usp16


Basic Information

Item Value
gene id usp16
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40260360 ~ 40268274 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789418.1
AGAAACAGCGGCCCCCCCATTACATTTTGTtcctctgttgtctgtctggcatGTGTCCGTTTTTCTGCCAAATCAGCGGAGTGGGTTCTCGCCAAAATTGAAACTTTGTAGAGCCCCCTTTCTTATCCGGACGCTTGCGCATTTTAAAGCCGTGACGTTAATCAGTAAGCCAAGTTGACTCTGTCCGGATGAGAGGATTAATCCACACAAAGTAAACGAAAGTGAAAACCGTGAAGGTTTTGGGCTCCGGTTGAGACAGTGAACATGGGAAAGAAAAGGGGGAAGGACAAGAGCTCCAGAGAGGACGATGACATTGAACTGACAGGTCCATCCTGCAGGCATATTAAGAAGGGGACAGACCAAACTCTTCTAAAGAAACTCTCTGGGAATTCTGATTGGACGAGTTGCCAGGATTGTAAGcatgaagaaaataaagaaaatatcagctcCACCGCACCCCAGGACTctgaagaggaaaaagaagcCGCACCCGTATGGATGTGCTTAAAATGTGGCCATAGAGGATGTGGACGGAACTCTGAGAACCAGCATGCCATCAAACATTCTGAGACTCCTCGGTCGGATCCACATTGCCTGGTGATCAGTCTGGACAACTGGAGTGTGTGGTGTTACATATGTGATGATGAAGTCCAGTACTCAAGAACCGGACATTTGGCTCAGCTGGTGACCAACCTACAAAAGCAAACCTCTGCAGATCCCTTAAAGAGACCGCAGAAAAGAGTGAAGGAGGAAGACAGCTTGTTGGATGTTGATCAGAAGACAGACACTGTAAAAGCAGATAAAAGTGAAGACatggaaaacaaagaaaacaaggaCCGCCAAAAGAAAAATGCCAAGAAAGAGGGTGTTGGGAAATCGCAAAAGTCTGGCACATCGGAAGACAGTGGTGGTGTTTCAGTAAAGGGGCTGAGCAACCTGGGAAACACATGTTTCTTTAATGCAGTCATTCAGAATCTCTCTCAGACACAGCTCTTAAGACAGACTCTCAACAAAGTGACCCGAGAGAAAATGAGTCTTAACATTAAACCTGTTGCCTCATCAGATCTGGAGCCTATCCTAATGCAGTTAGACCAGCCTGGATCACTTACTTTGTCTATGTGTCAACTACTCAATGAGATCCAGGAAACCAAGAAGGGTGTGGTAACACCGCGGGAGTTGTTCACACAAGTTTGTAAAAAGGCTGCCAGGTTCAAAGGATTTCAGCAGCAAGATAGCCAGGAGCTGCTGCGCTACCTTCTGGATGGGATGCGAGCAGAGGAGATCAAAAGAGTAAGCTCAGGGATCATGGAGGCATTGAAAGAATCTAGAAAAATCACAGATGGAGAGCAGCTGAAAACATTAGTTAAAGAGTATGAGAAAAATGGTTTTCCAAAAAACTTTGTCGACCAAGTTTTTGGTGGGGAAACGACCAGCACTATAATGTGTCAGCAGTGCAAAACGGTGTCTGTAGTCACAGAGATGTTTTTGGATCTTTCCCTTCCTGTTTCGGACGAGGCATTCAGAAAGAAGAACCAGAAATTGAAAAATGGCTCCATGTTGAATCATTGTGCAGAACAAATGAAATTGGTTGTATTGTTTCCTTATCTTGGCTTACAGCATCAAAAGAGGCAACAGAAGATTGAGGGCAGAGTCACTTTGGACAGTCTCTCATCTCCGAGCCACACGGAGAGCAAACCGACTGATCCTACTGCAGATGCAAAAGACGGGGAACATTCTGACAATGACACGCATGAAGAAGCCTCACTGAGTGAAGGAAATCCTGCACAAGTCTGCGTGTCTGAACAAGACCAGAAGCCCAGTGACGTGGTCCAGGATGAGAAGGAAAACGAAGAGGACGAGGATTCAGTGATCGACTGCGACTCCTCACCTACGTCATCAGTCAACAACCGCTTTACCGTCTTATCAGAGGAGCAGCACTCAAAGGAGAGCGTCTGCGACGATGACATGGATCAGGAAGGAGAAGAGGACACGCGGCTGGTGAGTGAAATGGAGAAAGTAACCCTGGATGATGCCTTCATAGAAGAGCCTGATGCTGTGGAACAAAGCATGGAGATTGAAGATGAGCCACTGGAAGCTAAAGAGTACACTGTAGTAAGTCAGGACCCGGAGCTGGCCTTCCAAACACTGGCTACCAGGACAGCCCCTGACAAACAGGAGTGTTCAGTCCAGTCATGCCTTTTTCAGTTCACAGAAGTGGAAACCCTCACACAGAACAACAGCCTGCTATGTGTCACTTGCACTAAACGGCAGCCAAACAAAGACCGAGCTGGAGGATCCAAGAAGAATGAATACACTGATGCCTTGAAGCAAATGTTGATCTCTTCTCCCCCACCAGTGCTTACCCTTCATTTGAAGAGATTCCAACAGAATGGATACAGCATTTGTAAGGTGAACAGACATGTCCAATTCCCCCTGATACTGGATCTAGCTCCTTTTTGTGCTGTTAAATGTGAGAACTTGACGGAGGGAGATACTCAGATTTTGTACAGTTTGTATGGTATCGTAGAGCACAGCGGAACAATGAGGTCAGGCCATTATACGGCGTATGTGAAAGCACGACCAGAGTGCCCTAAACCCTCATCCAACGGATTCGCAGCTGAAGGACATGCAGAGCCACCCAGAGGATCGTGGTTCCATATCAGCGACACAAGCGTTCAGCCCGTGAGCGAGAGTAAAGTCCAGAGTTGCCAAGCCTACCTCCTCTTCTATGAAAGAATTATTTAATCCAACTGTGCCTCACTACTCAGGAAATCCCAACAACCTACCTGCTGCTTCAGCTCCACAATATAAAGGATCTAAAACGGTTAACCAACCAGTTTTGACTCAAACCTGGGCTGTGATGAAATGTTATTGATTATGCAGAAGGGACATTTGACAGTGTTGACATTTTCATCACAGTGGTTTCACAAGGTGTTTTTAAGAATTACACAGGACCAGCTGTATGTTTCTCACACTCACGGGAATATGGCAAGGTGTGCCATGAGAAGTCGAGATGGACATTGAACAGATTGTGGTATAGAGTGCTGCAGAAATGAGTCCCGAAACCCGGATATGAGTTAGGATTTTTGCACTTCCGGTTCCTTCGTCTCAAAGTCGATCGTAACAGGCTTAAGAGATTTCTGCTTTTTGTTCTACAACATAAAATCCGTCGGTAAATACTCCTCATGAGAATTTTGAAGCTTTTACGAGTCTTAAAAAAGGAGGTTGCTAACTGACACGGCAGAGGTTGTCAAACGTCATCACGCCGAACACACAAAATCAGTCGGCGATGTAGTTCGTTTACAGCCTAATGTTAGCTTTTTACTTCCAGGGATTGCatttgtacttaaaaaaaaaatcataaatgtTGTCTTAATTTGTGATTATTATCTTGCTGAACACATTGTGTATACATCAAACACTTTTGTTTGCCACAGATCTTATTTTCCGCAATAATCCAAAATCAAAAGGAAAAATCCTGTTGGCTTTTTGTCGAGGGAACCAGGGCTGGCCTACAAAAATACTTCCCTGCCGCGCGCCATTAAACAGGACCTGTATGTCATATCATGGGGTATATACATGGCAAGGTGTGCAAAGGAACTCAAGATGGACTTGGACAGATTGTGATATTGGATTTGTACACATGACAAAAATCAATTTCCAGAGATAAATTAAAGTTGGAGGAGAAATAAtttgtaaaaca

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 16

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789418.1 True 3703 mRNA 0.45 18 40260360 40268274

Neighbor

gene id symbol gene type direction distance location
LOC120544420 bach1 coding downstream 107 40227369 ~ 40260253 (-)
LOC120546558 LOC103363424,LOC104943694 coding downstream 347600 39904112 ~ 39912760 (-)
LOC120546419 LOC104923287,LOC104947775,LOC103363426,LOC101479268 coding downstream 358913 39868408 ~ 39901447 (-)
LOC120546408 NA coding downstream 359109 39892209 ~ 39901251 (-)
LOC120546381 LOC103363428,LOC101062185,LOC102204297 coding downstream 482440 39759961 ~ 39777920 (-)
stoml3a stoml3,LOC104925222,LOC101073007,LOC105935001 coding upstream 556479 40824753 ~ 40832594 (-)
slc25a15a slc25a15,LOC103152068,LOC106945435,LOC103475195 coding upstream 567394 40835668 ~ 40844838 (-)
cog6 cog6,LOC102796367 coding upstream 655751 40924025 ~ 40955064 (-)
trnak-uuu_7 NA coding upstream 763532 41031806 ~ 41031878 (-)
lpar6a lpar6,LOC104952799,LOC101069375,LOC103363548 coding upstream 848404 41116678 ~ 41119295 (-)
G22919 NA non-coding downstream 12268 40247221 ~ 40248092 (-)
G22918 grik1,LOC102307112 non-coding downstream 16330 40241583 ~ 40244030 (-)
G22917 grik1,LOC104963619,LOC107585794,LOC102776120,LOC103378149 non-coding downstream 20012 40239332 ~ 40240348 (-)
LOC120544464 NA non-coding downstream 34041 40184747 ~ 40226319 (-)
G22826 NA non-coding downstream 335909 39924213 ~ 39924451 (-)
G22936 NA non-coding upstream 19364 40287638 ~ 40287869 (-)
G22962 NA non-coding upstream 123074 40391348 ~ 40489408 (-)
LOC120545373 NA non-coding upstream 257295 40525569 ~ 40561333 (-)
LOC120545377 NA non-coding upstream 258722 40526996 ~ 40531357 (-)
G22972 NA non-coding upstream 263144 40531418 ~ 40536651 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 227204 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 1524537 38727508 ~ 38735823 (-)
robo2 NA other downstream 1611761 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 2514078 37732841 ~ 37746282 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 2562221 37692438 ~ 37698139 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 21731 40290005 ~ 40470176 (-)
cntn5 NA other upstream 1761399 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 2968408 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 3432697 43700971 ~ 43716741 (-)
smco4 NA other upstream 3501792 43770066 ~ 43789435 (-)

Expression


Co-expression Network