Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC120552565 |
| gene name | vstm5 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053113.1 |
| NCBI id | CM020910.1 |
| chromosome length | 48524041 |
| location | 12569129 ~ 12573338 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| vstm5 | Predicted to be involved in filopodium assembly; positive regulation of excitatory synapse assembly; and protein homooligomerization. Predicted to act upstream of or within ventral spinal cord development. Predicted to be located in axon; dendrite; and plasma membrane. Predicted to be integral component of membrane. |
| description |
|---|
| PREDICTED: V-set and transmembrane domain-containing protein 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039790737.1 | True | 1244 | mRNA | 0.47 | 5 | 12569129 | 12573338 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| aqp11 | aqp11,LOC102780836 | coding | upstream | 175291 | 12388572 ~ 12393838 (+) |
| LOC120550477 | NA | coding | upstream | 295306 | 12255637 ~ 12273823 (+) |
| LOC120550122 | NA | coding | upstream | 333378 | 12218910 ~ 12235751 (+) |
| LOC120550138 | NA | coding | upstream | 395433 | 12144299 ~ 12173696 (+) |
| aamdc | aamdc,LOC102795396 | coding | upstream | 491254 | 12073618 ~ 12077875 (+) |
| cep295 | NA | coding | downstream | 14275 | 12587613 ~ 12614479 (+) |
| LOC120554572 | NA | coding | downstream | 49459 | 12622797 ~ 12622987 (+) |
| trnak-uuu_2 | NA | coding | downstream | 424458 | 12997796 ~ 12997868 (+) |
| trnak-uuu_4 | NA | coding | downstream | 429997 | 13003335 ~ 13003407 (+) |
| LOC120551276 | LOC101468279,LOC102195252,LOC100709375 | coding | downstream | 467850 | 13041188 ~ 13087372 (+) |
| G16511 | NA | non-coding | upstream | 665 | 12567794 ~ 12568464 (+) |
| G16484 | NA | non-coding | upstream | 102384 | 12466455 ~ 12466745 (+) |
| G16463 | NA | non-coding | upstream | 148407 | 12416010 ~ 12420722 (+) |
| G16464 | NA | non-coding | upstream | 153189 | 12413499 ~ 12415940 (+) |
| LOC120550541 | NA | non-coding | upstream | 368238 | 12199794 ~ 12200891 (+) |
| G16559 | NA | non-coding | downstream | 35175 | 12608513 ~ 12609663 (+) |
| G16566 | NA | non-coding | downstream | 63855 | 12637193 ~ 12640466 (+) |
| G16568 | NA | non-coding | downstream | 68344 | 12641682 ~ 12646018 (+) |
| G16570 | NA | non-coding | downstream | 74636 | 12647974 ~ 12651118 (+) |
| G16573 | NA | non-coding | downstream | 79352 | 12652690 ~ 12658070 (+) |
| LOC120552034 | LOC104947607 | other | upstream | 112546 | 12442130 ~ 12456583 (+) |
| G16467 | clns1a,LOC102781126 | other | upstream | 159855 | 12395995 ~ 12409274 (+) |
| G16267 | NA | other | upstream | 668256 | 11894504 ~ 11900873 (+) |
| zgc:101731 | LOC106580895,LOC100194580,LOC103372138 | other | upstream | 2063791 | 10388232 ~ 10505338 (+) |
| G15712 | NA | other | upstream | 2565534 | 10002250 ~ 10003595 (+) |
| LOC120554522 | NA | other | downstream | 57336 | 12630674 ~ 12630864 (+) |
| G16590 | actn4,LOC102210441 | other | downstream | 295492 | 12868830 ~ 12922469 (+) |
| hif1al | NA | other | downstream | 534524 | 13107862 ~ 13137034 (+) |
| zc3h4 | NA | other | downstream | 767162 | 13340500 ~ 13359989 (+) |
| G16788 | LOC103364096,LOC103373880 | other | downstream | 982941 | 13556279 ~ 13562415 (+) |
