rbm7 (rbm7,LOC104959492)


Basic Information

Item Value
gene id rbm7
gene name rbm7,LOC104959492
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22875065 ~ 22882453 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790989.1
GAAGCAGAAATGTAACGGCATTTCACTTTACGACAGGCCTTCCGGTTATATTGGGTAGAGCGTTTTTTTACGCTAGACGTTAGCTAGCATTTAAATCGATTGAGAGTGCTAGTATCTGCGCAAATAAAATGGGAATAGAGGAGGAAACGGACCGGACGCTCTTCATAAGAAATTTGGATCCAAGAGTGACGGAGGAGCTTTTGTTTGAACTGTTTTTACAGGCAGGACCTCTCATCAAAACTAAAATTCCAAAAGACGCCGATGGGAAACAGAAAACGTTTGGTTTTGCCGTTTATAAACATGAAGTGTCCGTGCCATATGCCATGTCGCTACTCAACGGGACATCGCTGCATGGGAGAACTATTCATGTGCAGTTTAGATCAGGTAGCAGTCATAGCAGCAGTCCAGGGAATTCACAGAATACAAGTCCTGCAAATACCCCAAATCCGCATGGCCAAAGGACCCCAATCCAGTTCAGCTCTCCACCATATAGTCCTCCGCCCCAAATGCAGAGGTCCTATTCATCTCCCGATAATCTGCAGAAGCATGTCATGATGAACAACATGATGTGGCAGCTCAACATGCAGCAGCTTGAGCAGATAAATGGCGGCTTTTCCAAGCCTCTGCAGAGGCAGCCGTCTGCAGGTGGAAATTCTGGCGGAAGTGGCTCAAGGCAACATGATAACGCCCACTATCGGCATCCGTCCCAGATGAACAGCGGTGGCAGGAGTCAGCGCTACGCAGATGTGCCAGCTCCCGGTCGTCATCAGCAACACAGCCACAGTCAGGACAACTATCACCATCAGAACAACAGGAGTGGCAACCGTCACCATGAGAGCAGAGGTGGCAACAGACATGACGATAAGGGTAGCAACCGTGGCTACCAAGATAATAGATGGCGACGGTACTGAGACACGTAAAGGATTTCTGTAAGGACTTCAGCTCTTCAAAAAATGTGTGGACagcttacttaaaaaaaaaaagaaaagaaattatgTTGAGAAATTCATATGTATGTACTCAGGTTGTTTGTACATGATCCTACCAGTTTGAAGATTCGATAACTTATGCCTTAGAGCcatttttgtttacttttaaGGCGTTTTTAAATTTGTACACTTCATTCATGTGAGCTTTTCCTCACAGATGTTGCAAATATTTTGAGCTGTATTGATGAGAGCAAGGGGAAAAAACAGACATGACGAAGTCATTTTGGAAGacgaaaaaaaacatgtatttaacaaacaaaaaaaagatttaggatattggcaagtttttttttgttatgcaaAAAGTATTTAAATGGTGCTTCAAAAAATTCTTCAGGTACTTTgcaaaaaagaacaattttCAGCTAAAGATTCCACCAGCACTACTTTTACGGCAATAGGGCACCATCCTTTTTTAATGTTAGATCTGTTGACCttgctctttaaaaaaagaaaaaaaagaaaatgggctttgttttatttttttattctgagtCTGTAATACAAACTGTTTTAAAATGgaacattttcattattataaagCTCCTTTCATTTGA

Function

symbol description
rbm7 Predicted to enable single-stranded RNA binding activity. Acts upstream of or within axonogenesis and cerebellar Purkinje cell layer structural organization. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to several human genes including RBM7 (RNA binding motif protein 7).

NR:

description
RNA-binding protein 7-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13188 RBM7; RNA-binding protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790989.1 True 1546 mRNA 0.41 5 22875065 22882453

Neighbor

gene id symbol gene type direction distance location
barx2 barx2 coding downstream 3475 22860951 ~ 22871590 (-)
LOC120551448 NA coding downstream 76053 22789044 ~ 22799012 (-)
smtla NA coding downstream 522483 22347311 ~ 22352582 (-)
fli1 fli1,LOC106612965,LOC103145351,LOC106905187 coding downstream 641286 22200134 ~ 22233779 (-)
kcnj5 kcnj5 coding downstream 695404 22151337 ~ 22179661 (-)
LOC120546095 NA coding upstream 276843 23159296 ~ 23162078 (-)
lbhl LOC102301737,LOC102196385,LOC100690809,LOC103154600,LOC108238121,LOC106945137 coding upstream 279749 23162202 ~ 23169207 (-)
cfap45 NA coding upstream 396149 23278602 ~ 23283802 (-)
trappc4 trappc4 coding upstream 406943 23289396 ~ 23291463 (-)
sacs sacs coding upstream 432605 23315058 ~ 23341092 (-)
G18841 NA non-coding downstream 59085 22815781 ~ 22815980 (-)
LOC120572359 NA non-coding downstream 79426 22794426 ~ 22795639 (-)
G18837 NA non-coding downstream 95288 22777736 ~ 22779777 (-)
LOC120548681 NA non-coding downstream 238655 22635577 ~ 22636410 (-)
G18810 NA non-coding downstream 442103 22432553 ~ 22432962 (-)
G18868 NA non-coding upstream 162296 23044749 ~ 23120934 (-)
G18883 NA non-coding upstream 255197 23137650 ~ 23138259 (-)
G18896 NA non-coding upstream 273488 23155941 ~ 23156504 (-)
G18905 NA non-coding upstream 293011 23175464 ~ 23175714 (-)
G18911 polr2i,rpb9 non-coding upstream 296183 23178636 ~ 23180583 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other downstream 867890 21983302 ~ 22007175 (-)
gdpd5b gdpd5,LOC103357216 other downstream 1164702 21664076 ~ 21710363 (-)
LOC120572205 NA other downstream 1259819 21610814 ~ 21615246 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 1613142 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 1777864 21094177 ~ 21097201 (-)
G18885 gramd1b other upstream 256760 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 364150 23246603 ~ 23252420 (-)
LOC120574680 NA other upstream 571094 23453547 ~ 23461044 (-)
atm atm,LOC102794456 other upstream 847035 23729488 ~ 23758826 (-)
slc33a1 slc33a1 other upstream 920062 23802515 ~ 23809452 (-)

Expression


Co-expression Network