yap1 (yap1)


Basic Information

Item Value
gene id yap1
gene name yap1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 41795353 ~ 41827949 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790361.1
gcaaaaagtttttttttttttcctgctccagaAAGTGAGCTGCGGAGATTTGTTTTATACCAACCGAGGACTCTTTCTTAGCAGAATATTCTCCAACAGCTTCCACTTTGGCCCAAAAACAGAAGAAGTGAGacgtgtgttgtgtttttatttttttttcgtcTTTTGTGGCTGCgtctgcatcttttttttttttttttttttggaaaagtcGGGGCCGGGACGACAACACAGATTCCAGTGTGGAGCAGATATGCGCTTTGTTACATTCACAAGTATGCCAGCAAGAAACAACAGGAAAGCGCTGTCTTTCACCGCAGATTTCGACAGCTAACACACTTTTGGAGAGAATAAAGCGCTCGGCTGTTAGACTTTAGAATGACTCGGGGTCACTTCTACTGAGTCCCGTCGAGATTTCCTGCTGCTGTGTGGAagggagaaaaaagaagaaaaaaaagtttgggattggctcaaactttttttttttgtcagtttctgAACGCGACATTTTCGGACACATAAAGTTCGCAGACCGTTCTGGGACAATGGATCAGCATAACCCTCCTGCCGGACACCAAATCGTCCACGTACGGGGCGACTCTGAGACCGACCTGGAGGCTCTGTTTAACGCCGTGATGAACCCGAAAAACACTATCGTGCCCCCTTCCGTACCCATGAGGATGAGGAAACTGCCAGACTCCTTCTTCAAACCCCCTGAACCAAAGTCCCATTCTAGACAAGCCAGCACCGATGCTGGGAGCGGCGGAGTACTCACCCCCCACCATGTCCGCGCGCACTCGTCCCCGGCCTCCCTGCAGCTGGGAGCTGTCACGGGTCTGTCTGGCATGCCCCCCCCAGGTGCTGCCCCTCAACATCTGCGTCAGTCTTCCTATGAGATTCCCGATGATGTGCCCCTGCCCCCGGGCTGGGAGATGGCCAAAACCCCCTCGGGCCAGAGATACTTCCTCAACCACATTGATCAGACCACCACTTGGCAGGATCCTCGCAAGGCCCTGCTCCAGATGAACCAGGCCCCCCCACCCAGTTCTGTGCCAGTCCAGCAACAGAACATTATGAACCCAGCCAGTGGTCCTCTCCCTGAGGGCTGGGAACAAGCTATTACATCCGAGGGAGAAATTTACTACATCAACCACAAGAACAAGACCACATCCTGGCTCGACCCACGACTTGACCCACGCTTTGCCCTGAACCAGCAGAGGATCTCCCAGAGTGCTCCGGTGAAGCAGGGAGGGCAGCTCCCTCCCGGAATCATGGGAGGCAACAACCAGATGAGACTGCAGCAGATCGAGAAGGAAAGGCTGCGGCTGAAGCAACAGGAGCTGCTTCGGCAGAGACCACAGGAGCTCGCTATAAGGAATCAGCTGCCTACCAGCATGGATCAAGATGGCAGCACAAACCCTGTGTCCTCCCCCATGGCCCAGGATGCCCGGACCATGACCACCAACAGCTCTGACCCATTCCTCAACAGCGGGACCTACCACTCCAGGGATGAGAGCACAGACAGCGGCTTGAGTATGAGCAGCTACAGCGTCCCTCGCACTCCAGATGACTTCCTCAACAGTGTGGATGAGATGGACACAGgagacTCTCTCCCACCCTCCATGGCGACACAGCCCAGTCGTTTCCCCGACTACCTGGACACCATCCCGGGAACAGACGTGGACCTGGGCACCCTGGAGAGTGAGAGCATGGCGGTGGAGGGCGAAGAGCTGATGCCCAGTCTCCAGGAGGCCCTGAGCTCCGACATCCTCAACGACATGGAGACGGTGCTGGCAGCTACCAAGATCGACAAGGAGAGCTTCCTCACGTGGTTATAGAAGATCCGAGCAGGGCGCTCCGTACTCCTCCTCGTCACACTCTGAACTGCTGCCTGCTCTACTCTGTGAAGGAGTCACAGACGCTTTTTAAACAAGACATTTCAGCGAGCCTCTCTGGACTTCTGTTTCTGGCTCGCCGTGTATAAGGCCAAGCTCTCCTGAGGCAgtgttgttcttttctttttcactggTGTGTTATCTCTTTATTTTGTCTGTGTCTTCAAGGCTGGCCCATGAACAGACAATTACACGAGGGTCCCCAAATCTTTCGCAGATCTGTCCGTGAATCTAGGGCATCTTTCTCTGGTCTCCCCTCATAGCTGAGCTGAGCTGGTGCATGCACGCTCTCCTGCAAGGACTCCCATCATCAGACGTCACCCCTCAGCTCTGGTGCCTCTTTTTCTTGCAACATAGCATAAAGCAGCACTACTTAACTGCATTTGGGACTATTGCATCTAGCTTAAGTAGCTTTATATTTGGCCttgtatgtttttattcttcttttttttttgtgtgtgttttcaacgAGCCTGAGCAACCAAAAATGATGTATTTGAAGCATAAAGAACAATACTGATTTGGAGTAAAGGTAACGTGAGGCCCAGTTTGATCACGTTAGCTTTGCTGgg

Function

symbol description
yap1 Involved in several processes, including dorsal/ventral axis specification; embryonic hemopoiesis; and heart formation. Acts upstream of with a positive effect on BMP signaling pathway. Acts upstream of or within several processes, including animal organ development; fin regeneration; and positive regulation of glutamate-ammonia ligase activity. Located in chromatin and nucleus. Is expressed in several structures, including central nervous system; digestive system; fin; mesoderm; and tail bud. Used to study coloboma. Human ortholog(s) of this gene implicated in uveal coloboma-cleft lip and palate-intellectual disability. Orthologous to human YAP1 (Yes1 associated transcriptional regulator).

NR:

description
transcriptional coactivator YAP1

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K16687 YAP1, Yki; transcriptional coactivator YAP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790361.1 True 2467 mRNA 0.52 8 41795353 41827949

Neighbor

gene id symbol gene type direction distance location
ndufc2 ndufc2,LOC101465984,LOC102192131,LOC100708544 coding downstream 516649 41276007 ~ 41278704 (-)
rcbtb2 rcbtb2,LOC100697269 coding downstream 646246 41132687 ~ 41149107 (-)
lpar6a lpar6,LOC104952799,LOC101069375,LOC103363548 coding downstream 676058 41116678 ~ 41119295 (-)
trnak-uuu_7 NA coding downstream 763475 41031806 ~ 41031878 (-)
cog6 cog6,LOC102796367 coding downstream 840289 40924025 ~ 40955064 (-)
cep126 NA coding upstream 5555 41833504 ~ 41852550 (-)
LOC120547924 NA coding upstream 59035 41886984 ~ 41996347 (-)
ttc36 ttc36 coding upstream 439125 42267074 ~ 42269422 (-)
fat3a fat3 coding upstream 565339 42393288 ~ 42621960 (-)
gal3st2 LOC104950586 coding upstream 911687 42739636 ~ 42768566 (-)
G23258 NA non-coding downstream 50 41768118 ~ 41795303 (-)
G23161 NA non-coding downstream 479270 41315871 ~ 41316083 (-)
G23151 NA non-coding downstream 503443 41291705 ~ 41291910 (-)
G23141 NA non-coding downstream 537987 41255374 ~ 41257366 (-)
G23127 NA non-coding downstream 572891 41170684 ~ 41222462 (-)
LOC120547933 NA non-coding upstream 60664 41888613 ~ 41896183 (-)
G23328 NA non-coding upstream 408719 42236668 ~ 42237159 (-)
G23330 NA non-coding upstream 428604 42256553 ~ 42256963 (-)
G23344 NA non-coding upstream 484606 42312555 ~ 42313214 (-)
G23354 NA non-coding upstream 509713 42337662 ~ 42337866 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 1325177 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 1762197 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 3059530 38727508 ~ 38735823 (-)
robo2 NA other downstream 3146754 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 4049071 37732841 ~ 37746282 (-)
cntn5 NA other upstream 201724 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 1408733 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 1873022 43700971 ~ 43716741 (-)
smco4 NA other upstream 1942117 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 2988679 44816628 ~ 44824993 (-)

Expression


Co-expression Network