tubd1 (tubd1,LOC102795212)


Basic Information

Item Value
gene id tubd1
gene name tubd1,LOC102795212
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23788779 ~ 23792976 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790983.1
TTGGGCCGGAAGCGCCATACGTCTCGTGGCGGCAGATAGTATagactttttttgcttttcttttactgtctttgATAGACAGACAGTACGGACACCGCCACCTGCCTACGCTATTAAACAACAAGATGCTGCCAGCTCCGGGAACTCTGCCATGACCATGAGACGTTTCACTCCCAGCGACTGGATGTTCACATGCCCTGACCTGATCGGAAGACTATCGATCCTCCTGGAAAGTCTCCACTCTTCACACCTGGGTGAACATGTCCATAGTAACAGTTCAGCTTGGTCAGTGCGGTAACCAAGTGGGTCACGAGCTGTTTGATATCATCTGCAGCGATGCTCTGGAGGGACAGAGGAAAGTGTACAGCACAGCCAGCTGTGAGCGATTCTTCCACCAAACTACACATGGAGAGCTTGTAGCCAGGGCGGTGCTGATTGACATGGAGCCCAAAGTGATCAACCAGAGTATCAGCAGGGCTGCAAAATCTGGCAGGTGGAGGTATGGAGAGTCTTCACACTTCAGCCAGAAGCAGGGCTCTGGAAACAACTGGGCTAATGGGTACTGTGTCCACGGGCCTCGCCACAGAGCCGTGGTGGAGGAGCTGGTGAGGCGAGAGGTGGAGCGCTGTGACAGACTGGCTGGACTCATGGCCATGATGAGTGTGGCGGGGGGAACGGGTTCCGGGGTTGGTACTTATGCTACTCAGTGTCTCCGAGACATCTACCCCAAGTCCTTTATCCTCAACCACCTGACCTGGCCGTACGGGACTGGGGAGGTCATTGTCCAGAACTACAACTCTGTGCTGACGCTGGCTCATCTCTACCAGCTGTCAGACGCTATCCTGGTGCATGAGAACGACACAGTGCACAGGATCTGCAGTCAGCTGCTCAACATCAAACACATTTCCTTCGGTGATGTCAACGGGGTGATCGCTCACCAGCTGGGCAGCATCCTGCAGCCCGCGCTCACTGCTGACTCCCACGGAGTCTACAGCAGAAATCCTCTGGGTGAGTTGGTGAGCGCCCTCACGTGCCACCCAGAGTACAAGTTGCTTAGTGTGTGCACGATCCCTCAGATGCCTAGTTCCTCCATGGCCTACAGCACGTTCAGCTGGCCAAGCCTGCTCAAACACCTACGACAGATGCTCATCTCCAACACCAAGATGGAGGAAGGTATAGACTGGCAGGTGCGTCCACCGGCCGGCTCTGAGCGGACCAGGAGTTTCACAGGACCCAGCTTTAACACCTCTCTGGCCAATCTGCTCATACTGAGAGGGAAAGAGGTCTACAGCGCAGAAACAGGTGGCTTTGAGGACCCGGCCCTGTACACCTCCTGGCTCTCATCAGAAGAAGCTTTCAACTTGTGGAAATCCCCAGTGCCTTTCAATAAGTATGAAAAATGTGCTACGCTGGTCAGTAACAGTCAGGCTCTGCTCAGACCTCTGGATAACATGGTGGGAAAAGCCTGGAATATGTTTGCGTCCAGggCCTACATCCATCAGTACGTTAAATTTGGGATCTCAGAGGAGGACTTTCTAGACAGCTTTACATCTCTTGAGCAAGTCATCTCCAGCTACGGTCAACTGAGCTAGAAATGGGAAAAACTAATGAGCACCACCTGGCCTTCGGACTGCATGTAGATATacgagaatat

Function

symbol description
tubd1 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within cell projection organization and microtubule-based process. Predicted to be located in centriole; cilium; and nucleus. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBD1 (tubulin delta 1).

NR:

description
tubulin delta chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K10390 TUBD; tubulin delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790983.1 True 1654 mRNA 0.53 8 23788779 23792976

Neighbor

gene id symbol gene type direction distance location
dscamb dscam,LOC103377590 coding downstream 95402 23574700 ~ 23693377 (-)
LOC120553253 NA coding downstream 336361 23449151 ~ 23452418 (-)
brwd1 NA coding downstream 341948 23409820 ~ 23446831 (-)
LOC120554161 mipep coding downstream 379701 23377094 ~ 23409078 (-)
sacs sacs coding downstream 447687 23315058 ~ 23341092 (-)
ssr3 ssr3,LOC106581450 coding upstream 167778 23960754 ~ 23964467 (-)
veph1 veph1,LOC106613251 coding upstream 398495 24191471 ~ 24281835 (-)
LOC120551456 LOC102079500,LOC107380520,LOC101465397 coding upstream 534490 24327466 ~ 24331196 (-)
serpini1 serpini1 coding upstream 543081 24336057 ~ 24355496 (-)
si si,LOC107380514 coding upstream 1032047 24825023 ~ 24921452 (-)
G19126 NA non-coding downstream 1092 23785238 ~ 23787687 (-)
G19045 NA non-coding downstream 223537 23565003 ~ 23565242 (-)
G19033 NA non-coding downstream 317055 23464963 ~ 23471724 (-)
G19018 NA non-coding downstream 437355 23347437 ~ 23351424 (-)
G18963 rps25 non-coding downstream 494277 23291741 ~ 23294502 (-)
G19137 gmps,LOC102797084 non-coding upstream 24589 23817565 ~ 23818438 (-)
G19158 NA non-coding upstream 191095 23984071 ~ 23984458 (-)
G19189 NA non-coding upstream 233242 24026218 ~ 24026684 (-)
G19191 NA non-coding upstream 235651 24028627 ~ 24031253 (-)
G19224 NA non-coding upstream 372102 24165078 ~ 24165298 (-)
atm atm,LOC102794456 other downstream 29953 23729488 ~ 23758826 (-)
LOC120574680 NA other downstream 327735 23453547 ~ 23461044 (-)
G18948 LOC103474743 other downstream 536359 23246603 ~ 23252420 (-)
G18885 gramd1b other downstream 640264 23139213 ~ 23148515 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other downstream 1781604 21983302 ~ 22007175 (-)
slc33a1 slc33a1 other upstream 9539 23802515 ~ 23809452 (-)
G19140 gmps,LOC102797084 other upstream 30845 23823821 ~ 23827954 (-)
G19270 ptx3 other upstream 455055 24248031 ~ 24252913 (-)
trip12 trip12 other upstream 2248319 26041295 ~ 26089702 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other upstream 2514088 26307064 ~ 26334719 (-)

Expression


Co-expression Network