LOC120550711 (LOC104943185,LOC103361979,LOC102792505)


Basic Information

Item Value
gene id LOC120550711
gene name LOC104943185,LOC103361979,LOC102792505
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29025813 ~ 29073119 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787423.1
aagaaacgagagagagagagaaagagagagagcgctgCGGATTAAgacgttttttttctgtgtgagcGGGTTCCTTCTTGAAGCCATCTATCTGCAGCgtcatttcaagaaaaaaaggtCGCGGCGGTTCACTTTTCGAGCGCATCCAACACTATCTCCCAGCTGCGTTTCACTGATGAACACCAACCGGTGAAGACATGTTGCAGATGTTGAGATAGGCTACATATCTCTATTTGATCTAGATTAGTCTGCCTGAGAGTTACCGTGAAGTCGGCTGGAAATGAACTCTACAGATGCACCTTTGTCTCAGAACATTTATGATAAGAATCAACGCTTCTCCTCCTTTCCCATCCACATGAGAAGTTTGACCGGAGCTGGCTGAAGGGAGGCTGTGTTTCCGATTGGCTGTTTAATCTGTGTAGCTCAAGCATCTGGACCACTGTTTCTCAGCACACTGAGGGTTGCATGCATCAGTGCCAAGAAATTGCATTACATGGGAGACTTCTACTAAggagacacagaaacattacTGAAAGATGGAGGTGGGAGCTGAGCAAGGATGCACACAGGGGAACGGACGCAGTGACGCCGTGGCCAGAGAACCGCGCACCTCTCCCTGCAACAGCTTGAAGATGTTTCTGGTAGCTTTGTCCTTTGCCTATTTTTCAAAGTCTCTGTCGGGGAGCTACATGAAGAGCACAATAACTCAGCTGGAGAGGCGCTTTGACATCCCCAGTTACCTAATAGGTGTCATTGACGGGAGCTTCGAGATAGGTAACCTGTTGGTGATAGCTTTCGTCAGTTACTTTGGGGCCAAGCTCCATCGGCCAAAGATCATCGCAGTGGGTTGTGTACTGATGTCCATCGGCACCTTCGTCATCGCTCTGCCTCACTTCATCATCGGACGCTATGAATTTGAAACATCAGTGCGGTGGGTAGTGAACTCAACACTTAACCCCTCCCCTTGTCCGTTGGGCTCCCCAGCAGACCTGACCCAACATGATAAACTGCCTCAAGTGCCAGCAACAGGTTGTGAAGGCGACTCCAACCTGTCAATGTGGATTTATGTGCTCCTGGGAAATGTCTTGCGGGGGATAGGAGAGACGCCTGTTCAGCCACTCGGGATCTCTTATATAGATGATTATGCTAGTGAGGAAAATGCTGCGCTTTATGTTGGCTGTGTCCAGACCATTTCAGTGGTTGGACCTGTGTTTGGCTACCTGTTAGGCTCCCTTTGTGCCAGAATATATGTGGACATTGGATTTGTAAAAATGGAAACTATCACCATCACCCCAGCAGATGCCCGCTGGGTGGGAGCCTGGTGGTTGGGCTACCTCATAGCTGGGGTCATCACCCTACTCTCTGCCATCCCATTTTGGTTCCTGCCCCGCTCTCTGCCAATACCCGAGCCCCAGGGCCCAGAAAAGACACGCTTTATTAAAGACCCTCTTCTTTTGAAGCACAAGTATCCTGCAGATGAAAATACTACTTTCATAGAGATGGCCAAAGACTTTATTCCAACCCTGCGATCTCTGCTAGGAAACCCTGTGTATTTGATATACCTGTGTGTGACAATCATCCAGCTGAACTCTCTCATCGGCATGGTCACCTACAAGCCTAAGTACATTGAGCAGCACTTCAGGCAGTCTGCCTCAAAGGCCAACTTCCTCATGGGTGTGATCAATATCCCAGCTGTGGCACTGGGTATGTTTTCTGGAGGTCTACTGATGAAGAGGCTGAAGCTGAACATCATGGGAGCCGCCAGGTTTGCCTTCGGAACATCTCTGATCGGTTACATCCTGTCACTGTTCTTCTTCGCAATTAGCTGCGAGAATGCGAAGGTAGCGGGGGTGACACTTTCATACAACAGCATGGATAGGATATCTTATGATACACACTCATTGTTCACAGCATGCAACTCAGACTGTTTTTGTTCAGCAAGTGACTGGGACCCAGTCTGTGGAGAGAATGGCATCACATATGTTTCTCCCTGTCTTGCTGGCTGCACCGGCTCTTCTGGCTCAGGGAAAAACACAGTCTTCTCTAACTGTAGCTGTGTCGGTGTGGCTGGTAACTTTACGGCCAGTACCGGCCAGTGCCCTCATAAGGACGACTGTGACAGGATGTTCCCGTACTTTTTGGCTCTCTCTGTCATCACTTCCTTTATCATCTCCCTTGGGGGCACACCAGGCTACATGTTTCTCATCAGGTGCATCAAACCACAGCTGAAATCTTTGGCGTTGGGTTTCCATGCTCTGTCAACACGTACCCTTGCAGGGATACCAGCACCCATCTACTTTGGAGCAATCATTGACACCACATGTCTAAAATGGGGTCAGAAGAGGTGTGGAGGCATAGGAGCCTGTAGAATCTACAACACCACTGCATACAGGATAGCATACCTGGGTCTGACTCTGAGCCTGCGGACTATCTCATTCATTATTTGCATCCCGGGCTTCATTTTGCTCAGTCGACAGCtgaagaaggaagaaagaaatgccATCCACGGAGCGCTGGCCAACGGCGGAACAGAGCTGGAGGCACTGAGGAAGGAAGAGTTTGTGATTTCTAATTCTGACAACAGCACAGCCAGGGAGACACGGctgtgaccccccccccccacacacacacacacacacacacacacaaatacaaccaTAGACGGTCATATACACCCACAGTATGTACAGAGTGATACTgtacacatgcgcacacactcAAATGAGATTTGCAGGGAATCACATGTTGTATCCGATCATCTCGTATAAAGCATAAATTCTATATTTGTACACTGGTTGTGAAGGCTTTGTGAATTTAACAGGAAGTTTGATATAACTGAAATATTTCTTGAATGTACATGCTGttattgtttttcttattaATACAAGTATAACAATATGTTTATGGTTTTAATGGTGGCACAATCAGATGGGAAATGTGACTTGTGCAGACTAATACAAACATAGTATAATTCTGAAAACCAGCACATAGACTGCCTCTTTGAAGGCAGTCTATAAGTTTTTCTTGCTGACATCACAAGAGCAGAAGTGGCCTTATAAACCAGAGGCACAATACTAAATTTAAACAATGAACTATAATTAAGACGAGGAAAATTAAGCATCCAAAGAGAAAGGAGGTGAGGATTCTTTTCCCCGGAATTTAAATAGAAAAGATAAACaggttgttgtggaaatatgtCTGTGAACGTGTATTTCAGTGACTTTTAGAAGGCTTGACAGTTGTTGATTTGACGTATGTGCCTCATTTACTCAACAGTTACCTCTAAATCATGTCTCACATTTTAAACAGATATCTGAACAGACTTCTTTTGCTTTTAAATTTCAGACTAAATGAAGTCTTTACACTCACTTAGAAAAACAAGGTTAATTTCTGACTGACGCTTAAACTTTTGTCTTTTACTTTAAGCCCAAAGTCAAGTCTGATTGTATtgcagtttgtgttgtgtgcttTCTGGATGTGAACTTGTTCCTTTGGTAATCATACTCACTAAAAATGGAAATTGTGTTTAAGTGAGATTTGCTTACCTGTTTAGTTTAATCTGTCTAGTGGAGGTTGCTCCATATTTTAATGCTTTTAATCAGCACCAGCCCCAATTAACTCCTAGCTAAATGTGATATTATTAAGGAGAAAAATATTATATCAAGATACACAGCACAATAAACTTTGTCATGACACCGATAGTAAGGATTAGACTGAATTTGCTCAGAATATCTCAATGCACCTCAGCAGGCTCTGGtaataaaaaaagccatttttGTAGAAACAGATGGCTTAGGTGAACGCTTGCTAATGTATCTGCCATGTGTTGTGCCTTGAAAAGTCAGAATTTGTACTGTTGATAAAAGATATACTGTCCGTTGTTCCAGTCTTTAGACAAACGTTACCACCGTGTAAGTATCACCACAGGAAATGTGCATTTGTGTAATTGATGTGTATGTCTGCAGCCATGTTTCACTggtgagtctttttttttttttttgcgtgtaTAAGCTCCTGTGCCAAAACCCATAATATcagttttattttcataaacagcttCATCTCATAA
>XM_039787434.1
CTTCTACTAAggagacacagaaacattacTGAAAGATGGAGGTGGGAGCTGAGCAAGGATGCACACAGGGGAACGGACGCAGTGACGCCGTGGCCAGAGAACCGCGCACCTCTCCCTGCAACAGCTTGAAGGTAACCTGTTGGTGATAGCTTTCGTCAGTTACTTTGGGGCCAAGCTCCATCGGCCAAAGATCATCGCAGTGGGTTGTGTACTGATGTCCATCGGCACCTTCGTCATCGCTCTGCCTCACTTCATCATCGGACGCTATGAATTTGAAACATCAGTGCGGTGGGTAGTGAACTCAACACTTAACCCCTCCCCTTGTCCGTTGGGCTCCCCAGCAGACCTGACCCAACATGATAAACTGCCTCAAGTGCCAGCAACAGGTTGTGAAGGCGACTCCAACCTGTCAATGTGGATTTATGTGCTCCTGGGAAATGTCTTGCGGGGGATAGGAGAGACGCCTGTTCAGCCACTCGGGATCTCTTATATAGATGATTATGCTAGTGAGGAAAATGCTGCGCTTTATGTTGGCTGTGTCCAGACCATTTCAGTGGTTGGACCTGTGTTTGGCTACCTGTTAGGCTCCCTTTGTGCCAGAATATATGTGGACATTGGATTTGTAAAAATGGAAACTATCACCATCACCCCAGCAGATGCCCGCTGGGTGGGAGCCTGGTGGTTGGGCTACCTCATAGCTGGGGTCATCACCCTACTCTCTGCCATCCCATTTTGGTTCCTGCCCCGCTCTCTGCCAATACCCGAGCCCCAGGGCCCAGAAAAGACACGCTTTATTAAAGACCCTCTTCTTTTGAAGCACAAGTATCCTGCAGATGAAAATACTACTTTCATAGAGATGGCCAAAGACTTTATTCCAACCCTGCGATCTCTGCTAGGAAACCCTGTGTATTTGATATACCTGTGTGTGACAATCATCCAGCTGAACTCTCTCATCGGCATGGTCACCTACAAGCCTAAGTACATTGAGCAGCACTTCAGGCAGTCTGCCTCAAAGGCCAACTTCCTCATGGGTGTGATCAATATCCCAGCTGTGGCACTGGGTATGTTTTCTGGAGGTCTACTGATGAAGAGGCTGAAGCTGAACATCATGGGAGCCGCCAGGTTTGCCTTCGGAACATCTCTGATCGGTTACATCCTGTCACTGTTCTTCTTCGCAATTAGCTGCGAGAATGCGAAGGTAGCGGGGGTGACACTTTCATACAACAGCATGGATAGGATATCTTATGATACACACTCATTGTTCACAGCATGCAACTCAGACTGTTTTTGTTCAGCAAGTGACTGGGACCCAGTCTGTGGAGAGAATGGCATCACATATGTTTCTCCCTGTCTTGCTGGCTGCACCGGCTCTTCTGGCTCAGGGAAAAACACAGTCTTCTCTAACTGTAGCTGTGTCGGTGTGGCTGGTAACTTTACGGCCAGTACCGGCCAGTGCCCTCATAAGGACGACTGTGACAGGATGTTCCCGTACTTTTTGGCTCTCTCTGTCATCACTTCCTTTATCATCTCCCTTGGGGGCACACCAGGCTACATGTTTCTCATCAGGTGCATCAAACCACAGCTGAAATCTTTGGCGTTGGGTTTCCATGCTCTGTCAACACGTACCCTTGCAGGGATACCAGCACCCATCTACTTTGGAGCAATCATTGACACCACATGTCTAAAATGGGGTCAGAAGAGGTGTGGAGGCATAGGAGCCTGTAGAATCTACAACACCACTGCATACAGGATAGCATACCTGGGTCTGACTCTGAGCCTGCGGACTATCTCATTCATTATTTGCATCCCGGGCTTCATTTTGCTCAGTCGACAGCtgaagaaggaagaaagaaatgccATCCACGGAGCGCTGGCCAACGGCGGAACAGAGCTGGAGGCACTGAGGAAGGAAGAGTTTGTGATTTCTAATTCTGACAACAGCACAGCCAGGGAGACACGGctgtgaccccccccccccacacacacacacacacacacacacacaaatacaaccaTAGACGGTCATATACACCCACAGTATGTACAGAGTGATACTgtacacatgcgcacacactcAAATGAGATTTGCAGGGAATCACATGTTGTATCCGATCATCTCGTATAAAGCATAAATTCTATATTTGTACACTGGTTGTGAAGGCTTTGTGAATTTAACAGGAAGTTTGATATAACTGAAATATTTCTTGAATGTACATGCTGttattgtttttcttattaATACAAGTATAACAATATGTTTATGGTTTTAATGGTGGCACAATCAGATGGGAAATGTGACTTGTGCAGACTAATACAAACATAGTATAATTCTGAAAACCAGCACATAGACTGCCTCTTTGAAGGCAGTCTATAAGTTTTTCTTGCTGACATCACAAGAGCAGAAGTGGCCTTATAAACCAGAGGCACAATACTAAATTTAAACAATGAACTATAATTAAGACGAGGAAAATTAAGCATCCAAAGAGAAAGGAGGTGAGGATTCTTTTCCCCGGAATTTAAATAGAAAAGATAAACaggttgttgtggaaatatgtCTGTGAACGTGTATTTCAGTGACTTTTAGAAGGCTTGACAGTTGTTGATTTGACGTATGTGCCTCATTTACTCAACAGTTACCTCTAAATCATGTCTCACATTTTAAACAGATATCTGAACAGACTTCTTTTGCTTTTAAATTTCAGACTAAATGAAGTCTTTACACTCACTTAGAAAAACAAGGTTAATTTCTGACTGACGCTTAAACTTTTGTCTTTTACTTTAAGCCCAAAGTCAAGTCTGATTGTATtgcagtttgtgttgtgtgcttTCTGGATGTGAACTTGTTCCTTTGGTAATCATACTCACTAAAAATGGAAATTGTGTTTAAGTGAGATTTGCTTACCTGTTTAGTTTAATCTGTCTAGTGGAGGTTGCTCCATATTTTAATGCTTTTAATCAGCACCAGCCCCAATTAACTCCTAGCTAAATGTGATATTATTAAGGAGAAAAATATTATATCAAGATACACAGCACAATAAACTTTGTCATGACACCGATAGTAAGGATTAGACTGAATTTGCTCAGAATATCTCAATGCACCTCAGCAGGCTCTGGtaataaaaaaagccatttttGTAGAAACAGATGGCTTAGGTGAACGCTTGCTAATGTATCTGCCATGTGTTGTGCCTTGAAAAGTCAGAATTTGTACTGTTGATAAAAGATATACTGTCCGTTGTTCCAGTCTTTAGACAAACGTTACCACCGTGTAAGTATCACCACAGGAAATGTGCATTTGTGTAATTGATGTGTATGTCTGCAGCCATGTTTCACTggtgagtctttttttttttttttgcgtgtaTAAGCTCCTGTGCCAAAACCCATAATATcagttttattttcataaacagcttCATCTCATAA

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 1C1-like isoform X1

GO: NA

KEGG:

id description
K08747 SLCO1C; solute carrier organic anion transporter family, member 1C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787423.1 True 4069 mRNA 0.44 15 29025813 29073119
XM_039787434.1 False 3426 mRNA 0.44 13 29025813 29064567

Neighbor

gene id symbol gene type direction distance location
zgc:172282 LOC102207343,LOC104955165,LOC101486473,LOC108246507,LOC100696252,LOC102793974,LOC102308338 coding downstream 305683 28523771 ~ 28720130 (-)
LOC120551494 NA coding downstream 565434 28437905 ~ 28460379 (-)
zgc:162730 LOC103363970,LOC104955298,LOC104928501 coding downstream 719636 28303035 ~ 28306177 (-)
zgc:114130 NA coding downstream 748994 28271678 ~ 28276819 (-)
bloc1s3 bloc1s3 coding downstream 763022 28260601 ~ 28262791 (-)
LOC120551002 LOC103361980 coding upstream 11847 29084966 ~ 29139262 (-)
gosr1 gosr1 coding upstream 230166 29303285 ~ 29326515 (-)
cpda cpd coding upstream 256249 29329368 ~ 29347423 (-)
cryba1a cryba1,LOC108246057,LOC105936483,LOC103145583,LOC104943196 coding upstream 279206 29352325 ~ 29355341 (-)
foxn1 NA coding upstream 312985 29386104 ~ 29407183 (-)
G20217 NA non-coding downstream 127819 28897035 ~ 28897994 (-)
LOC120550084 NA non-coding downstream 249782 28770134 ~ 28776031 (-)
G20183 NA non-coding downstream 685711 28339752 ~ 28340102 (-)
LOC120549228 NA non-coding downstream 772733 28166022 ~ 28253080 (-)
G20094 NA non-coding downstream 901085 28120715 ~ 28124728 (-)
G20287 NA non-coding upstream 5814 29078933 ~ 29084039 (-)
G20331 NA non-coding upstream 92394 29165513 ~ 29165718 (-)
G20335 NA non-coding upstream 171368 29244487 ~ 29246222 (-)
LOC120573394 NA non-coding upstream 224221 29297340 ~ 29298422 (-)
G20348 LOC104922853,LOC102220912,LOC103367115 non-coding upstream 286323 29359442 ~ 29360927 (-)
cwf19l2 cwf19l2 other downstream 1178265 27824605 ~ 27847548 (-)
G19840 NA other downstream 1936749 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 2555917 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 2579878 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 2691094 26307064 ~ 26334719 (-)
G20417 scarf1 other upstream 374051 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 894310 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 1014616 30087735 ~ 30091711 (-)
cbl cbl other upstream 1081774 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 1495754 30568873 ~ 30618434 (-)

Expression


Co-expression Network