LOC120551046 (LOC106510929)


Basic Information

Item Value
gene id LOC120551046
gene name LOC106510929
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7712652 ~ 7715037 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788182.1
AGGCATTTTATCAGTCGTGAATTCCATCTACGACCCCCTTGGCTTTTTGGCTCCCGTCATCTTGCCTGCTAAACTCCTGCTGAAAGATCTTTGTAAAGAACAATACGGATGGGACGAGAACATTGGCGGAAAACACGCTGAAGATTGGAAAGGATGGATCGAAGATGTCAGTCATCTCTCTACCTTCCATATGAGCAGGTGTTTGAAGCCTACAGATTTTGGATGCACTGCAGCAGCACAGTTACATCATTTTTCAGACGCTTCAGAGTCCGCATACGGCACTGTCTCTTATCTGCTGCTAGAGAATAGTCAAGGTGAGAAGCGTTGTGCATTCCTCATGGGGAAGTCAAGAGTGGCACCACTCAAACTGGTCACCATCCCCAGACTTGAGTTGACTGCAGCAGTTGTCGCTGTCAAAATAGACAAGATGTTACATCAAGAGCTTCAAGTTCCTCTGCAACAATCTATTTTCTGGACAGACAGCACTACAGTGCTCCGATACATTGACAGTGAAACCGCTCGTTTCAAAACCTTCGTTGCAAACAGAATCTCGTTGATCCGAGAAGCAACCAAGCCATCGCAATGGAAGTACGTCAGAACAACGGAAAATCCTGCAGATCAAGCCAGCAGGGGCCTGAAAGCTAAGAGTTTGGTTCAAGGAGGAACATGGATCAATGGGCCGGACTTCTTGCTGAACAATGAATGTGACTGGTCGGAACAGCCTGTGCGAAGGAAAGAAAGCCTTCAAAATGATCCAGAAGTCAAGAAGGGAGCTACAGTCAACATGATAAAGGTTGAAGAAAACATGGAACCAATTGACAAACTGATCAACCATTACTCGGACTGGCATAAACTAAAAAGATCAGTGGCCTGGATTTTAAAGGTGAAGGAAAATCTGTGGAAactgaaagaggaaagaaagaaaatatcaagAGCGATCAGGCAAACTGAGAAGGACCCTGAAAAGGAAAGCTCAAAGTTAGAACAGCAAATGAAGAAAttcaaaacaacagaaaagaaaTCACTTACTTTGGACGACCTGGTTGCCGCAGAATCAGAAATAATCCAATGCAGTCAAAGACAACAGTTTGGAGAAGATATCAAACTACTGGAGAAAGGTAAACCGCTCAGTCGCAGCAGTCAGCTGTTCAAATTGGATCCAATTCTTCAAGATGGCATGTTAAGGGTCGGCGGAAGACTCAACAAGTCTGCCATGCCAGAAAATGCTAAACATCCAGCAATTCTTTCAAAGCAAAGCAGAGTTGCTACACTGATTTTGAGAGACATACACAAAAGAACAGGACACTGTGGACGCAGTTATGTATTGGCAGAACTGAGATGCAGGTATTGGATCCCACAAGCCAATTCTGCAATTCGAAAAATAATCAACAAATGTACAGTGTGCCGCAGGATTAATGGAAAGGTTGGTGAGCAAAAAATGGCAAACCTGCCTGAAGATAGGCTCTTGCCAGATAAGCCTCCCTTCACAAATACCGGCGTTGATTTCTTCGGGCCGTTTGATGTCAAGCGGGGCCGGGGTACAGTCAAAAAGTACGGCGTGATGTTCACTTGTCTCACTCTCCGAGCGGTGCACATTGAAGTTGCAGATAGCCTCGGCACAGACTCCTGCATTAATGCAATTCGTCGCTTTATGTGCAGGAGAGGTCAAGTCACCATCATGCGTTCTGACAACGGCACAAATTTTGTTTCCGCTGAAAGAGAGTTGAGAGAAGCCGTTCAACAGCTGGACAATGACAAGATTGAAAAAGCCTTGCAGCCAAAGGGAATAAAGTGGATATTCAACAGCCCGGCCGCTTCACACCAAGGCGGAGTTTGGGAACGACAAATTCGGACTGTGCGAAGAATTCTCAACTCCCTTTTGAAAGAGCAAGCAGTGACTGATGACTGTCTTCTGACAATAATGTGCGAGGTTGAAAGCATCATCAACGGCAGGCCGCTTACAACTGTTTCAGATGATGTGAACGACGTAGAACCTCTAACACCCAATCACTTATTGCTGTTGAAATCTCAACCCAACATGCCTCCAGGGATTTTCAGCAAAGATGACATGTACACAAGAAAGAGATGGAAGCAAGTCCAATATCTTGTGGATTTGTTTTGGACTAGATGGACGCGTGAATACCTTCCACTTCTTCAGGAGCGCCAGAAATGGCTGAAGCCAAGAAGAAACTTCATGACGGGAGATGTTGTGCTACTAGTGGACAGTTCTTCCCCACGGAACTCCTGGCTCATGGGAAAGATAGTGGAAACGTTGCCGGACTCCAATGGAACAGTGCGAAGAGTGAAGATAAAGACCAAGACCAGCACTCTGGAAAGGCCTGTAAACAAACTGTGCTTGTTGGAAGAGGCGACATCAGAAGAGTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106510929, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788182.1 True 2386 mRNA 0.45 1 7712652 7715037

Neighbor

gene id symbol gene type direction distance location
trnag-ucc NA coding downstream 202581 7510000 ~ 7510071 (-)
polr2d polr2d coding downstream 203507 7495033 ~ 7509145 (-)
LOC120543849 NA coding downstream 300145 7398193 ~ 7412507 (-)
LOC120544032 NA coding downstream 444938 7262974 ~ 7267714 (-)
wdr62 NA coding downstream 652956 7036122 ~ 7059696 (-)
LOC120551059 NA coding upstream 268057 7983094 ~ 7986427 (-)
LOC120543635 NA coding upstream 307591 8022628 ~ 8063341 (-)
LOC120543856 NA coding upstream 364187 8079224 ~ 8098464 (-)
LOC120543874 LOC101482597,LOC103360230,LOC107102854 coding upstream 654732 8369769 ~ 8392277 (-)
LOC120543728 NA coding upstream 907445 8622482 ~ 8638087 (-)
G15332 NA non-coding downstream 3975 7682726 ~ 7708677 (-)
G15325 eif4h,LOC102797691,LOC106535584 non-coding downstream 53690 7642621 ~ 7658962 (-)
G15316 NA non-coding downstream 75629 7569982 ~ 7637023 (-)
G15301 NA non-coding downstream 140473 7505947 ~ 7572179 (-)
G15300 NA non-coding downstream 213846 7498025 ~ 7498806 (-)
G15339 NA non-coding upstream 59404 7774441 ~ 7897904 (-)
G15346 NA non-coding upstream 102405 7817442 ~ 7873063 (-)
G15350 NA non-coding upstream 133957 7848994 ~ 7857158 (-)
G15353 NA non-coding upstream 157015 7872052 ~ 7900120 (-)
G15356 NA non-coding upstream 171523 7886560 ~ 7886932 (-)
lrch3 lrch3 other downstream 368759 7309914 ~ 7343893 (-)
LOC120544114 NA other downstream 501286 7207735 ~ 7211366 (-)
LOC120543599 LOC102193948,LOC103360213,LOC102310147,LOC107834023,LOC106944350,LOC103473932 other downstream 513113 7142729 ~ 7199539 (-)
rpl35a rpl35a other downstream 576490 7129626 ~ 7136162 (-)
LOC120543742 abcc5 other downstream 586254 7114719 ~ 7126398 (-)
trnaa-cgc NA other upstream 221219 7936256 ~ 7936327 (-)
LOC120551075 LOC103475274,LOC105922519 other upstream 422264 8137301 ~ 8155303 (-)
G15757 NA other upstream 753320 8468357 ~ 8469760 (-)
G15771 NA other upstream 886880 8601917 ~ 8656963 (-)
LOC120544569 dgkd,LOC102780004 other upstream 977037 8692074 ~ 8742123 (-)

Expression


Co-expression Network