACTTGGCCGGAGGGTCGCTGACCGACGTCGTCACAGAAACCTGCATGGACGAAGCCCAGATCGCTGCCGTGTGCAGAGAGTGTCTCCAGGCGTTGGAGTTCCTCCACTCGAACCAGGTCATCCATCGAGACATTAAGAGCGACAACATCCTGCTGGGCATGGACGGCTCCGTCAAACTCActgACTTTGGCTTCTGCGCCCAGATCACTCCGGAGCAGAGTAAGCGCAGCACCATGGTCGGGACTCCGTACTGGATGGCTCCAGAGGTGGTGACGCGTAAAGCCTACGGCCCCAAAGTGGACATCTGGTCCCTGGGCATCATGGCCATAGAGATGGTGGAGGGGGAGCCGCCCTACCTGAATGAAAATCCACTCAGGGCGCTGTATCTCATAGCAACCAACGGTACGCCGGAGCTGCAGAACCCGGAGAAGCTGTCGACGATATTCAGAGACTTCCTGAACCGATGTCTGGAGATGGACGTGGAGAAGAGAGGGTCGGCCAAAGAGCTGCTgcaggtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgagaccaaCATTATGATCATTATGATTATgagacaatctg

Function

symbol description
pak1 Enables identical protein binding activity and protein kinase activity. Acts upstream of with a positive effect on Wnt signaling pathway involved in dorsal/ventral axis specification and canonical Wnt signaling pathway. Acts upstream of or within animal organ development and convergent extension. Predicted to be active in cytoplasm. Is expressed in several structures, including axial mesoderm; cardiovascular system; nervous system; neural tube; and pectoral fin. Human ortholog(s) of this gene implicated in breast cancer; renal cell carcinoma; and schizophrenia. Orthologous to human PAK1 (p21 (RAC1) activated kinase 1).

NR:

description
PREDICTED: serine/threonine-protein kinase PAK 1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04409 PAK1; p21-activated kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787147.1 True 2023 mRNA 0.57 16 11699899 11793201
XM_039787149.1 False 1943 mRNA 0.57 15 11699899 11793201
XM_039787150.1 False 1877 mRNA 0.57 15 11699899 11743482
XM_039787151.1 False 1999 mRNA 0.57 15 11699899 11793201

Neighbor

gene id symbol gene type direction distance location
gdpd4a LOC102208771,LOC101483676,LOC102301321,LOC100692992,LOC103373497 coding downstream 56957 11620671 ~ 11642942 (-)
LOC120547527 LOC103361823,LOC107379843,LOC108244675 coding downstream 198559 11496172 ~ 11501340 (-)
si:cabz01090165.1 LOC100707198,LOC102192222 coding downstream 1132508 10493115 ~ 10567391 (-)
LOC120574326 NA coding downstream 1347060 10342382 ~ 10352839 (-)
LOC120551206 NA coding downstream 1357241 10257611 ~ 10342658 (-)
capn5a capn5,LOC100709916,LOC102310670,LOC106535735 coding upstream 20078 11813279 ~ 11865934 (-)
dcun1d5 LOC106964839,LOC103138233,LOC106911103,LOC103475081,LOC108248937,LOC103377933 coding upstream 94288 11887489 ~ 11906289 (-)
LOC120550316 NA coding upstream 193214 11986415 ~ 12006431 (-)
ints4 ints4 coding upstream 285005 12078206 ~ 12099187 (-)
LOC120550222 NA coding upstream 313068 12106269 ~ 12114449 (-)
G16377 NA non-coding downstream 3919 11694266 ~ 11695980 (-)
G16366 NA non-coding downstream 87884 11611538 ~ 11612015 (-)
G16356 NA non-coding downstream 105441 11593821 ~ 11594458 (-)
G16355 NA non-coding downstream 106242 11592116 ~ 11593657 (-)
LOC120550111 NA non-coding downstream 109683 11586874 ~ 11590216 (-)
G16383 NA non-coding upstream 16722 11809923 ~ 11812376 (-)
G16402 NA non-coding upstream 51735 11844936 ~ 11853130 (-)
LOC120550567 NA non-coding upstream 246823 12040024 ~ 12067403 (-)
G16435 LOC104947591,LOC103474953,LOC103140701 non-coding upstream 321865 12115066 ~ 12265727 (-)
G16451 NA non-coding upstream 351849 12145050 ~ 12156278 (-)
G16143 LOC103372137,LOC102304476 other downstream 1275129 10373568 ~ 10424770 (-)
LOC120574316 NA other downstream 1369052 10318834 ~ 10330847 (-)
LOC120574297 NA other downstream 1498315 10184003 ~ 10201584 (-)
G16064 NA other downstream 1550328 10140176 ~ 10149571 (-)
G16066 NA other downstream 1561552 10136688 ~ 10138347 (-)
G16407 cul5,LOC101165410,LOC108248946 other upstream 156136 11949337 ~ 11955578 (-)
G16422 NA other upstream 195817 11989018 ~ 12033762 (-)
G16458 NA other upstream 431858 12225059 ~ 12262775 (-)
LOC120554324 NA other upstream 693816 12487017 ~ 12487180 (-)
LOC120554526 NA other upstream 695672 12488873 ~ 12489063 (-)

Expression


Co-expression Network