p4ha3 (p4ha3)


Basic Information

Item Value
gene id p4ha3
gene name p4ha3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 37732841 ~ 37746282 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788026.1
GGAATATAACCTCTCATTGTCTCAATAAGCATGCAGCGCTGATCATACAGGGTTTATGATTGACTGTGGGACTGGGTTGCAGCAGGCTGCAGGTCAGTCCCACACAGAAGGAAAAAGCTGATGTCAGAGCAGATGAGGGTGACCCCCGTGAGGAATTTAGAGGCACTCTTGTAAATCCTGAGGATCGTCAGTACAGTTCAGGACAGTGCGAGAGGAGCCCACTCACTGAAGCTACTCCACAAGAGAAGCAATACGTTTATTATCAGCGCAGGAGATGAAGTATCCCACATGGGTTTGCTTCAGCTGGAGTCTCCTGACTGTAGCTGTGATTCCCGTGTCTTTGGGGGAAATGTACACGTCGCTGCTGAACGTCAAGCAGGCGATCAGTGTTGAACGGAAGCTGATCGATTACTTGAGAATTTATATCGACCACGAGTTTGAGAGACTGGAGGACATCAAGCGCTTTTATGCCAAAGTGTCAGACCTGCACACTGAACTTTACAAAGGCCCGGCGACAGCGATGGCCAACCCGCTGGTGGCATTCACCCTGATCAAGCGGCTGCATTCCGAGTGGCTGAACGTAGTCTACAGCAACGAAGCCCTGGAGAACACACAAGCCCTCAGGTCCAGttatgaggaggaagaggccgATCTGCCCAAACTGGAAGACCTCCAGGGGGCCGCCAAGGGGCTGATGAGGCTCCAGGATGTGTATGCTCTCCAAGTTGCGAGCCTTGTGAGGGGTTGTTTCCAGAGAGTCACTAAAGGCAAGCCTATTGATATCTACCTGCCTGCAGTGTCTGTCCCGCTGTCTGGTGATGACTGCTTTCTGGTTGGAAAGGTGGCCTACGAGCAGGAGGACTACTACCACTCTGTGCAGTGGTTGGAGGAGTCGGTGCGTCTCTTCAGGGGAACAGGAGGCGAGTGGAGCCCTGAGAATGAAGGGACTTTAGAGGATGCTCTGGATCACCTGGCATTTTCTCACTTCAAAACAGGAAACATTTCCTATGCTCTCAGTCTATCTCAGGAGTTACTGAACCATGATCCAATGAACGGAAGAGTTTTGCAGAATGTTGAGAAATACGAGAAGCTGCTGGGTACGAGTCCACCCATATCAATAAGAGGCGATGGGCTGAGGAGACCCACCTCCAATAATTTAAGGACCAGGGACACTTATGAGAGGCTCTGCCAGACCCAAGGCTCTCAGCAGCCATTGCTTTCTGAAAACCCCAGACTATTCTGTGACTACTTCACCAACGGGAATCCTGGACTGCTACTGCTGCCGGTGAGACGGGAAGTGCTGAGCCTGCGGCCGTATGTGGTCCTGTACCACAGCTTCATCACTGACACAGAGGCTGAGGACATCAAGAGGACCGCCCAGCCAGGATTGAAACGATCAGTGGTGGCAGCTGGAGAGAAACAAGCAACGGCAGACTACCGCATCAGCAAAAGTGCATGGCTGAAGGGATCAGCACACTCCACTGTTGGGAAGCTGGACCAGAGGATCTCCATGCTCACAGGTCTGAATGTGAAGCATCCATATGGCGAGTACCTCCAAGTAGTGAATTATGGGATTGGTGGCCATTATGAGCCTCACTTTGACCATGCTACATCGCCTTCAAGTCCCGTGTTCAAGCTGAAAACTGGGAATCGAGTGGCAACCTTTATGATATATCTCAGCTCTGTCGAGGCAGGTGGGTGCACAGCTTTCATCTACGCCAACTTCAGCGTTCCCGTCATGGAGAAAGCTGCCATTTTCTGGTGGAATCTCCATAGAAATGGTCAAGGAGACGCAGACACACTGCATGCTGGCTGCCCTGTGCTTATAGGGGACAAATGGGTGGCAAACAAATGGATCCATGAGCACGGCCAAGAGTTCCACCATCGCTGCAGCCTGAATCCTGAAGAGTGAGTGAGAGGGGTGGAGCGATAGCTGGGCCCCTTGCAGTACAAGAGCCAGCCTCTACAATTGAGAGGCACACTTGCGGGTGGAGAGAAGAAGGAAGCCAGAAAGTGAGCACACAGGCAGGGGAGGTTAGAGCTGTTATGGGGCAGCCTGCATCTGTGATTGGAGACCCAGGCCGCAGGGAGCCTGAAGCGTACAGTGCTGCAGTGGACATGGATAGCACAAGGCTGAGAGGTGGGGTAGAAGTGGACTGGGGCAGTTGGCAATCAGCCCCCAGAGGCCAAAATGCTCTCTTGCTCTTACTGGCCAGTTCCTGCAGATGAGTGGAGTGAGGCCTCTACCTTCACACACTGTGCTGGTTTCAGTAAACTGTGCAAGGCTGTTTGCCTCTCCTGCTTCCTTAAAAACTGATGCAGCCCTTTTCCTACACTGGGCCCACTCTAGGTTCTGTCTTTAAAAATCAAcacagctgtactttgtgcAGAGTCTAAGAACTTTATTTCCAATGTGTAGATGCATAAGTTTACAAACATACCTAATGTGCCTGAATCACAGTGCAATGTGTAGACATTTCTGTTTGATGTAATGTTGcagccaaaaaataaaatgctgtttttggATTCCATGAAATGCATGGAAGAGCAAGCAGATA
>XM_039788034.1
GGAATATAACCTCTCATTGTCTCAATAAGCATGCAGCGCTGATCATACAGGGTTTATGATTGACTGTGGGACTGGGTTGCAGCAGGCTGCAGGTCAGTCCCACACAGAAGGAAAAAGCTGATGTCAGAGCAGATGAGGGTGACCCCCGTGAGGAATTTAGAGGCACTCTTGTAAATCCTGAGGATCGTCAGTACAGTTCAGGACAGTGCGAGAGGAGCCCACTCACTGAAGCTACTCCACAAGAGAAGCAATACGTTTATTATCAGCGCAGGAGATGAAGTATCCCACATGGGTTTGCTTCAGCTGGAGTCTCCTGACTGTAGCTGTGATTCCCGTGTCTTTGGGGGAAATGTACACGTCGCTGCTGAACGTCAAGCAGGCGATCAGTGTTGAACGGAAGCTGATCGATTACTTGAGAATTTATATCGACCACGAGTTTGAGAGACTGGAGGACATCAAGCGCTTTTATGCCAAAGTGTCAGACCTGCACACTGAACTTTACAAAGGCCCGGCGACAGCGATGGCCAACCCGCTGGTGGCATTCACCCTGATCAAGCGGCTGCATTCCGAGTGGCTGAACGTAGTCTACAGCAACGAAGCCCTGGAGAACACACAAGCCCTCAGGTCCAGttatgaggaggaagaggccgATCTGCCCAAACTGGAAGACCTCCAGGGGGCCGCCAAGGGGCTGATGAGGCTCCAGGATGTGTATGCTCTCCAAGTTGCGAGCCTTGTGAGGGGTTGTTTCCAGAGAGTCACTAAAGGCAAGCCTATTGATATCTACCTGCCTGCAGTGTCTGTCCCGCTGTCTGGTGATGACTGCTTTCTGGTTGGAAAGGTGGCCTACGAGCAGGAGGACTACTACCACTCTGTGCAGTGGTTGGAGGAGTCGGTGCGTCTCTTCAGGGGAACAGGAGGCGAGTGGAGCCCTGAGAATGAAGGGACTTTAGAGGATGCTCTGGATCACCTGGCATTTTCTCACTTCAAAACAGGAAACATTTCCTATGCTCTCAGTCTATCTCAGGAGTTACTGAACCATGATCCAATGAACGGAAGAGTTTTGCAGAATGTTGAGAAATACGAGAAGCTGCTGGGTACGAGTCCACCCATATCAATAAGAGGCGATGGGCTGAGGAGACCCACCTCCAATAATTTAAGGACCAGGGACACTTATGAGAGGCTCTGCCAGACCCAAGGCTCTCAGCCATTGCTTTCTGAAAACCCCAGACTATTCTGTGACTACTTCACCAACGGGAATCCTGGACTGCTACTGCTGCCGGTGAGACGGGAAGTGCTGAGCCTGCGGCCGTATGTGGTCCTGTACCACAGCTTCATCACTGACACAGAGGCTGAGGACATCAAGAGGACCGCCCAGCCAGGATTGAAACGATCAGTGGTGGCAGCTGGAGAGAAACAAGCAACGGCAGACTACCGCATCAGCAAAAGTGCATGGCTGAAGGGATCAGCACACTCCACTGTTGGGAAGCTGGACCAGAGGATCTCCATGCTCACAGGTCTGAATGTGAAGCATCCATATGGCGAGTACCTCCAAGTAGTGAATTATGGGATTGGTGGCCATTATGAGCCTCACTTTGACCATGCTACATCGCCTTCAAGTCCCGTGTTCAAGCTGAAAACTGGGAATCGAGTGGCAACCTTTATGATATATCTCAGCTCTGTCGAGGCAGGTGGGTGCACAGCTTTCATCTACGCCAACTTCAGCGTTCCCGTCATGGAGAAAGCTGCCATTTTCTGGTGGAATCTCCATAGAAATGGTCAAGGAGACGCAGACACACTGCATGCTGGCTGCCCTGTGCTTATAGGGGACAAATGGGTGGCAAACAAATGGATCCATGAGCACGGCCAAGAGTTCCACCATCGCTGCAGCCTGAATCCTGAAGAGTGAGTGAGAGGGGTGGAGCGATAGCTGGGCCCCTTGCAGTACAAGAGCCAGCCTCTACAATTGAGAGGCACACTTGCGGGTGGAGAGAAGAAGGAAGCCAGAAAGTGAGCACACAGGCAGGGGAGGTTAGAGCTGTTATGGGGCAGCCTGCATCTGTGATTGGAGACCCAGGCCGCAGGGAGCCTGAAGCGTACAGTGCTGCAGTGGACATGGATAGCACAAGGCTGAGAGGTGGGGTAGAAGTGGACTGGGGCAGTTGGCAATCAGCCCCCAGAGGCCAAAATGCTCTCTTGCTCTTACTGGCCAGTTCCTGCAGATGAGTGGAGTGAGGCCTCTACCTTCACACACTGTGCTGGTTTCAGTAAACTGTGCAAGGCTGTTTGCCTCTCCTGCTTCCTTAAAAACTGATGCAGCCCTTTTCCTACACTGGGCCCACTCTAGGTTCTGTCTTTAAAAATCAAcacagctgtactttgtgcAGAGTCTAAGAACTTTATTTCCAATGTGTAGATGCATAAGTTTACAAACATACCTAATGTGCCTGAATCACAGTGCAATGTGTAGACATTTCTGTTTGATGTAATGTTGcagccaaaaaataaaatgctgtttttggATTCCATGAAATGCATGGAAGAGCAAGCAGATA
>XM_039788043.1
GCAGCTGCTTCTGGAATATAACCTCTCATTGTCTCAATAAGCATGCAGCGCTGATCATACAGGGTTTATGATTGACTGTGGGACTGGGTTGCAGCAGCTTTTATGCCAAAGTGTCAGACCTGCACACTGAACTTTACAAAGGCCCGGCGACAGCGATGGCCAACCCGCTGGTGGCATTCACCCTGATCAAGCGGCTGCATTCCGAGTGGCTGAACGTAGTCTACAGCAACGAAGCCCTGGAGAACACACAAGCCCTCAGGTCCAGttatgaggaggaagaggccgATCTGCCCAAACTGGAAGACCTCCAGGGGGCCGCCAAGGGGCTGATGAGGCTCCAGGATGTGTATGCTCTCCAAGTTGCGAGCCTTGTGAGGGGTTGTTTCCAGAGAGTCACTAAAGGCAAGCCTATTGATATCTACCTGCCTGCAGTGTCTGTCCCGCTGTCTGGTGATGACTGCTTTCTGGTTGGAAAGGTGGCCTACGAGCAGGAGGACTACTACCACTCTGTGCAGTGGTTGGAGGAGTCGGTGCGTCTCTTCAGGGGAACAGGAGGCGAGTGGAGCCCTGAGAATGAAGGGACTTTAGAGGATGCTCTGGATCACCTGGCATTTTCTCACTTCAAAACAGGAAACATTTCCTATGCTCTCAGTCTATCTCAGGAGTTACTGAACCATGATCCAATGAACGGAAGAGTTTTGCAGAATGTTGAGAAATACGAGAAGCTGCTGGGTACGAGTCCACCCATATCAATAAGAGGCGATGGGCTGAGGAGACCCACCTCCAATAATTTAAGGACCAGGGACACTTATGAGAGGCTCTGCCAGACCCAAGGCTCTCAGCAGCCATTGCTTTCTGAAAACCCCAGACTATTCTGTGACTACTTCACCAACGGGAATCCTGGACTGCTACTGCTGCCGGTGAGACGGGAAGTGCTGAGCCTGCGGCCGTATGTGGTCCTGTACCACAGCTTCATCACTGACACAGAGGCTGAGGACATCAAGAGGACCGCCCAGCCAGGATTGAAACGATCAGTGGTGGCAGCTGGAGAGAAACAAGCAACGGCAGACTACCGCATCAGCAAAAGTGCATGGCTGAAGGGATCAGCACACTCCACTGTTGGGAAGCTGGACCAGAGGATCTCCATGCTCACAGGTCTGAATGTGAAGCATCCATATGGCGAGTACCTCCAAGTAGTGAATTATGGGATTGGTGGCCATTATGAGCCTCACTTTGACCATGCTACATCGCCTTCAAGTCCCGTGTTCAAGCTGAAAACTGGGAATCGAGTGGCAACCTTTATGATATATCTCAGCTCTGTCGAGGCAGGTGGGTGCACAGCTTTCATCTACGCCAACTTCAGCGTTCCCGTCATGGAGAAAGCTGCCATTTTCTGGTGGAATCTCCATAGAAATGGTCAAGGAGACGCAGACACACTGCATGCTGGCTGCCCTGTGCTTATAGGGGACAAATGGGTGGCAAACAAATGGATCCATGAGCACGGCCAAGAGTTCCACCATCGCTGCAGCCTGAATCCTGAAGAGTGAGTGAGAGGGGTGGAGCGATAGCTGGGCCCCTTGCAGTACAAGAGCCAGCCTCTACAATTGAGAGGCACACTTGCGGGTGGAGAGAAGAAGGAAGCCAGAAAGTGAGCACACAGGCAGGGGAGGTTAGAGCTGTTATGGGGCAGCCTGCATCTGTGATTGGAGACCCAGGCCGCAGGGAGCCTGAAGCGTACAGTGCTGCAGTGGACATGGATAGCACAAGGCTGAGAGGTGGGGTAGAAGTGGACTGGGGCAGTTGGCAATCAGCCCCCAGAGGCCAAAATGCTCTCTTGCTCTTACTGGCCAGTTCCTGCAGATGAGTGGAGTGAGGCCTCTACCTTCACACACTGTGCTGGTTTCAGTAAACTGTGCAAGGCTGTTTGCCTCTCCTGCTTCCTTAAAAACTGATGCAGCCCTTTTCCTACACTGGGCCCACTCTAGGTTCTGTCTTTAAAAATCAAcacagctgtactttgtgcAGAGTCTAAGAACTTTATTTCCAATGTGTAGATGCATAAGTTTACAAACATACCTAATGTGCCTGAATCACAGTGCAATGTGTAGACATTTCTGTTTGATGTAATGTTGcagccaaaaaataaaatgctgtttttggATTCCATGAAATGCATGGAAGAGCAAGCAGATA
>XR_005637810.1
GGAATATAACCTCTCATTGTCTCAATAAGCATGCAGCGCTGATCATACAGGGTTTATGATTGACTGTGGGACTGGGTTGCAGCAGGCTGCAGGTCAGTCCCACACAGAAGGAAAAAGCTGATGTCAGAGCAGATGAGGGTGACCCCCGTGAGGAATTTAGAGGCACTCTTGTAAATCCTGAGGATCGTCAGTACAGTTCAGGACAGTGCGAGAGGAGCCCACTCACTGAAGCTACTCCACAAGAGAAGCAATACGTTTATTATCAGCGCAGGAGATGAAGTATCCCACATGGGTTTGCTTCAGCTGGAGTCTCCTGACTGTAGCTGTGATTCCCGTGTCTTTGGGGGAAATGTACACGTCGCTGCTGAACGTCAAGCAGGCGATCAGTGTTGAACGGAAGCTGATCGATTACTTGAGAATTTATATCGACCACGAGTTTGAGAGACTGGAGGACATCAAGCGCTTTTATGCCAAAGTGTCAGACCTGCACACTGAACTTTACAAAGGCCCGGCGACAGCGATGGCCAACCCGCTGGTGGCATTCACCCTGATCAAGCGGCTGCATTCCGAGTGGCTGAACGTAGTCTACAGCAACGAAGCCCTGGAGAACACACAAGCCCTCAGGTCCAGttatgaggaggaagaggccgATCTGCCCAAACTGGAAGACCTCCAGGGGGCCGCCAAGGGGCTGATGAGGCTCCAGGATGTGTATGCTCTCCAAGTTGCGAGCCTTGTGAGGGGTTGTTTCCAGAGAGTCACTAAAGGCAAGCCTATTGATATCTACCTGCCTGCAGTGTCTGTCCCGCTGTCTGGTGATGACTGCTTTCTGGTTGGAAAGGTGGCCTACGAGCAGGAGGACTACTACCACTCTGTGCAGTGGTTGGAGGAGTCGGTGCGTCTCTTCAGGGGAACAGGAGGCGAGTGGAGCCCTGAGAATGAAGGGACTTTAGAGGATGCTCTGGATCACCTGGCATTTTCTCACTTCAAAACAGGAAACATTTCCTATGCTCTCAGTCTATCTCAGGAGTTACTGAACCATGATCCAATGAACGGAAGAGTTTTGCAGAATGTTGAGAAATACGAGAAGCTGCTGGGTACGAGTCCACCCATATCAATAAGAGGCGATGGGCTGAGGAGACCCACCTCCAATAATTTAAGGACCAGGGACACTTATGAGAGGCTCTGCCAGACCCAAGGCTCTCAGCAGCCATTGCTTTCTGAAAACCCCAGACTATTCTGTGACTACTTCACCAACGGGAATCCTGGACTGCTACTGCTGCCGGTGAGACGGGAAGTGCTGAGCCTGCGGCCGTATGTGGTCCTGTACCACAGCTTCATCACTGACACAGAGGCTGAGGACATCAAGAGGACCGCCCAGCCAGGAGTAAGTGCATTTTCCTCATCACttgcagTTGAAACGATCAGTGGTGGCAGCTGGAGAGAAACAAGCAACGGCAGACTACCGCATCAGCAAAAGTGCATGGCTGAAGGGATCAGCACACTCCACTGTTGGGAAGCTGGACCAGAGGATCTCCATGCTCACAGGTCTGAATGTGAAGCATCCATATGGCGAGTACCTCCAAGTAGTGAATTATGGGATTGGTGGCCATTATGAGCCTCACTTTGACCATGCTACATCGCCTTCAAGTCCCGTGTTCAAGCTGAAAACTGGGAATCGAGTGGCAACCTTTATGATATATCTCAGCTCTGTCGAGGCAGGTGGGTGCACAGCTTTCATCTACGCCAACTTCAGCGTTCCCGTCATGGAG

Function

symbol description
p4ha3 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including alar plate midbrain region; muscle; optic tectum; retina; and yolk syncytial layer.

NR:

description
PREDICTED: prolyl 4-hydroxylase subunit alpha-3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788026.1 True 2558 mRNA 0.51 14 37732841 37746270
XM_039788034.1 False 2555 mRNA 0.51 14 37732841 37746270
XM_039788043.1 False 2193 mRNA 0.51 13 37732841 37746282
XR_005637810.1 False 1772 transcript 0.52 12 37734865 37746270

Neighbor

gene id symbol gene type direction distance location
c2cd3 NA coding downstream 2099 37709784 ~ 37730742 (-)
camkk1b LOC103356711,LOC100697126,LOC101483702 coding downstream 46440 37675466 ~ 37686401 (-)
LOC120552187 LOC104967580,LOC102298130,LOC100699189 coding downstream 93228 37630312 ~ 37639613 (-)
zgc:174895 NA coding downstream 133899 37584241 ~ 37598942 (-)
nek8 nek8 coding downstream 166218 37546734 ~ 37566623 (-)
or95a1 NA coding upstream 464 37746746 ~ 37747713 (-)
LOC120548891 NA coding upstream 25265 37771547 ~ 37772536 (-)
LOC120551756 NA coding upstream 29392 37775674 ~ 37776606 (-)
LOC120551759 NA coding upstream 38661 37784943 ~ 37785878 (-)
rrp8 NA coding upstream 123250 37869532 ~ 37876155 (-)
G22371 NA non-coding downstream 64897 37667639 ~ 37667944 (-)
G22321 NA non-coding downstream 166386 37566234 ~ 37566455 (-)
G22320 NA non-coding downstream 166666 37565863 ~ 37566175 (-)
G22308 NA non-coding downstream 305537 37423842 ~ 37427304 (-)
G22291 NA non-coding downstream 356536 37373188 ~ 37376305 (-)
G22458 NA non-coding upstream 155974 37902256 ~ 37903681 (-)
G22462 NA non-coding upstream 160080 37906362 ~ 37910118 (-)
LOC120575673 NA non-coding upstream 557524 38303806 ~ 38351320 (-)
G22520 NA non-coding upstream 606100 38352382 ~ 38352586 (-)
G22563 NA non-coding upstream 1067497 38813779 ~ 38814207 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 34702 37692438 ~ 37698139 (-)
si:ch211-105f12.2 LOC103368707,LOC107379995,LOC102080198,LOC107090084 other downstream 77046 37651459 ~ 37655795 (-)
tada2a tada2a other downstream 282001 37438986 ~ 37450840 (-)
G22245 dynll2a,LOC107554284 other downstream 463521 37264573 ~ 37269320 (-)
kiaa0753 kiaa0753 other downstream 597000 37112196 ~ 37135841 (-)
robo2 NA other upstream 606742 38353024 ~ 38648599 (-)
LOC120570635 sel1l3,LOC103353588 other upstream 981226 38727508 ~ 38735823 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other upstream 2197289 39943571 ~ 40033156 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 2543723 40290005 ~ 40470176 (-)
cntn5 NA other upstream 4283391 42029673 ~ 42167037 (-)

Expression


Co-expression Network