ompa (omp,LOC102310369,LOC101166404,LOC105930201,LOC106535736)


Basic Information

Item Value
gene id ompa
gene name omp,LOC102310369,LOC101166404,LOC105930201,LOC106535736
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11829812 ~ 11833364 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787163.1
agtgttagaGAGAAATCTGAAACTCTCTCAGAGTCCCATCTATCACAGCATCCATCCAGACAGGCCGGCCTTGCCCTCTCCTAAACCCAGGATTATAACCTTGAAGTCGGACATGGACAACGCCAAAGCCCCCGGCAACACAATAGTGCTGGCGTTTAAAGAAGACACTGCACTGACAGAGATGATGCGTCTCCGCGTGTCGTCTCTGCAGCGCTCGGGGCAGAAGCGCCAGGACGGCGAGCGCCTGCTTCTCTCCCACGAGGCCGTGTATCGGCTGGACTTCCCCACCCAGGAGCTCAACTTCTCTCGCTGGTACTTCTCCCTCAAGGCCTACGGTCGCGTCACCATCACCGGGATCTCCCAGCACTGGACGCCCGACCTCACCAACCTGATGACCCGGCAGCTGCTCGAGCCGATCGGAACGTTTTGGCGAAACGCCAACGACCCGGAGGATTCGCCGCTCAAGTGGCTGGAGGCGGACATGCAGGAGTTCGGCGAAAGGATTGCCGAGCTGGCCAAGGTCAGGAAGGTCATGTACTTCCTGTTTGCTTTCAAGGATGCTGCGGAGGCCGCAAATCTCAGCTGCTCGGTGGAGTTCACAGCAGATTAACGACTCGTCACTCTTTGTCCAGTAGAGTCCTCTTTAGTACTCAAGAAGCACTGCAATAGTTTGTTCAATCTTTGACCTTTTAAAAACATCACACTAGAGCTGAAGAAAAAGAGGCGAGCTGGCCTccattttgtttgacaatacttcgaacgtcaacaagatgTGACGTCACCaaaacatcacttagagcacctttaagactGTAGATCCACCTTCTTGGCCCACATGACGCATTCAAATTTTCCACAGTTCATTCAAACATTTCAGCACAACCTTTTACAATGAACCTCAACAGCCAAGTCAACATTTTATAAGCACTCAACATGCTGTAAAGAAAGTATTTTTCACAAAAcaaagcacacaaaaaaacaacacatagtACGAGATAGAACAAGTATGAAAGCACTTTgtttaaactaaactaaaaagaTCAAAGCATCATCGACAGAAATCAGCAATTTCGATTCGTACAGAAACGCGAGCATTCGTACAAAAAAAGATTCTTTTGACAACATTATGTCATGTTAAAACTTCATAATCGTTTATGGAAATGTTAGAATTCAGAAATGTTGAATACAAAACTTCTGAGGACACAAACTAAACTTCCtcttgtaaataaaaacaggccTTTTTTTTCGGATCagctgaatatcgtgataaTGTGCGTTTGAGTGGTTACTGTCTTTTgctgttgttgtattttgttcCTGAAGTCTTTCGTCGCTCACAGGAGAGGCAAAAACAAGCAGCGCTGAATGCAATATTGAATATTCACATCACATGACTGTCGGCCTACAAACAGAGATCAATGGAGTGAAATCTATTAAAAATCAAATGAAAGCTG

Function

symbol description
omp Predicted to be involved in sensory perception of smell. Predicted to act upstream of or within neurogenesis. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including axon; cytosol; and neuronal cell body.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787163.1 True 1454 mRNA 0.46 2 11829812 11833364

Neighbor

gene id symbol gene type direction distance location
LOC120550461 NA coding upstream 216590 11592428 ~ 11613222 (+)
LOC120550095 NA coding upstream 242551 11580446 ~ 11587261 (+)
kctd14 kctd14 coding upstream 256586 11565261 ~ 11573226 (+)
LOC120554420 NA coding upstream 267408 11562256 ~ 11562404 (+)
LOC120554427 NA coding upstream 269273 11560391 ~ 11560539 (+)
LOC120551249 NA coding downstream 38564 11871928 ~ 11883024 (+)
LOC120550284 LOC106522765 coding downstream 124532 11957896 ~ 11973180 (+)
LOC120550300 LOC107727921,LOC103377937,LOC107661103,LOC100710678,LOC101484592 coding downstream 177312 12010676 ~ 12031804 (+)
LOC120550190 LOC103358193 coding downstream 212251 12045615 ~ 12056544 (+)
aamdc aamdc,LOC102795396 coding downstream 240254 12073618 ~ 12077875 (+)
G16250 NA non-coding upstream 10540 11818880 ~ 11819272 (+)
G16237 NA non-coding upstream 17427 11754374 ~ 11812385 (+)
G16229 NA non-coding upstream 58129 11689220 ~ 11771683 (+)
G16235 NA non-coding upstream 76831 11734398 ~ 11752981 (+)
G16207 NA non-coding upstream 294511 11535088 ~ 11535301 (+)
G16261 NA non-coding downstream 22987 11856351 ~ 11890247 (+)
G16270 NA non-coding downstream 66677 11900041 ~ 11912680 (+)
G16280 NA non-coding downstream 134830 11968194 ~ 11970005 (+)
G16283 NA non-coding downstream 147776 11981140 ~ 11982906 (+)
G16292 NA non-coding downstream 179134 12012498 ~ 12027627 (+)
zgc:101731 LOC106580895,LOC100194580,LOC103372138 other upstream 1324474 10388232 ~ 10505338 (+)
G15712 NA other upstream 1826217 10002250 ~ 10003595 (+)
LOC120551195 NA other upstream 1826440 9866710 ~ 10003372 (+)
G15642 NA other upstream 2161333 9645137 ~ 9668479 (+)
LOC120551159 fam13c other upstream 2176981 9631391 ~ 9652831 (+)
G16267 NA other downstream 61140 11894504 ~ 11900873 (+)
G16467 clns1a,LOC102781126 other downstream 562631 12395995 ~ 12409274 (+)
LOC120552034 LOC104947607 other downstream 608766 12442130 ~ 12456583 (+)
LOC120554522 NA other downstream 797310 12630674 ~ 12630864 (+)
G16590 actn4,LOC102210441 other downstream 1035466 12868830 ~ 12922469 (+)

Expression


Co-expression Network