LOC120552636 (LOC107395012,LOC103364872,LOC101485936)


Basic Information

Item Value
gene id LOC120552636
gene name LOC107395012,LOC103364872,LOC101485936
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19633493 ~ 19637402 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790820.1
ACTTCTAATTAGCCAGCCTCTTCTTGCTCGCCTCACTTGTCCACTGTGCAGATCCAGATCCTCTCCTCAGGGACCAGGGACCGCTTGGGACCCCTACACTTTTCAGCACCCATCAGACCGCAGTCGGCCGAACTGTTGTGGAACGGCTGCTTTTGGTACCTTTCACCTGGCGACGTCGGTGCGCACCGCAACTTGGATAGAGAAACTGCATCATAGCACGGGTCTTGTTTAATTAGcctttatcatttattttaatgcaGTGACGTAATTTATAGTCTTGGGTTGATTTAAGTTGACTTTATCCTTCTTATCTGAATAGAGGAAGCATAAAATATACACCCGGTCTCTAAATCAACGGTGCTTTTACGCATCAGGTTCGAATAGGTGTAAAGACGCATCGCCGTTACATCTTCAGTTAGAGGGCCCTGGCTTGGTTCGACAGCACTAATTTAGACAAAAACAACTAAGTGACAAACAACCCAGGGTACAAGAAAAACACAGGGGGAGGgagtgacagaaaaaaaacgggagagagagagagagagagagagagagagagagagagagagaaagagagagacacccCCTGGAGACTAGCTAGGAGACCCGGCCCCCGGcctgagagaaggagagagagagtgaggtaGTGAGGGAGTGTTTTAAAGCCAGCAGGAGGCATGATGTCCTACATTAAGCAACCCCATTACGCCGTGAACGGGTTAACGCTGTCCGGCCCGGGCATGGATCTGCTCCACTCCGCCGTTGGATACCCCAACACCCCGCGTAAACAGCGTCGGGAGCGCACCACCTTCACACGCGCACAGCTGGATATCCTTGAGGCTCTGTTTGCCAAAACGCGCTACCCAGACATCTTCATGAGGGAGGAGGTGGCCCTCAAGATCAACCTTCCCGAGTCCCGAGTCCAGGTCTGGTTCAAGAACCGTCGTGCCAAGTgccgccagcagcagcagcaaagcaCTGGCCAGTCCAAACCACGGCCCCCTAAAAAGAAGGCATCCCCTGCTCGCGATGCTAACTCTGAGGCCAGTGCCAATGCCACCAATGGATCATACagccctcctccccctcctccaggCACCGGCATCACCCCCAGCTCCAGCTCTGCCAGCGCCACGGTGTCCATCTGGAGCCCAGCCTCCATCTCCCCGCTGCCAGACCCCCTGTCTGCTTCCACCACCCCCTGCATGCAGCGCACCACCTCATACCCCATGACCTACACCCAGGCCCCAGCCTACAGCCAGAGCTACGCAGGCTCCTCCTCCTACTTCACTGGCCTGGACTGTAGCTCCTACCTGTCCCCCATGCACCCGCAGCTGTCGGGCACCGGAGGCGCCCTGAGCCCCATCACAGCCGCCTCGATGGGTGGGCCTCTCAGCCAGTCCCCCGCCTCACTCTCCTCCCAGGGCTACACAGCAGCCTCGCTGGGCTTTGGAGCCGTCGACTGTCTAGACTACAAGGACCAAGCTGCCTGGAAGCTCAATTTCAATGCCACTGACTGTCTGGACTACAAAGACCAGAACTCCTGGAAGTTCCAGGtcttgtaaataataataagtggGAGGTGGGGAGGGAATGGGATAGGGGAAGAAATGAGAAATTGAACAAAATTGAAGTAGGGTGACCCCAATTTACTTTTGGTGTGTTTTAGAAGAAGGAAGAGACCTTGGGACACAGCAATCAATTAATCATATCGGTTGAACAACTAATCAGCTGAAATAGTTTCTTCATTTTTGCTAGTTCAGAAATATTTGTGTGGAAGTAAACTGATCTGTTGATGCTTGACTTGGTGATTGTAAAAAAGAGATGACAGTTAGTGTTCCTAAGTTAAGCAATATAGAACTCAGCCTTGAAATCAATGAATGGCTGTGTAAAAGGAAAACAAGACTGCGATATCTGTACACGAAAATGTTATTAGTGAGGAAGAACAACAGCTTTAATTGTCCAGCTCAGTGGTTTTGGGCCGAAGTTGTGATTTAAATACAGTGTAACTATATTACTGATCACAAGAGAATTTAAAGTGAACACGCATAAACAAAGGTGGTGACTTGTCACATGCTAAATGCCTCCTTTCGATTGATAACTCAAAAAAAGTAGTTTTGGTTAATAGAAATTCCACCTGCCTCCACTTGGACTACATTTGAAGAGCTTCCACAGTGACCTACAAGTTTACTGCTTAGACAGCCTTGAAATGGACGTGTTAAAGCACAGAACTTACTAGAGCCCAAGCTCATGTTTATTTCTTCCTTAGACCTTGTCTTGTATTTTCtgtgatgtatttcttttataaagCTGCTTTTCATCAGCAAGCTGACTCAAAAAAGCTTTGAGCCAAACGACTCAACTAACCCAAACTGACATGTTAAGGAGGTGTCTTTACAAGGTGGccactaattaaaaaaaaaaaaaaaaaaacatgagaaaaaatgTTTA

Function

NR:

description
PREDICTED: homeobox protein otx5-like

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0007275 multicellular organism development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09326 OTX1; homeobox protein OTX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790820.1 True 2451 mRNA 0.49 3 19633493 19637402

Neighbor

gene id symbol gene type direction distance location
nop53 NA coding downstream 24472 19598150 ~ 19609021 (-)
LOC120548388 LOC104927217,LOC101068162,LOC100693448,LOC106522132,LOC103364869,LOC101175254,LOC102216590 coding downstream 38362 19564218 ~ 19595131 (-)
dmac2 atp5sl,LOC102790974 coding downstream 96952 19533110 ~ 19536541 (-)
sirt2 sirt2 coding downstream 100842 19525721 ~ 19532651 (-)
rinl NA coding downstream 107912 19515263 ~ 19525581 (-)
psma6l LOC107094495,LOC106935416,LOC103474855,LOC103155941,LOC100701743,LOC106914191,LOC102789735 coding upstream 12639 19650041 ~ 19653824 (-)
LOC120545125 LOC106935408,LOC103155939,LOC106914189,LOC103474854,LOC102218288 coding upstream 25856 19663258 ~ 19670571 (-)
sars2 sars2,LOC102787987 coding upstream 33686 19671088 ~ 19681020 (-)
LOC120575197 NA coding upstream 235077 19872479 ~ 19891955 (-)
LOC120575210 tcaf2 coding upstream 255140 19892542 ~ 19906151 (-)
G18179 NA non-coding downstream 4853 19625403 ~ 19628640 (-)
G18155 NA non-coding downstream 90822 19456213 ~ 19542671 (-)
LOC120573122 NA non-coding downstream 92363 19538375 ~ 19541130 (-)
G18127 NA non-coding downstream 228132 19383403 ~ 19405361 (-)
G18002 NA non-coding downstream 399036 19230919 ~ 19234457 (-)
G18184 NA non-coding upstream 11814 19649216 ~ 19649652 (-)
LOC120548779 coq8b,LOC103364879,LOC107395920,LOC108247334 non-coding upstream 117485 19754887 ~ 19755993 (-)
G18216 NA non-coding upstream 214502 19851904 ~ 19856310 (-)
G18329 cep164 non-coding upstream 415818 20053220 ~ 20054134 (-)
G18337 NA non-coding upstream 478883 20116285 ~ 20119606 (-)
LOC120545639 eif4g1 other downstream 1410600 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 1481525 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 1742832 17799999 ~ 17890661 (-)
xaf1 LOC107094331 other downstream 2154590 17472947 ~ 17478903 (-)
G17597 NA other downstream 2702499 16848161 ~ 16930994 (-)
fbxo46 fbxo46,LOC102786997 other upstream 63825 19701227 ~ 19717307 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other upstream 163349 19800751 ~ 19810130 (-)
LOC120547993 NA other upstream 499670 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 1456775 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 1599786 21237188 ~ 21261923 (-)

Expression


Co-expression Network