ech1 (ech1,LOC101464128,LOC102289637)


Basic Information

Item Value
gene id ech1
gene name ech1,LOC101464128,LOC102289637
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12613881 ~ 12620515 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790801.1
ACCGTAGCAGGCTGTTTATAAAAGAgcttgagctaacgttagtagGAAGGAAGGGTTAATGAAAGTTAGTACACTGTTACATTTAGTGGGCTGCAAATTCCCTTTTGGCGCACACAGCAGTCGCAGCACCACTGTTCTTCTTGGCGTGCAGACAACGTTACCACAAAGAGGCAGCTGTTAATAACTAGTTAGCATTAGCTGGCGTCAGTGTGGCTCCacgctaacgttagttaacagCACACTGAGCTACAGAGACAGGCGAAGCAGGTGAAGTGACTTCATTAACGTGTTATCTCTGTTTGCTGCGGTTATATTGACCTCTAAATAGTGTGCAAGGTCCGAAGGGCGATGTTGTCAGTTGCCAGGTCAGCTCTCACGAAATACAGGAGGTGCTGGCTGCCCAGTCGGGCTGTGGTCAGGGCCATGTCGTCCTCAGGCGGTGCCCCCTCCCCTTACACCACCCTCGCCATCAGTCACCCAGCAGAGTCCATCACACACGTAGAGCTGCACCGCCCGGAGAAACGTAACGCCATGAACAGAGCTTTCTGGAGTGAGATGGTGGATTGCTTCAATGAGATAGCTGGCGACCCCGAATGCCGAGTGGTTGTGGTTTCTGGAGCCGGGAAGATCTTCACAGCTGGTATTGACCTGATGGACATGGCCAGCGACGTACTCCAACCGGAGGGCGACGACACGGCCAGAATTTCCTGGAACATGAGAAAAATAATCACCAAGTATCAAGAGACGTTCTCTGTCATAGAGAAGTGTCCAAAGCCTGTTGTGGTAGCTGTTCACGGAGCCTGTGTTGGGGGAGGTGTTGATCTGATCACAGCATGTGACATTCGCCTGTGTACCCAGGACGCCTGGTTCCAGATAAAGGAAGTTGATATTGGACTTGCAGCAGATGTTGGAACTCTCCAGAGACTTCCTAAAGTCATCGGCAGCCGCAGCCTAGTGAACGAGTTGGCTCTGACAGCCAGGAAGCTGTATGCCGATGAAGCCAAAAGCAGCGGACTGGTCAGCCGAGTGTTTGCAGATAAGGAGGCCATGATGGCCGGAGCTCTGGAGATGGCCGGGGAGATCGCCGGTCGCAGCCCTGTAGCGGTGCAGGGCACCAAAGTCAACCTGATCTATTCCAGAGACCACAGTGTAGCAGAGGGACTGAACTACATGGCTACCTGGAACATGAGCATGCTTCAGACTCAAGACGTGATGAAATCAGCTCAGGCCGCCATGGAGAAGAAGAGTCCCAAGACAATAGCTTTCTCCAAACTCTAAACCTCACTGACGCAAAGTTCagatatacaaacacaaaagctgcCATTGTGGCCTTTCTGTGTGAAGGGGAACCACATCTATACTCTCTGGCAATCTGTGGCCACTTGAAGATGATGTAGTGAGATTTAAGATTTGGAGGCTTGAATCCACAGTTGGAAATATGACAGTCCTTCTTGGGATTGGTTTCCAAagaaatgcattattatttggGTGGAAAAGCCTTTTAAACAGCATTTTGATAAGTCATCCATGTGTAAAATTGGAATAATAAGTAAGTTCAGGTTAACCTCTTCCCCCAGATGAtgtcaaactgtaatataacaaGGGATTTTCTGAACTTGtcgctgtaaaaaaaatagctgGTTTTTTAAATCTATAATCGACTTCATGAATGTTTAATCTTATTAAAGAAACTAATCTGGTAAAAATCTGATTTCGAAATAGCCATATTTACCTGTTATTTTCTAAAATGATTTAACAAAAGGCAgattaaaataacttaaaatgcTTTATTGATAAAAACTTAAATTATACACAAACTTAAATTTACAAAAGTGGAACTAGAACACATTCACAGTGTCTGCGTCTGCTTGGCACGAAGTTTCTGTAAGGTTTTCTGTGAAGAGATGGTAGAAAAATATTCAACTCAGAATTCATGCAACTAAAACATTTGGTGCTCACAGTTCTGTAATAAGCCTAGTCTTTAAAAAATTGTTCTCAAACAAACGCTCATGATTCACGCGTTTTTACCTTGTGGAACTCCTTGGCCTTCAGTCGGTTTCTTGCACAAGCTTCCTGTCTGTTCCTGATCGCTTGCTGAAGCTTCACTTCCTCCAGCTGCTTATACAGTCTGcagcaacacacatacactgcaaTGTGAACAACTCTCCCATATTCAAAAACTAGAGTGCTAAAACCAAGATTTGTCAGTGTAGTATGAACTCTGGGACTGCTCCAAAGACAAGGAATTGGGAAAGATGTAATAGATGACACAGAGCACCAAGGGGAATGTTTGGAGTATATTGTACATGTTCTGTGTCAGAACTGAGAacaccaataaaataaaaacattctgcAGGTCCACAAAA
>XM_039790809.1
CACCGTAGCAGGCTGTTTATAAAAGAgcttgagctaacgttagtagGAAGGAAGGGTTAATGAAAGTTAGTACACTGTTACATTTAGTGGGCTGCAAATTCCCTTTTGGCGCACACAGCAGTCGCAGCACCACTGTTCTTCTTGGCGTGCAGACAACGTTACCACAAAGAGGCAGCTGTTAATAACTAGTTAGCATTAGCTGGCGTCAGTGTGGCTCCacgctaacgttagttaacagCACACTGAGCTACAGAGACAGGCGAAGCAGGTGAAGTGACTTCATTAACGTGTTATCTCTGTTTGCTGCGGTTATATTGACCTCTAAATAGTGTGCAAGGTCCGAAGGGCGATGTTGTCAGTTGCCAGGTCAGCTCTCACGAAATGAGGTGCTGGCTGCCCAGTCGGGCTGTGGTCAGGGCCATGTCGTCCTCAGGCGGTGCCCCCTCCCCTTACACCACCCTCGCCATCAGTCACCCAGCAGAGTCCATCACACACGTAGAGCTGCACCGCCCGGAGAAACGTAACGCCATGAACAGAGCTTTCTGGAGTGAGATGGTGGATTGCTTCAATGAGATAGCTGGCGACCCCGAATGCCGAGTGGTTGTGGTTTCTGGAGCCGGGAAGATCTTCACAGCTGGTATTGACCTGATGGACATGGCCAGCGACGTACTCCAACCGGAGGGCGACGACACGGCCAGAATTTCCTGGAACATGAGAAAAATAATCACCAAGTATCAAGAGACGTTCTCTGTCATAGAGAAGTGTCCAAAGCCTGTTGTGGTAGCTGTTCACGGAGCCTGTGTTGGGGGAGGTGTTGATCTGATCACAGCATGTGACATTCGCCTGTGTACCCAGGACGCCTGGTTCCAGATAAAGGAAGTTGATATTGGACTTGCAGCAGATGTTGGAACTCTCCAGAGACTTCCTAAAGTCATCGGCAGCCGCAGCCTAGTGAACGAGTTGGCTCTGACAGCCAGGAAGCTGTATGCCGATGAAGCCAAAAGCAGCGGACTGGTCAGCCGAGTGTTTGCAGATAAGGAGGCCATGATGGCCGGAGCTCTGGAGATGGCCGGGGAGATCGCCGGTCGCAGCCCTGTAGCGGTGCAGGGCACCAAAGTCAACCTGATCTATTCCAGAGACCACAGTGTAGCAGAGGGACTGAACTACATGGCTACCTGGAACATGAGCATGCTTCAGACTCAAGACGTGATGAAATCAGCTCAGGCCGCCATGGAGAAGAAGAGTCCCAAGACAATAGCTTTCTCCAAACTCTAAACCTCACTGACGCAAAGTTCagatatacaaacacaaa

Function

symbol description
ech1 Predicted to enable delta3,5-delta2,4-dienoyl-CoA isomerase activity. Predicted to be active in mitochondrion.

NR:

description
delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial

GO: NA

KEGG:

id description
K12663 ECH1; Delta3,5-Delta2,4-dienoyl-CoA isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790801.1 True 2366 mRNA 0.45 10 12613881 12620514
XM_039790809.1 False 1312 mRNA 0.52 10 12614932 12620515

Neighbor

gene id symbol gene type direction distance location
med17 med17 coding downstream 28383 12573677 ~ 12585498 (-)
LOC120551266 NA coding downstream 46279 12546818 ~ 12567602 (-)
LOC120554567 NA coding downstream 47836 12565855 ~ 12566045 (-)
LOC120554484 NA coding downstream 48989 12564729 ~ 12564892 (-)
LOC120554559 NA coding downstream 51382 12562309 ~ 12562499 (-)
LOC120544471 hnrnpl coding upstream 16651 12637166 ~ 12651075 (-)
LOC120548705 NA coding upstream 256072 12876587 ~ 12907961 (-)
actn4 actn4,LOC106956878 coding upstream 290983 12911498 ~ 12983519 (-)
zgc:85932 LOC102780342 coding upstream 369282 12989797 ~ 13021862 (-)
trnak-uuu_3 NA coding upstream 378452 12998967 ~ 12999039 (-)
G16554 NA non-coding downstream 37298 12576233 ~ 12576583 (-)
G16531 NA non-coding downstream 169872 12443629 ~ 12444009 (-)
G16528 NA non-coding downstream 197968 12413484 ~ 12415913 (-)
G16525 NA non-coding downstream 219044 12394490 ~ 12394837 (-)
G16439 NA non-coding downstream 355257 12257150 ~ 12258624 (-)
G16676 NA non-coding upstream 201914 12822429 ~ 12822922 (-)
G16678 NA non-coding upstream 248366 12868881 ~ 12911173 (-)
G16688 NA non-coding upstream 395110 13015625 ~ 13137068 (-)
G16706 LOC101165163 non-coding upstream 503204 13123719 ~ 13125662 (-)
G16709 NA non-coding upstream 544302 13164817 ~ 13165594 (-)
LOC120554539 NA other downstream 71426 12542265 ~ 12542455 (-)
LOC120554398 NA other downstream 72498 12541220 ~ 12541383 (-)
LOC120554618 NA other downstream 73859 12539837 ~ 12540022 (-)
LOC120554358 NA other downstream 75006 12538712 ~ 12538875 (-)
LOC120554536 NA other downstream 76359 12537332 ~ 12537522 (-)
LOC120544465 islr2 other upstream 5450 12625965 ~ 12630092 (-)
srsf7a srsf7,LOC103358184 other upstream 34090 12654605 ~ 12662190 (-)
slc8a2b LOC102291167 other upstream 43684 12664199 ~ 12855727 (-)
ccdc9 ccdc9 other upstream 604399 13224914 ~ 13261849 (-)
sae1 sae1 other upstream 692928 13313443 ~ 13335153 (-)

Expression


Co-expression Network