ercc2 (ercc2)


Basic Information

Item Value
gene id ercc2
gene name ercc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13401645 ~ 13417034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789782.1
aagaagaagaagaagcagaagaagaagaagaagaagcagcagcagcgtctGCGCATCAATGCATCCTGTGTTTTTACAAACACTAAAGTTATAAATgacaatataaaaacaacaaaagtgaCATACAAAGAAGAGGAGCGGCTGCTACacgttttacaaaaatgaaGCTCAACATCGAGGGTCTGCTGGTGTATTTCCCATATGACTACATATATCCTGAGCAGTACTCCTATATGCTTGAGCTGAAGAGGACTCTGGATGCCAAGGGTCATGGAGTCCTGGAGATGCCATCAGGAACAGGGAAGACcatctctctgctgtctctcatCATTGCCTACCAAAAGgcttTTCCTTTGGAAGTGACCAAGCTAATATACTGCTCCAGAACAGTTCCCGAGATCGAGAAGGTCGTGGAGGAGCTGAGGAAGTTGATGGAGTTTTATTCCAAACAAACTGGAGAGAGCAACAACTTCCTGGCTCTGGCTCTTTCCTCCAGAAAAAACCTCTGCATCCACCCGGAGGTGAGCGCTCTGCGCTTCGGTAAGGAGGTTGATGGGAAGTGCCACAGTCTGACGGCATCGTACATTCGCGCACAACGCCACAGTGACCCCGACATGCCTGTGTGTCGCTTCTATGAGGAGTTTGATGCAGTCGGACGACAGGTGCCTCTTCCTGCTGGCGTCTACAACCTCGACGACCTGAAGGAATTCGGCAGGAGGAAAGGCTGGTGTCCTTATTATCTGGCACGCTACTCTATCCTGCATGCCAACATTGTTGTGTACAGCTACCACTACCTGCTGGACCCCAAGATTGCTGACCTGGTGTCCAAAGAGCTGGCCAAGAAGTCTGTAGTGGTGTTTGATGAGGCTCATAATATAGACAATGTGTGCATCGACTCCATGAGTGTGAACATCACCAGGCGAACACTTGACCGCTGCCATACCAACGTGGACACTCTTCAGAACACGATAGAAAAGATAAAGGAGACGGACGCTGCTAAACTGAAGATGGAGTACAGGCGATTGGTGGAGGGACTGAAGGAAGCTAATGTTGCCAGGGAAACGGACGTGTACCTTGCAAATCCAGTGTTACCAGATGAAATTCTGAAAGAGGCGGTCCCTGGCAATATTCGCACAGCAGAGCACTTTGTTGGTTTCTTGAAACGTTTCCTGGAGTATCTGAAGTCCCGTCTGAGGGTCCAACATGTCGTACAGGAGAGCGCCCCACAGTTCCTCAAAGACATCTTCGACAAAGTCTGCATCGACCGCAAGCCTCTCAGGTTTTGTGCAGAGCGGTTACAGTCGCTACTACGTACTCTGGAGATTGCTGACATCGCAGACTTCTCAGCTGTTACTCTCATCTCTAACTTTGCTACCTTGGTCAGCACCTACAGCCAAGGATTCACAATAATCATTGAGCCCTTTGAAGACAGAACTCCAACCATTGCCAACCCTGTGCTGCACTTCAGCTGTATGGATCCATCTATTGCCATCAAACCTGTTTTTCAAAGATTTCAGTCGGTCATCATCACCTCGGGGACTCTCTCTCCGCTGGACATCTATCCCCGAATCCTCGACTTCCGCCCTGTTACCATGGCATCCTTCACCATGACGCTGGCACGGACCTGCCTCTGTCCTCTGATTGTTGGCAGGGGAAATGATCAGGTGGCCCTGAGCTCAAAGTTTGAGACCAGAGAAGACTTTGCTGTGATTCGTAATTATGGCAACCTACTTCTAGAGATGTCTGCGATCGTTCCCGATGGCATTGTGGCATTCTTCACCAGCTACGTCTACATGGAGAATATAGTGGCGTCTTGGTATGAACAGGGTATCCTGGAGAATATCCAGAGAAACAAGCTGATCTTCATTGAGACTCCGGATGCTGCAGAGACGAGCATGGCCCTGGAGAAATACCAGGAGGCATGTGAGAACGGCAGAGGAGCGATCCTCCTGTCTGTGGCCAGGGGAAAGGTGTCTGAAGGAATAGATTTTGTGCATCATTTTGGGCGGGCCGTCATCATGTTTGGAGTGCCTTATGTTTACACGCAGAGCCGCATCCTAAAGGCTCGTCTGGAGTACCTTCGGGATCAGTTTCAGATCAGAGAGAATGACTTTCTGACGTTTGATGCCATGCGTCACGCAGCCCAGTGTGTGGGCAGAGCCATCCGAGGAAAGACCGACTATGGGCTCATGATCTTCGCCGACAAGCGTTATGCCCGAGCAGACAAACGGGGGAAGCTTCCTCGCTGGATACAGGAACACATCAATGACGGCAGTCTGAACCTCACCGTGGACGAGGCCGTCCAGCTGTCCAAGCACTTCCTGCGACAGATGGCTCAGCCTTTCAGACAGGAGGACCAGTTGGGTCTGTCTCTGTTGACTCTGGAGCAGCTGGAGTCAGAGGAGATGTTGCAGAAAATCGCTAAGATCGCTCATCAGACCTGAAGTATATGCACTGTGTACTGTCAACGCACATGATGGGGTCAGCACCCGTTAACAATGATGTGTCAACTAGCAGATGCAACTTAAtgaaaaagattttgtgtgctacatgtacagtacagggtTTACCACATCAGAACAGTTTAGATATGTCCGAGAGGTGGTTGGTCATCACTAAACAAACCATGACAAGTATTTGAAACACATGTTGGCTCAGCTCTGGTGGTTACAATAATGATTTCTGATTGGATAACTGTCAGTCGGTGTGTAGTAATTACACAGAAAAGACACAAGCAGTCAGTATTTCAGATCACACACTGAGTCTACAGAATATTGGCACCACAGCTCTCTCACCCACACCCTCTACGTAGTGCTGCGTTTCTCCACTCTCTGTATGGGAAAACATCACATCGGATTCAAACATATCAAACACATTTAGTCAGATTATAACTGATTTTGCAGTTTTATGGAGATGGTCCTAACATTTTGTGTATTCAGTAGTACAGATCAGTACAGAAATAATGAATCCTTTCCAAAAACGTATGAATCACTTTTCAAACCAAAAATGATTAGTGCACGTTGTGCTGTTTCTGAAAGTGTACTGTTTTGATTTAAACAAGACGAGCAGATGTGTTAAGTTCATCAGTGGGTCAACATGTTGCATTAACTACAGAAACGTTATTCCATCTGTGGGTGTAACGTTGGTCCATATAGCGTCTGTCATACAGACTACTGTACAtgaatactgtatgtacattttATACTGAACGTGAATATCTGTATGTTTTTCAACCAAGTTGGAATAATAAATGTTTGTATTCAACA

Function

symbol description
ercc2 Predicted to enable DNA helicase activity and damaged DNA binding activity. Predicted to be involved in several processes, including nucleotide-excision repair; positive regulation of mitotic recombination; and transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; gonad; heart; male organism; and precaudal vertebra. Human ortholog(s) of this gene implicated in several diseases, including acoustic neuroma; acquired immunodeficiency syndrome; carcinoma (multiple); hematologic cancer (multiple); and xeroderma pigmentosum (multiple). Orthologous to human ERCC2 (ERCC excision repair 2, TFIIH core complex helicase subunit).

NR:

description
TFIIH basal transcription factor complex helicase XPD subunit

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10844 ERCC2, XPD; DNA excision repair protein ERCC-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789782.1 True 3266 mRNA 0.47 23 13401645 13417034

Neighbor

gene id symbol gene type direction distance location
zgc:154093 NA coding upstream 6086 13384200 ~ 13395559 (+)
bbc3 NA coding upstream 95816 13287879 ~ 13305829 (+)
zmp:0000000529 LOC102308420,LOC102195538,LOC105930185,LOC107092488,LOC101077945 coding upstream 302107 13088907 ~ 13099538 (+)
LOC120551276 LOC101468279,LOC102195252,LOC100709375 coding upstream 314273 13041188 ~ 13087372 (+)
trnak-uuu_4 NA coding upstream 398238 13003335 ~ 13003407 (+)
ckmb ckm,LOC104935593,LOC107094873 coding downstream 41938 13458972 ~ 13464796 (+)
si:dkey-182i3.11 NA coding downstream 120157 13537191 ~ 13541026 (+)
blvrb blvrb coding downstream 282958 13699992 ~ 13708027 (+)
sertad3 NA coding downstream 293875 13710909 ~ 13716396 (+)
polr1g NA coding downstream 495598 13912632 ~ 13916358 (+)
G16726 NA non-coding upstream 3468 13396604 ~ 13398177 (+)
G16717 NA non-coding upstream 128258 13272974 ~ 13273387 (+)
G16641 NA non-coding upstream 162687 13237006 ~ 13238958 (+)
G16627 NA non-coding upstream 173621 13220436 ~ 13228024 (+)
G16628 NA non-coding upstream 225272 13175700 ~ 13176373 (+)
G16759 NA non-coding downstream 239 13417273 ~ 13418264 (+)
G16790 NA non-coding downstream 145057 13562091 ~ 13649236 (+)
G16792 NA non-coding downstream 150610 13567644 ~ 13591374 (+)
G16824 NA non-coding downstream 324507 13741541 ~ 13851363 (+)
G16842 NA non-coding downstream 488212 13905246 ~ 13905806 (+)
zc3h4 NA other upstream 41656 13340500 ~ 13359989 (+)
hif1al NA other upstream 264611 13107862 ~ 13137034 (+)
G16590 actn4,LOC102210441 other upstream 479176 12868830 ~ 12922469 (+)
LOC120554522 NA other upstream 770781 12630674 ~ 12630864 (+)
LOC120552034 LOC104947607 other upstream 945062 12442130 ~ 12456583 (+)
G16788 LOC103364096,LOC103373880 other downstream 139245 13556279 ~ 13562415 (+)
G16981 LOC104952532,LOC103377862,LOC106581065,LOC106612819 other downstream 1019013 14436047 ~ 14441693 (+)
LOC120547056 axl other downstream 1191564 14608598 ~ 14638950 (+)
rasgrp4 hnrnpul1,LOC104955748,LOC103368736,LOC102790390 other downstream 1320068 14737102 ~ 14760824 (+)
LOC120572787 NA other downstream 2020137 15437171 ~ 15467407 (+)

Expression


Co-expression Network