LOC120551709 (LOC104964223)


Basic Information

Item Value
gene id LOC120551709
gene name LOC104964223
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 34871873 ~ 34888054 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789236.1
ATGTCTCAGTTCCCCTGGCTCCTCGCTCGGTGGCCCTCCTCAGCTTTCTCCCTGCTGCTTCTCAGTGTAGTGGGCAGACAGATGGGACTGGAGGTGGTTCAGGCGATAGTGTGCTCCCGATTAGATCCAGAGGTATTACAAAATGTGTATGCCATGGCATTTGCGGTGGAGGAAATCAATCGTAACAACACCCTGCTACCAGGAGTGAAGCTGGGCTACCGCATATTTGATAGCTGTGTCCGATACCCCTGGGCTCTGCAAGCTGCATTGTCGCTGATTGCAGGAGACGAACACAGCTGCGGTCAACCTGTTCCTTTGCTCATTGGTGATGCCGCATCAACAACGACCATATTTCTGTCCAGGATCCTAGGGCCTCTCTCTGTGCCATTTATCAGCTACTTGTCAAGCTGCCCCTGTCTAAGTGACAAGATTAAGTTTCCTAACATCTTCAGAACAATCCCCAGTGATATTTTCCAAGCCCAGGCCATGGCACAGCTGGCCATACGCTTCTGCTGGACTTGGATGGGAGCGGTGGTTGTCAACAATGATTATGGTCTTTTGGCAATACAGGCATTTCAGGAAGGGACTCATGGGAAAGGGGTGTGTTTGGAATTCATAGAGACACTCCGCAAAGAAACTATTGAGAGTGATGCCAGACGTGTAGCCCTCACAATTCAAGCTTCGACTGCGAGGGTGATTCTGATCTTTTGCTGGTATACAGAAGTAAAGAAAGTATTCCTGGAACTGGCCAAGATAAATGTGACGGACAGACAGTTTCTGGCAAGTGAGGCTTggagcaccaataatgatcttCTCCGAAATCTTGCCATCTCTAAAGTGGCAAGTGGTGTTCTCGGTGTGGCCATTCGAAGTTCAACCATACCCGGATTTGAAAATTATCTCAGACGTTTGCACCCAATTCGTAATCCTGAAGATGACTTCTTACATGAattctgggaaaatgagtttggaTGCAGTCCTGGAGCGTCCTTTCAGAAAGCTTCTCTATCACCCTGCAGTGGCACAGAGTCCCTGGAGGGACTGCATAATCCCATCACTGATACCTCTCAGTTAAGGGTGACATATAATGTCTACCTTGCTGTTTATGCTGCAGCCCACGCCCTTCACAGCCTTCTCTCCTGCCCCGACACAGACAGCTCACACGGAAACAACAGACCCACCTGCTCTTCtccaaaaaacataaaatccatAGAGCTGTTGCAGCACTTGAACAACCTGCATTTCACAACGCCAAAGGGGGAAATGTTTTACTTTCAAGGTGGTGACGCTCCAGCAAAGTATGACCTTGTCAACTGGCAGAACACCCCTGAGGGGTCACTCAAACTTGTTTTGATTGGGCGTGTGGACGGGTTTGACCTCCACCTCAACCAGTCAGCTATTCAGTGGAGCACCGGATCCAATCAGGTGCCTACTTCAGTGTGCAGTGAGAGCTGCCCCCCAGGCACCCGAGTCGCCAACAGGAAAGGAGAACCTCTCTGCTGCTTTGACTGTATCCCATGTGCTGATGGGGAGATTAGCAATCAACATGGTTCCCTTCACTGTGAGCGTTGTCCATTAGAGTTTTGGTCCAATGCTAAACGAACTGCCTGCATCCCTCGCCAGCTGGACTTCCTTTCCTTTAATGAAACTTTGGGCATTACTCTGTCTACAGCAGCTGTGTCTGGTACTGTGGTGACAACAGCTGTATTTTTGGTTTTTCTTTACTACCGTCAAACACCTATGGTACGAGCCAACAATTCAGAACTGAGCTTCCTGCTTCTCCTGTCCCTGAAGCTCTGCTTCCTGTGCTCACTGGTGTTCATTGGTCGTCCATCAGTCTGGGCTTGTCGGTTCCAGCAGGCAGCTTTTGGGATCAGCTTTGTACTTTGTGTTTCCTGTCTCCTGGTCAAAACCATAGTAGTTCTGGCAGCTTTCCGCTCAGCTCGGCCTGGTGCTGAAGCCTTGATGAAGTGGTTTGGTCCAGGCCAACAGAGAGGAAGTGTTTGCCTCTTTACATCTATACAGGTTATCATTTGTGCCACATGGCTGTCCCTCAGCCCCCCTGTGCCTCAACGTGATCTGGGTTTtcaggggtcaaaggtcaccctGGAGTGCGCTATGGCCTCTGTGGTGGGCTTCTCTCTGGTTCTAGGTTACATTGGTTTGTTGGCCTGCACCTGCCTTCTCTTGGCCTTTCTTGCTCGGAAACTCCCTGACAACTTCAATGAGGCCAAACTGATCACCTTCAGCATGCTGATATTCTGTGCTGTCTGGGTGGCCTTTATCCCTGCTTATGTTAGCTCTCCTGGGAAATACACTGTTGCTGTGGAGGTTTTTGCAATCCTGGCCTCTAGCTATGGTTTATTGCTCTGCATTTTTGCCCCGAAATGTTTCATCATTCTCTTGAGGCCTAAGAAAAACACTAAGAAACATCTGATGGCCAGGCTCTTCACTCTGTGGCCCTCCTCAGCCCCATCCCTGCTCCTTGTGGGGCTTGTGGGCAGACAGCTGGGGCTCAGGGTGGGGTTACAGGTGGTTCAGACAGTGTCTTGTTCTCGTTGGGGTACACCCAGCAACCAGGGTCTGTTTCAGGATGGAGATGTAGTTATTGGTGGGCTCTTTAATGTTCATTCCAAGCCCCCAGCTATAGACAATGACTTCACTCAGCTGCCTCACTTCAAGCCTTGCACTGGTTTGGAAAATCTTCCATTACAGTATATTTATGCTATGGTGTTTGCGCTGGAGGAAATCAATCACAGTACAACCTTGCTGCCAGGGGTGAAGCTGGGCTACTATATTCGTGATAGCTGTGGCATACCCCTGTGGGCTATGCAGGGGGCACTGTCACTTGTTGGAGGAGACAGCGCCAGCTGTGATCAGCCTGTTCCTTTGATCATTGGTGGTTCCTCATCCGAAGAAGCCAAGATACTCTCCAGATCCCTGGGGCCACTCTCTGTACCTTTAGTAAGCTACACAGCAAGCTGTCCCTGTCTGAGTGACCGGCACCAGTATCCTAACTTCTTCAGGACCATGCCCAGTGATATTTACCAAGCCTGGGCCATTGCCCAGCTTGCCATACGATTCAATTGGACCTGGATTGGGGCTGTGGTAGTAAACAACGATTATGGCCATGTGGCAATAAAGTTATTTCaggaggagactcaggaggCAGGGGTATGTCTGGCATTTGTAGAGACTCTCCAAAGGGAAAACATTGTGAGTGATGCCAGACGAGCAGCCCTCACAATTCAGGCGTCGACTGCAAAAGTGATTCTGATCTTTAACTGGTACACAGATGTGAGGGAACTGTTCCTGCAACTCTCCAAGATAAATGTGACTGACAAACAGTTTGTGGCCAGTGAGGCGTGGAGCACAAGTGGTGATCTTCTCCAAGATCCTGTCACTTCTGTAGTGGCAAGGGGTGTGCTTGGTGTGGCCATTCGAAGTAGAGCTATACCTGGATTTGAAAATTATATCAGAAGTTTGAACCCATCTCGTCATCTCGACAATACGTTCTTAAGAGAATTCTGGGAAAAGATGTTTAGTTGTAGTCCTGGGGCCACACAATTCTCCACATATGCCTCTTCACTACTGTCTCAGTCAGACAGGTTGCTTCAAAAAGCTTCTCAACCACCCTGCAGTGGCACAGAGTCCCTGGAGGGAGTGCAGAATCACTTCACTGATACCTCTCAGCTCAGGGTGACATATAATGTCTACCTTGCTGTTTATGCTGCAGCCCACGCCCTTCACAGCCTTCTCTGCCCCGTCAGAAACAGCTCACCTGGAAACAACAGCCCAACCTGCTCTTCTCTAAAACACATCAAACCCATAGAGCTGTTGCAGCACTTAAACAACGTGAACTTCACAACGCCACAGggtgaaatgttttatttccaAGACGACAACACTCCAGCAAAGTACGACCTTCTCAACTGGCAGAACACCCCTGAGGGGTCACTCAAacttgttgtgattggtcgtgtGGACGGGTTTGACCTCCACCTAAACGAGTCAGCTATTCAGTGGAGCACTGGATCCAATCAGGTGCCTACTTCAGTGTGCAGTGAGAGCTGCCCCCCAGGCACCCGAGAGGCCAGCAGGAAAGGTGAACCTCTCTGCTGCTTTGACTGTATCCCATGTGCTGATGGGGAGATTAGCAATCAAACTGGTTCCCTTCACTGTGAGCGTTGTCCATTAGAGTTTTGGTCCAATGCTAAACGAACTGCCTGCATCCCTCGCCAGCTGGACTTCCTTTCCTTTAATGAAACTTTGGGCATTGCCCTGACTACAGCAGCTGTGTCTGGTACTGTGGTGACAACAGCTGTATTTGTAGTTTTTCTTTACTATCGTCAAACACCTATGGTACGAGCCAACAATTCAGAACTGAGCTTCCTGCTTCTCCTGTCCCTGAAGCTCTGCTTCCTGTGCTCACTGGTGTTCATTGGTCGTCCATCAGTCTGGGCTTGTCGGTTCCAGCAGGCAGCTTTTGGGATCAGCTTTGTACTTTGTGTTTCCTGCCTCCAAGTGAAGACCATAGTAGTTTTGGCAGCTTTCCGCTCAGCTCGGCCTGGTGCTGAAACCTTGATGAAGTGGTTTGGTCCAGGCCAACAGAGAGGAAGTGTTTGCCTCTTTTCCTGTTTACAGgTTTTCATTTGTCTTATTTGGCTATCGCTCAGCCCCCCTATGCCTCAAGCTGACTTGGATATCCCAGGGTTAAAGGTCACCCTCAAGTGTGCCATGTCCTCTGTGGTGGGCTTCTCTCTGGTTCTGGGTTACATTGGCCTGCTGGCCTGCACCAGTCTCCTTTTGGCCTTTCTTGCTCGGAAACTCCCTGACAACTTCAATGAGGCCAAACTGATCACCTTCAGCATGCTGATATTCTGTGCTGTTTGGATAGCTTTTGTTCCTGCTTATGTTAGCTCTCCTGGAAAATATGCTGTTGCTGTGGAGATTTTTGCAATTCTCGCCTCTAGCTATGGTTTACTTTTCTGTATCTTTGCTCCAAAGTGTTTCATCATTCTTTTGAGGCCAGATAAAAATACTAGGAAACACCTGATGGCCAGGTAGCGGAGAATATTAACAATGCACCTAATTCATTATTTCCTTATCAATCT

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789236.1 True 5114 mRNA 0.49 23 34871873 34888054

Neighbor

gene id symbol gene type direction distance location
LOC120549655 LOC104964223 coding downstream 2453 34865640 ~ 34869420 (-)
LOC120547817 NA coding downstream 105740 34748462 ~ 34766133 (-)
LOC120548153 NA coding downstream 127287 34735651 ~ 34744586 (-)
LOC120551691 NA coding downstream 137252 34717486 ~ 34734621 (-)
LOC120572251 NA coding downstream 162414 34700102 ~ 34709459 (-)
plch1 plch1,LOC103364399,LOC101474427,LOC107380077 coding upstream 12376 34900430 ~ 34972206 (-)
c18h3orf33 NA coding upstream 84950 34973004 ~ 34976362 (-)
zgc:112083 NA coding upstream 130192 35018246 ~ 35027432 (-)
map6b LOC103364403,LOC102775646,LOC100702126,LOC101476458 coding upstream 146638 35034692 ~ 35040789 (-)
LOC120548171 LOC100701857,LOC103364405,LOC102289028,LOC102776134 coding upstream 153067 35041121 ~ 35046088 (-)
G21685 NA non-coding downstream 85637 34785923 ~ 34786236 (-)
G21665 NA non-coding downstream 440575 34431071 ~ 34431298 (-)
G21640 NA non-coding downstream 701378 34169362 ~ 34170495 (-)
G21620 NA non-coding downstream 713427 34090331 ~ 34158446 (-)
G21575 NA non-coding downstream 877620 33993936 ~ 33994253 (-)
G21716 NA non-coding upstream 21311 34909365 ~ 34909721 (-)
G21779 NA non-coding upstream 127993 35016047 ~ 35016280 (-)
G21805 LOC107597532,LOC100125490,LOC103474213,LOC103139657 non-coding upstream 348021 35236075 ~ 35240308 (-)
G21854 NA non-coding upstream 533227 35421281 ~ 35421721 (-)
G21885 NA non-coding upstream 694427 35582481 ~ 35582706 (-)
LOC120570300 NA other downstream 307328 34555835 ~ 34564545 (-)
G21674 NA other downstream 389840 34481458 ~ 34482033 (-)
LOC120548089 gpr149,LOC102798740 other downstream 767053 34093140 ~ 34104820 (-)
mfsd1 mfsd1 other downstream 1242605 33613429 ~ 33629268 (-)
LOC120549978 NA other downstream 1728610 33129495 ~ 33143263 (-)
dyrk1ab dyrk1a other upstream 159124 35047178 ~ 35096251 (-)
zgc:77784 LOC103362442 other upstream 377241 35265295 ~ 35336232 (-)
lrfn1 lrfn1 other upstream 1088688 35976742 ~ 36264039 (-)
taok1a LOC103356490,LOC104958432 other upstream 1421863 36309917 ~ 36330409 (-)
dph1 dph1,LOC102789142 other upstream 1572625 36460679 ~ 36550114 (-)

Expression


Co-expression Network