LOC120551456 (LOC102079500,LOC107380520,LOC101465397)


Basic Information

Item Value
gene id LOC120551456
gene name LOC102079500,LOC107380520,LOC101465397
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 24327466 ~ 24331196 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788908.1
ATGAAGCTTCCTTCAAGTCGGTTCCGGTTTGTGTCGTGGCATCGCCTGGAGCAGTGTGATGTTACGGGTGACCAGCTGACCTGCCCCAGGGTCAGAGAAGGGCCATCAGAAGAGCTGTTTCAAAGAGATAGGGATGACATCTGtttggagagagggaggagaagaaggaggagagaggaggaaggacaAAGATGGGAGGATAGACTGCAAGAGAATTGGGAAAATTGTCTGGAGTTAAATTTGTCCTACCAAGACTTGGGGGACCCCTTCCAGCAAGAGAATTTCCTTCGGATCCTCCGCCGGTTATTCCGTGTGGAGAAACTACAACTGGTTGACAATTCCCTCAGCAACCTGAGTTCTGTACGTCTGCCAAGGTGCAAAATGCTAAACCTGCACCGTAACCACCTGGTGTGTCTACGTCAGCTGCCAAAGCTCCCAGCTGTGGAGCACCTTTGTCTGTCTGAGAACGCCATTGGCTCCCTGGGGGGACTGGGAGCTCTAGGGAACAGCCCTCTTCGCTCCCTCAACCTAACCCGCAACCCAGTGACCTTCACTCAGGACTACCGAGCACGTGTTTTCCTCTGTTTGCCAAAGCTGGAGATCCTGGATGGAATCCCCAAGCTGCCAGAAGACTCTCTGCCCACCAGACTACAGTTCTCCCAAACTACCAGGATGTGTAACATCTTATGACAATTCTCTCAATGTATGGATGTGTATGGAATTAGTTCTCCCAATCCTACAACACTTGACACAGTGACAAGGATTCAGCAAAGCACTCTTCAGCAAACGTTGAAGTTGCACTAATGGTTTCATAGAGCTGTTAAATTTATTTACACAAATCGTGTCCCGACAGGTGCCGAAAAATGCTGACAATGACTGCCGTCAcagtaaatgtaatgtaatgtgctccAAGGCCatgtaaaatacttttttat

Function

NR:

description
PREDICTED: uncharacterized protein LOC102079500

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788908.1 True 935 mRNA 0.49 6 24327466 24331196

Neighbor

gene id symbol gene type direction distance location
veph1 veph1,LOC106613251 coding downstream 45631 24191471 ~ 24281835 (-)
ssr3 ssr3,LOC106581450 coding downstream 362999 23960754 ~ 23964467 (-)
tubd1 tubd1,LOC102795212 coding downstream 534490 23788779 ~ 23792976 (-)
dscamb dscam,LOC103377590 coding downstream 634089 23574700 ~ 23693377 (-)
LOC120553253 NA coding downstream 875048 23449151 ~ 23452418 (-)
serpini1 serpini1 coding upstream 4861 24336057 ~ 24355496 (-)
si si,LOC107380514 coding upstream 493827 24825023 ~ 24921452 (-)
slitrk3a slitrk3,LOC102777956 coding upstream 619179 24950375 ~ 24958185 (-)
LOC120573181 LOC104958666 coding upstream 711568 25042764 ~ 25050773 (-)
megf6 LOC100699370,LOC101470445,LOC102198030,LOC103366731,LOC102307182 coding upstream 1308783 25639979 ~ 25699538 (-)
LOC120547017 NA non-coding downstream 429 24314587 ~ 24327037 (-)
G19272 NA non-coding downstream 107345 24203069 ~ 24220121 (-)
G19264 ccnl1 non-coding downstream 148590 24170761 ~ 24178876 (-)
G19224 NA non-coding downstream 162168 24165078 ~ 24165298 (-)
G19191 NA non-coding downstream 296213 24028627 ~ 24031253 (-)
G19293 NA non-coding upstream 66613 24397809 ~ 24398780 (-)
G19319 NA non-coding upstream 284350 24615546 ~ 24615779 (-)
G19320 NA non-coding upstream 319371 24650567 ~ 24651550 (-)
G19331 NA non-coding upstream 387130 24718326 ~ 24718561 (-)
G19332 NA non-coding upstream 387421 24718617 ~ 24719077 (-)
G19270 ptx3 other downstream 74553 24248031 ~ 24252913 (-)
G19140 gmps,LOC102797084 other downstream 499512 23823821 ~ 23827954 (-)
slc33a1 slc33a1 other downstream 518014 23802515 ~ 23809452 (-)
atm atm,LOC102794456 other downstream 568640 23729488 ~ 23758826 (-)
LOC120574680 NA other downstream 866422 23453547 ~ 23461044 (-)
trip12 trip12 other upstream 1710099 26041295 ~ 26089702 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other upstream 1975868 26307064 ~ 26334719 (-)
LOC120570434 fam124b other upstream 2103085 26434281 ~ 26445935 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other upstream 2120184 26451380 ~ 26469896 (-)
G19840 NA other upstream 2757410 27088606 ~ 27089064 (-)

Expression


Co-expression Network