sfrp2l (LOC104968278,LOC103371952,LOC103378548)


Basic Information

Item Value
gene id sfrp2l
gene name LOC104968278,LOC103371952,LOC103378548
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 26864536 ~ 26869559 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787892.1
AGGACGAGCTATCACATGACAGTAGCACTGGTGCAACAACACAACGACCATTTCCGGTATATGAGAAGCAGCTGTGGCCTCCGCAACGTGACGAGGGAATTTTCAAACGCTAGGCCTACATGCCGGTCAAGTCCAGGCAGAAGAGCAGCAGCTTTGCAGACTTCACTTTGTTCTTGCTGAAACAATAacaatgtgtgtttctgtgctcaGCTTTATTTTGCTGTTTGGAGTTTCTCATGCTTTTGACACCGAGGCTCCTGCCCAGCTCGGGCCTCTGTCGCTCGGGTTCAGTTCCTCGGTCCGCTCGGTGTGTAAACCCATCCCGAGCACGCTGTCTCTGTGCCACGGGATCGGCTACAGGCACATGCGGATCCCCAACTTGCTCGGCCATGATACACTAAGAGAGGCGCAACAGCAGTCGGCGGCCTGGCTGCCCCTCATCTCCAAGCTGTGCCACCGGGACACCAAGAAGTTCTTGTGCTCGCTGTTTGCTCCGGTGTGTTTGCCGGAGCTCAGCGGGCCGATCAGCCCCTGCAGGAGCCTGTGCGAGGTCGTGCGGGACGGCTGCGTGCCCGTTATGAGCGCGTTCGGGTTCCCCTGGCCGGAGATGTTCAACTGCACCAGGTTCCCGCGCGGGACCGAGCTCTGTATCCCGGCAACCTTAGAGCAGGAGGGGCGAACGGCAGAGGAGGTCAGGCACGAGGAAGTGTTGAAAGGGAGTGTTATCTGTGATGCCTGTAGCCTGGCTGCTGAAGGCGAAACTGACATCCAGGAAAACTTCTGTCATAATCCATATGctTTTAAGATGCGTCTGGGCAGTGTGTCGATGGTGGGAGGGGACCGTCAGTTGGTGCCTACGGCCCGCAGCCGCATCCTGCGGTGGGCAGGGGGAGGTGCAGAGAGGGCAGAAGGGGTTGGAGGCGCAATGGCCCACAGTGCTTTGTGGCTGCAAGAAGGAGGCATGTGTACTTGTCCTGGCTTAGACTCTGCAGAGACAAATGAAGACAGGGGGTTAGAGGAGGAGCACATGGATAAGAGACAAGCAAAagaaggaggaaaggagggaaaATGGGCCCAGAGTGGATGGTACCTGGCCCTGGCTCAGGCCGAAGAGGGACGACTGGTGCTGACTCGACTGGTGAGGTGGACCAGAGGGGACAAAGAGCTGAAGAAGTTCATCAGAATGCTCCTTAAACCGTCCTGTCCAGAGCTGTAGACAGAGAGTTATTAACCATTGCAGTCCTGCCCAATGGACGCTGTAACTGTGTGCTGCTAATTGCAACATCATTAAATACTAAACAGCTAACAAATAGTTCCCAAATAACACTGAATAAATCACTTGAGTACCAATTGTTAGATACAACGTCAATTAACCTTAGTTCATAGATATCTGTGAATCTGGAAACTGGCAACTGGTTCCTGATTAACTCTGAAAAAAAGGTGCTAAATCCCATACACTCAATAACCAATAAAAAACTATGTACGTACTTTATTTTGTATCCCATCAAGTAAAGCAGTGCGTCATATTTACTTTTTACCAAATGCATCGTTATATCACTATTACTTTACCATTATTTACCATTCAGGTAAAATAGAGCATCATTTTACTAATCTGACAAAGTGAATGATTATTAGACAGAGAGCTGGTGTTTGTGTATCTTATTGTAATTAACAATTACCCCATTATTCTGGAAATCTCACACAGTCAGTGATGGTAAGGCATTGCTACAAAAGTTACTATTACACATGGCATGCAGTGGTTGATATAATTCCAATTTGGGCAgtattttctttgtatttttctgTACATTTGTGTATATATGAGAGCAAAATATAACCCTTTAATCAAAGTCAAAGTGTTTGGTAATGATTGCAGGGTTTCGGCTGATCTCATCacacattttctattgataaaTATTTGGGTTGAAGCAATTGTTATACCTGTAAtgataaagaaatgttttgttaTACTACCTATCCTATCACAATGTCGTTTTATACACATTAAGCATACACCATAAAAATAATAGACCTGCAAGTTTTTTATTGCCTCATATTTTACTATTTTGTTTCACAGCAGCTTAAGTCTCAGTAGTTTTATCAGTGAAATGTTAGGAAGTCACATCAAAAGAGAAacattgaaaagaaagaaagggaattatgtgatgtgaacaataaatcatttacatttca

Function

NR:

description
secreted frizzled-related protein 2-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787892.1 True 2193 mRNA 0.46 4 26864536 26869559

Neighbor

gene id symbol gene type direction distance location
tomt tomt,LOC104968284,LOC102290535,LOC100705770,LOC103372127,LOC106927839 coding downstream 528 26861807 ~ 26864008 (-)
folr LOC102204051,LOC104968280,LOC102291363 coding downstream 8300 26852477 ~ 26856236 (-)
inppl1a inppl1 coding downstream 16585 26819084 ~ 26847951 (-)
stard10 stard10 coding downstream 101807 26748258 ~ 26762729 (-)
LOC120575574 arap1 coding downstream 119742 26683563 ~ 26744794 (-)
lrrc51 lrrc51,LOC100706293,LOC102797274,LOC102204925,LOC102290838,LOC104968276 coding upstream 3691 26873250 ~ 26877133 (-)
naalad2 folh1b coding upstream 50076 26919635 ~ 26938436 (-)
tyr tyr coding upstream 96785 26966344 ~ 26972566 (-)
fzd4 fzd4 coding upstream 290884 27160443 ~ 27170378 (-)
LOC120553392 NA coding upstream 377674 27247233 ~ 27256996 (-)
G19788 NA non-coding downstream 3229 26859783 ~ 26861307 (-)
G19700 NA non-coding downstream 304867 26487858 ~ 26559669 (-)
G19665 NA non-coding downstream 451962 26311617 ~ 26412574 (-)
G19685 NA non-coding downstream 455788 26407288 ~ 26408748 (-)
G19660 NA non-coding downstream 553865 26307737 ~ 26310671 (-)
G19811 NA non-coding upstream 35614 26905173 ~ 26908000 (-)
G19832 NA non-coding upstream 144089 27013648 ~ 27021216 (-)
G19851 NA non-coding upstream 252212 27121771 ~ 27122407 (-)
G19874 NA non-coding upstream 348183 27217742 ~ 27218190 (-)
G19876 NA non-coding upstream 357692 27227251 ~ 27227489 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 394640 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 418601 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 529817 26307064 ~ 26334719 (-)
trip12 trip12 other downstream 774834 26041295 ~ 26089702 (-)
G19270 ptx3 other downstream 2611623 24248031 ~ 24252913 (-)
G19840 NA other upstream 219047 27088606 ~ 27089064 (-)
cwf19l2 cwf19l2 other upstream 955046 27824605 ~ 27847548 (-)
G20417 scarf1 other upstream 2577611 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 3097870 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 3218176 30087735 ~ 30091711 (-)

Expression


Co-expression Network