gdpd4a (LOC102208771,LOC101483676,LOC102301321,LOC100692992,LOC103373497)


Basic Information

Item Value
gene id gdpd4a
gene name LOC102208771,LOC101483676,LOC102301321,LOC100692992,LOC103373497
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11620671 ~ 11642942 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788505.1
tgCCGGGCTGTGGTTGAGTGTAAGCTCGTGACCAGACTGAAGCTGGGGAAGCTAAAGGTGGTGCGGCGGCAGCTGCTGCAACGGTATGAACACCAGCCGTTTGTCTCCTGCCTGGCCGGCCTCTACGGTTGCCAATGGAGACGATACCAAAGAGCCCGGGCCCAGCCAGGAGAGTGCTGCTGCAGCAaggtgGAGTGTGGCAGTTTTGGCCTCCTGATTGTCACCTTCTTCCTGAGTTTTTTATTCCTCTATTTCTGGAGTGAAGCTCAGAACGACTACATCGACTTTGACTGGTTTAACTTTGGGACTCTGGGTTTCTGGTTTCCCTGGTCTCGGGTCCTGCtggttgttgctgctgctctcTTCACATACATCGCCTTACTATTGGTGCTGGCAGTGTGTCTGCTTTCTGAGGGTCAGAGGCTGTACCTTCACTGGAGCCACAAGACTGGCATCGTGGTGGCATTGGCGTTCTCCGTCACAGCCACCGCCATCTTGTCTGACATTTGGAGCAAAGAATGGAAGACTCTCCTTCTTTCCCTGCAGGTGACAGCACCTTTCCTCCACGTGGCTGCAGTCTTACTAATGGTGATTCTGTCCTGGCCAATAGCGTTGCATTTCTTTCGCATGAACAAGAAAGACcgctcaggtcgtctgggagagctctgctttctgtccccagagtcaggaCTAAACACGGAGAAGCAGCGCTCCGTTTTCATGCACcgcatatctggaacaaactcccagaaaactgcagTGCGTCAGGTGGCTGTCCTAGGTCTCTACCTGTCCGTGCTGTTCTCTCTCTACCTGGTCCCTCTGGGAATGTACTCACCATGCATTAAAGAGGCGGGAACGCTGGGACCCGCCCCGACACTCATCGGACACAGAGGAGCTCCGATGcttGCTCCAGAGAATACCGTGATGTCGTTTGAGAAGGCAGTGGAAGCTGGAGGAGAAGGACTGGAGACTGACGTTACCATCAGTTATGATGGTGTTCCCTTCCTGATGCACGACTCCACTCTGAAGAGAACCACCAATGTCGCTGATGTTTTCCCAAATCGAACGCACCTCGATGCCTCAATGTTCAGCTGGGCCGAGCTACAGCAGCTGAATGCTGGCGGCTGGTTCTTATTGAGGGATCCATTTGGGACTGTGTCGTCCTTGTCTGAGGCCGACTGCTCCCAGGCCCAGAACCAGTCTGTTCCCTCGCTGGCCCAGTTTCTGGAGGTAGCGGCCTCTAGCGGCAGACTAGTGCTGTTTGACCTGCACAAGCCACCGTACGGACATCCCTACAGTCAGTCGTACATCAACACCACTCTGCAGGTGGTGCACGCCCACATCAACTCCTCACAGgtgcTGTGGCTTCCATCTGAGGACAGGGATCTGGTCCACGCGGTGGACCCAGAGCTGCAGCAGACCTCTGGAGAAAAGGCATCTATCCAGGAACTGACAGACGGCCACATCACCAGGCTGAACCTGCACTACAGCACCATGTCACAACAACAGTTCagtaaGTACCAGTCAGTGAACATCAGCACTAACCTGTATGTGATCAGCCAGCAGTGGCTCTACACTCTGGCCTGGTGTGCCGGAGCTCAGTCCGTAACCACCAACTCCATCCACATCCTGTCCAACATCAACAAGCCGCTCTTCCTCATGacTCCAGAGGAATATAGTTTGATGTGGATTCTGACTGATGCTGTGTCGGCCTTCCTCATCATTGCTGTTTTCATATTCCATTGgtggagagagagaggcctgCCCTTCTGGTCAGGCAGCCGTCAGACCCATGAGAACGGACCGTACAGCAAGTTCAGGACAGAGCTGAGTGACGTGTGGTCCATTTCCAGCGTCATCGTCCGGCCCGACCTACGGAGCGCGCCCAGTTCCCCCAGTACCCCTCACCTGCCCACCATCACAGAGGAGTGACTGggggagacacacagagagagagagagatagagagagagagagagagagaggggtacaGAAAatgagagatagaaagagagagagaaagagggttTTGAATTGAAACTTGATTTCAAATCAAGTGTTTGTAGATAACATAatgcaaggcaattttatttacatagcAGCATTCAGACATGAAGTAATTCATAGTGCATCCTCTGGcatacaggaagccagtgcagtgATTGAGtgcattaaatattcatgactaaATTAGCAACAATGAAATTGGATTAAAAACGTTCTtggttattatttattaagagTTTAACACTGACAAACTAGATGTGGTTTGATCCGATTTGACATTTGGCAACATACTGCAAGCAAACAACTGTCATCGCATTGGCATTCAAATGTAGTTTAATTTGTGATGTAATCACCTTTTTCCAACTAAGCCCTGCCCGGTGCCTGAAGCTCAGAGAAACCCCAAAATGCAGAAATCTGTtgcaaaaacaaccaaaactgTTCTGTCTTTGGCAAAAAAATTTCATGTAAGAACTCATCACTCATAAT

Function

NR:

description
PREDICTED: glycerophosphodiester phosphodiesterase domain-containing protein 5-like isoform X1

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788505.1 True 2496 mRNA 0.51 17 11620671 11642942

Neighbor

gene id symbol gene type direction distance location
LOC120547527 LOC103361823,LOC107379843,LOC108244675 coding downstream 119331 11496172 ~ 11501340 (-)
si:cabz01090165.1 LOC100707198,LOC102192222 coding downstream 1053280 10493115 ~ 10567391 (-)
LOC120574326 NA coding downstream 1267832 10342382 ~ 10352839 (-)
LOC120551206 NA coding downstream 1278013 10257611 ~ 10342658 (-)
LOC120551203 NA coding downstream 1372600 10227228 ~ 10248071 (-)
pak1 pak1,LOC100698864,LOC101483196 coding upstream 56957 11699899 ~ 11793201 (-)
capn5a capn5,LOC100709916,LOC102310670,LOC106535735 coding upstream 170337 11813279 ~ 11865934 (-)
dcun1d5 LOC106964839,LOC103138233,LOC106911103,LOC103475081,LOC108248937,LOC103377933 coding upstream 244547 11887489 ~ 11906289 (-)
LOC120550316 NA coding upstream 343473 11986415 ~ 12006431 (-)
ints4 ints4 coding upstream 435264 12078206 ~ 12099187 (-)
G16366 NA non-coding downstream 8656 11611538 ~ 11612015 (-)
G16356 NA non-coding downstream 26213 11593821 ~ 11594458 (-)
G16355 NA non-coding downstream 27014 11592116 ~ 11593657 (-)
LOC120550111 NA non-coding downstream 30455 11586874 ~ 11590216 (-)
G16349 NA non-coding downstream 49448 11569955 ~ 11571223 (-)
G16377 NA non-coding upstream 51324 11694266 ~ 11695980 (-)
G16380 NA non-coding upstream 67906 11710848 ~ 11720242 (-)
G16383 NA non-coding upstream 166981 11809923 ~ 11812376 (-)
G16402 NA non-coding upstream 201994 11844936 ~ 11853130 (-)
LOC120550567 NA non-coding upstream 397082 12040024 ~ 12067403 (-)
G16143 LOC103372137,LOC102304476 other downstream 1195901 10373568 ~ 10424770 (-)
LOC120574316 NA other downstream 1289824 10318834 ~ 10330847 (-)
LOC120574297 NA other downstream 1419087 10184003 ~ 10201584 (-)
G16064 NA other downstream 1471100 10140176 ~ 10149571 (-)
G16066 NA other downstream 1482324 10136688 ~ 10138347 (-)
G16407 cul5,LOC101165410,LOC108248946 other upstream 306395 11949337 ~ 11955578 (-)
G16422 NA other upstream 346076 11989018 ~ 12033762 (-)
G16458 NA other upstream 582117 12225059 ~ 12262775 (-)
LOC120554324 NA other upstream 844075 12487017 ~ 12487180 (-)
LOC120554526 NA other upstream 845931 12488873 ~ 12489063 (-)

Expression


Co-expression Network