tomt (tomt,LOC104968284,LOC102290535,LOC100705770,LOC103372127,LOC106927839)


Basic Information

Item Value
gene id tomt
gene name tomt,LOC104968284,LOC102290535,LOC100705770,LOC103372127,LOC106927839
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 26861807 ~ 26864008 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787839.1
TTTGGTGCCACTTTCATCTTTATCATCCGCACTGCTGCTCTGCTTTCGCCAACCTTTTTAGAAAACAGCTAGGATGGTGTCGCCTGCTATCGCTCTGGCCTTCATTCCCCTCCTGCTGACAATTATTATCCGGTGCCGCTACTACTTTGTGCTGTTCTATCGGGCGGTCCTGGTCAGGATATGGAAGGACTGTGTTACTGGCCTGAGTCGCGAGGAGCGGGCCTACCAGTATGTTCTCACTCATGCCACCCCTGGAGACCCCGACAGCATCCTGGACGCCTTCGATGTCTGGTGCAGCAAGGTGGAGTTCATCAGCAACATTGGACCtaaaaaagGGAAGATCCTGGACCGACTGCTGATGGAGCAGAGCCCTCTGACAGTGCTGGAGCTGGGTGCCCACTGTGGGTACAGCACTGTGCGGATCGCCCGGTCTTTGCCCCTGGGTGCTAGGCTCTACAGCCTCGAGATGGACGCGAGGAATGCTGTTATCGCTGAGAAAATCATCCGCCTGGCAGGTTTTGACGATGATACGGTGGAGCTCATCGTAAATCCATCTGATGAGGTGATCCCTCTGCTTCGGTCTGACTACGGTTTGGAAAGGCTGGATTTTGTCTTCATGGACCACTGGAAGAAATGCTACCTCCCTGATCTGCAGATGCTGGAAGGCTCTGGTCTGCTGGGAAAAGGGTCTATGATCGTGGCTGACAACGTGCTGTTCCCCGGGGCTCCAAAGTTCCTCAGATACATTCGCAAGAGCGGCCTGTATGAGTGGAAGGTCCATCGGGCCACACTAGAGTACAGCAAAGGCATCCGGGATGGGATGGCTGAGCTGGTGTACCAGGGAATCAAGTAGATCACGCAGACTGGG

Function

symbol description
tomt Predicted to enable catechol O-methyltransferase activity. Involved in auditory behavior. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception; neuromast development; and neuron differentiation. Located in Golgi apparatus; basolateral plasma membrane; and endoplasmic reticulum. Is expressed in anterior macula; inner ear; neuromast hair cell; and posterior macula. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 63. Orthologous to human LRTOMT (leucine rich transmembrane and O-methyltransferase domain containing).

NR:

description
LOW QUALITY PROTEIN: transmembrane O-methyltransferase-like

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0016206 catechol O-methyltransferase activity molecular_function

KEGG:

id description
K00545 COMT; catechol O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787839.1 True 868 mRNA 0.54 5 26861807 26864008

Neighbor

gene id symbol gene type direction distance location
folr LOC102204051,LOC104968280,LOC102291363 coding downstream 5571 26852477 ~ 26856236 (-)
inppl1a inppl1 coding downstream 13856 26819084 ~ 26847951 (-)
stard10 stard10 coding downstream 99078 26748258 ~ 26762729 (-)
LOC120575574 arap1 coding downstream 117013 26683563 ~ 26744794 (-)
LOC120574272 pde2a coding downstream 198409 26471640 ~ 26663398 (-)
sfrp2l LOC104968278,LOC103371952,LOC103378548 coding upstream 528 26864536 ~ 26869559 (-)
lrrc51 lrrc51,LOC100706293,LOC102797274,LOC102204925,LOC102290838,LOC104968276 coding upstream 9242 26873250 ~ 26877133 (-)
naalad2 folh1b coding upstream 55627 26919635 ~ 26938436 (-)
tyr tyr coding upstream 102336 26966344 ~ 26972566 (-)
fzd4 fzd4 coding upstream 296435 27160443 ~ 27170378 (-)
G19788 NA non-coding downstream 500 26859783 ~ 26861307 (-)
G19700 NA non-coding downstream 302138 26487858 ~ 26559669 (-)
G19665 NA non-coding downstream 449233 26311617 ~ 26412574 (-)
G19685 NA non-coding downstream 453059 26407288 ~ 26408748 (-)
G19660 NA non-coding downstream 551136 26307737 ~ 26310671 (-)
G19811 NA non-coding upstream 41165 26905173 ~ 26908000 (-)
G19832 NA non-coding upstream 149640 27013648 ~ 27021216 (-)
G19851 NA non-coding upstream 257763 27121771 ~ 27122407 (-)
G19874 NA non-coding upstream 353734 27217742 ~ 27218190 (-)
G19876 NA non-coding upstream 363243 27227251 ~ 27227489 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 391911 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 415872 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 527088 26307064 ~ 26334719 (-)
trip12 trip12 other downstream 772105 26041295 ~ 26089702 (-)
G19270 ptx3 other downstream 2608894 24248031 ~ 24252913 (-)
G19840 NA other upstream 224598 27088606 ~ 27089064 (-)
cwf19l2 cwf19l2 other upstream 960597 27824605 ~ 27847548 (-)
G20417 scarf1 other upstream 2583162 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 3103421 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 3223727 30087735 ~ 30091711 (-)

Expression


Co-expression Network