LOC120550300 (LOC107727921,LOC103377937,LOC107661103,LOC100710678,LOC101484592)


Basic Information

Item Value
gene id LOC120550300
gene name LOC107727921,LOC103377937,LOC107661103,LOC100710678,LOC101484592
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12010676 ~ 12031804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787153.1
CGTCACTGCGCGCTGTCGTTAGGTGGGGCGGGGGCCGTGTTGTTGCTATCGTCTTGCGGGGGGACGCGAAGACTCTTTCACACCATTCAGATTTGGATTAGCTGAACCACGGATAACATTTATATCATCAACTCCGTAAAGGATCCCGCTGTTTGCCATCTCGAGTCAACATGGGGAGCTGTTTAACTGTGGGGCCGAACGAAGCTCTGGTGGTCTCCGGTGGTTGTTGTGGCTCTGATACAAAGACCTACGCTGTGGGAGGCTGGGCCTGGGCTTGGTGTCTCATCTCGGACACTCAGAGGATAACCCTGGAGATCATGACTCTGCAGCCCCGATGTGAGGACGTGGAGACAGCAGAGGGGGTAGCCATCACGGTCACAGGTGTGGCTCAGGTGAAAGTCATGACGGAGCATGACTTACTGGCAGTGGCTTGTGAGCAGTTCCTGGGTAAATCGGTCATGGAAATCAAAGCTGTGGTTCTGCAGACTTTGGAGGGACATCTGCGCTCCATTCTAGGTACCTTGACTGTAGAGCAGATCTatcaggacagagaccagttcGCTAAACTGGTGAGGGAGGTAGCAGCTCCCGACGTGGGCAGGATGGGCATCGAGATTCTCAGCTTTACCATCAAGGATGTGTACGATAAACTGGATTACCTGAGCTCCCTGGGGAAGACCCAGACTGCAGCCGTCCAGAGGGACGCAGACATCGGCGTGGCTGAGGCAGAGAGGGATGCTGGGATACGGGAAGCCGAGTGTAAGAAGGAGATGATGCACGTCAAATTCCAGGCTGACACCAAGATGGCCGATTCCAAACGAGAACTGGAGCTGCAGAAAGCTAATTTCAACCAGGAAGTCAACACTAAGaaagcgGAGGCCCAGCTGGCGTACGAGCTGCAGGCAGCCAAGGAGCAGCAGAAGATCTGCCTGGAGGAGATTGAGATCGAAGTGGTGCAGAGGAAGAAGCAGATCACCATTGAGGAGAGGGAGATCGAGCGGACAGACAAGGAGCTCATCGCCACAGTCAAGAGGCCCGCTGAGGCAGAGGCCTACAAAATGCAGCAGCTGGCCGAGGGGCAGAAGACGAAGACGGTGCTGATAGCTCAGGCTCAGGCCGAAAAGATCAGGAAGATCGGCGAGGCGGAGGCTTCCTCCATCGAGGCCGTGGGCAAGGCGGAGGCTGAGAAGATGAGACTGAAGGCTGAGGCCTACCAGCAGTACGGAGAGGCAGCTAAGACCGCCCTGGTCCTGGAGGCCCTGCCTAAGATTGCTTCCAAGGTGGCTGCGCCATTAGCCAAGACCAATGAGATCGTCATGCTCAGTGGGGACGGCAACCGGCTGACCAGCGAGGTCAACCGCCTGTTGGCTGAACTTCCTGTGTCAGTCAACGCTCTCACTGGAGTGGATTTGTCAAAGATCCCGTTGCTGCAGAAGATGACCGGTGCTCAAGCCTGAAAGCCGACTCCTCCACACGACTCCAGTATCTCTCGTATGCACTCTGATAGACTGCCTTTAATACACTTGAagaattttgttgttttatacGTATATACTGTAAACCAAGTGGATTTTTGGAAACCTCTGGTGCCTTACTTTACACAGGGCCAGAATATCTGCATGCACTGCTGCTcattcaaagattttttttattttgtgttaacATGGGAacattttgtgttgtgtttttatccaggttatattaataataacaccTAAATCTTCTGTATTTATACATTGAGGGTCCGGCTTTCACTTTTTACACTCCGTACGTCGCAGGCCTTTGTCGTTTTATATACCTCTTTCTTTATCGTTAGACACATCTGCATTCCCTAGAGAACATTAATCTTTTTCTCGTGGAGCTTTTCTTTGTATTCTACATGTTGTAATATTTAACGATTTGTTATTTTGGGTCACTGATTGATTCTTACAATGCAACAGGTGCTCAAAATCTTAAAAGAAGCCCCCTCTCATTGTGCAAAGTGTGTCTGTTCCCCTGAAATAAGTTTAATTGTCAACAAACTGTTGATGTCAGGCATAATACATATGCTTATCATTGACATGTTGGCAGGAAAACGGGAAGAAAAATCTGATCTTGTGCTGATATGGTTAGCTTGTAGCGTGTTCCTTTTAATATTTAGTGGAAAACTGTTAGTAGTTTCGGCCTAGATCAAGAGTCtgtgttaaaaagaaagaaagaatgaggGGCAAACTGTACGAAAGGCCGAACAGCGATGCCAAATAGAATAGGTTGTCTTTTAATTAGTCGTATTGTCGTTATCAGAAGGATTTTGGGATACTGTACAGTTTATCTGATGTGTAATTTCATACCACAAATACCTGTAGATGCTAAGTCACGTTCGACAGGGTGCGtcaaacaaaccaaactccTACActttacacagaaacacacttttCTGTTCAATGTTTGCACACGTTTgcattgatttgtttttaataactgtgacataaaaaaaatagaaggaCCTTTTAGCACTTTGTGTGTGCGCTTTAACTTATCAAAcaatttttgtctgtttttaaatcagTGATATTGCtgtttgtaaatgtttttggGGGTCCAAAGCACCAAATGTTAAAAAGGGAGAGTTCAGATGTTTAGAAGTGTGGTTGTAGGAGCCACTTCTCCATAGTCAGCGTGTTAGCTACAGTACATGCTGCTAAATGTCATTTTGCCTCAGAACCAAAGGGAGTTGCTTGTCTACCACTGCCTCCACCGGTTAGtaagttagttagttattgTGTGTCTTAACTGAATGCGAACTAACAACTTTCAAACACCAAAGTCGCTCATTAACGCAGACTAACTAAccgatggaggcagcggtagagcagcaactcccgtgtCCTGCAAGGTAAAAATGACTGttgtctggtggctttgaagagagcagagataacgggTCGTAATAGGCTGTCTGACAGCGAggtgtgaaaatattctaaatatagcgtatagacagacagatattaGGTGTCTAAACTAGAGacggtccgataccattttttgcttcccgataccgattccgatacctgaacttgcgtatcggccgataccgagtaccgatctgataccagtgtgtcata

Function

NR:

description
PREDICTED: flotillin-2 isoform X1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787153.1 True 3107 mRNA 0.47 11 12010676 12031804

Neighbor

gene id symbol gene type direction distance location
LOC120550284 LOC106522765 coding upstream 37496 11957896 ~ 11973180 (+)
LOC120551249 NA coding upstream 127652 11871928 ~ 11883024 (+)
ompa omp,LOC102310369,LOC101166404,LOC105930201,LOC106535736 coding upstream 177312 11829812 ~ 11833364 (+)
LOC120550461 NA coding upstream 397454 11592428 ~ 11613222 (+)
LOC120550095 NA coding upstream 423415 11580446 ~ 11587261 (+)
LOC120550190 LOC103358193 coding downstream 13811 12045615 ~ 12056544 (+)
aamdc aamdc,LOC102795396 coding downstream 41814 12073618 ~ 12077875 (+)
LOC120550138 NA coding downstream 112495 12144299 ~ 12173696 (+)
LOC120550122 NA coding downstream 187106 12218910 ~ 12235751 (+)
LOC120550477 NA coding downstream 223833 12255637 ~ 12273823 (+)
G16283 NA non-coding upstream 27770 11981140 ~ 11982906 (+)
G16280 NA non-coding upstream 40671 11968194 ~ 11970005 (+)
G16270 NA non-coding upstream 97996 11900041 ~ 11912680 (+)
G16261 NA non-coding upstream 120429 11856351 ~ 11890247 (+)
G16250 NA non-coding upstream 191404 11818880 ~ 11819272 (+)
LOC120550573 NA non-coding downstream 68174 12099978 ~ 12100577 (+)
LOC120550493 NA non-coding downstream 100547 12132351 ~ 12137334 (+)
LOC120550541 NA non-coding downstream 167990 12199794 ~ 12200891 (+)
G16464 NA non-coding downstream 381695 12413499 ~ 12415940 (+)
G16463 NA non-coding downstream 384206 12416010 ~ 12420722 (+)
G16267 NA other upstream 109803 11894504 ~ 11900873 (+)
zgc:101731 LOC106580895,LOC100194580,LOC103372138 other upstream 1505338 10388232 ~ 10505338 (+)
G15712 NA other upstream 2007081 10002250 ~ 10003595 (+)
LOC120551195 NA other upstream 2007304 9866710 ~ 10003372 (+)
G15642 NA other upstream 2342197 9645137 ~ 9668479 (+)
G16467 clns1a,LOC102781126 other downstream 364191 12395995 ~ 12409274 (+)
LOC120552034 LOC104947607 other downstream 410326 12442130 ~ 12456583 (+)
LOC120554522 NA other downstream 598870 12630674 ~ 12630864 (+)
G16590 actn4,LOC102210441 other downstream 837026 12868830 ~ 12922469 (+)
hif1al NA other downstream 1076058 13107862 ~ 13137034 (+)

Expression


Co-expression Network