tyr (tyr)



Basic Information


Item Value
gene id tyr
gene name tyr
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 26966344 ~ 26972566 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039791205.1
gagagagagagagagttgtggcTGGGTTTAGGAGAGAGGTGGAAGGAGGTTTGGTGGAGGGTTAGATGGTAGTATACAGGGGTAGcaagtttaaaaaatgtgcaAGCTGCAAATAAGTAAGAAAAGTAAGTTAGTTCTTTTTAGATCTCTTTAAGTCTAGAAGCCCATCTCTAGATCAAATTTGGTTGAGTGTGCAATCCTGTATTTCTCTGCTTGTAGCCTACTAACCAGAAGTAACTTTCCGTCAGTGAATCTACttctctgtgctgctgctgagtCTAACCTTGTCAGCTGCAGTCTGTAAAGGCATCAGGTTCTGTTGTGTCCATTTTTTCAGCAGGAGTTTACATTCCCATTGACTGGAACTGCTCTGACTTTTCACCATGAGGAGCTTGTATGTATCCGTAGTTCTGCTGCAGCTCATTGGGACTTGTTTATGCCAATTTCCTCGCCCATGTGCCAATTCAGAGGGACTACGGACCAAGGAGTGTTGCCCAGTGTGGGATGGTGACGGCTCAGCCTGCGGTGCCCTGTCAGGCCGTGGTTTTTGCACTGAGGTGGAGGTCTCAGAAGAGCCCCATGGGCCCCAGTACCCACACAGTGGGATTGATGACAGAGAGCGCTGGCCTTTAGCTTTCTTCAACAGGACGTGTCGTTGTGCTGGAAACTATGGAGGTTTTAACTGTGGCGAATGCAGGTTTGGTTACTGGGGTTCAAACTGTGCTGAGTACAGGGAGTCAGTGCGCAGGAACATCCTGACCATGTCACTTGCTGAGCAACAGAAGTTTATCTCTTATCTCAACCTGGCGAAGAACACCATCAGTCGTGACTATATGATCTCCACAGCAACAAGAGCAGAGATGGGTGAAAATGGTGAGAACCCCATGTTCTCTGACATCAACACCTATGACCTGTTTGTCTGGATGCACTACTATGTGTCCCGGGACGCCTTCTTGGGTGGGCCAGGGAATGTATGGACAGACATCGACTTTGCCCATGAATCTGCAGCATTTCTGCCCTGGCACCGAGTCTACCTGCTTCACTGGGAGAATGAGATAAGGAAGCTGACGGGAGATTTTAACTTCACCATCCCATACTGGGACTGGAGGGATGCCCAGTCCTGTGAGGTGTGCACCGATGCTCTGATGGGCGGACGCAGTCCCCTCAATCCTAACCTCATCAGCCCTGCTTCAGTCTTCTCCTCATGGAAGgtgatcTGTACCCAGCCAGAGGAGTACAACAGCCGAGAGGCATTGTGTAACGGCACCGGGGAGGGACCACTGTTACGCAACCCCGGCAACCATGATCCCAACCGCACACCGAGACTCCCCACAACAGCTGATGTAGACTTCACTGTGGGCCTTCCCCAGTACGAGACGGGACCCATGGACCGATTCACCAATATGAGCTTTAGAAACGTCATAGAGGGTTTCGCCAGTCCAACGTCAGGTATGGCAGTGCCAGGCCAGAGCACAATGCACAACGCCTTGCATGTCTTCATGAATGGCTCCATGTCCTCAGTGCAGGGCTCAGCCAACGACCCCATATTCCTGCTGCACCACGCTTTCATCGACAGCATCTTTGAGCGCTGGCTCAGAACCCACCAGCCTCTCCAGACCAACTACCCACGTGCCAATGCCCCCATTGGCCACAATGATGGACACTACATGGTGCCCTTCCTGCCTCTCTACAGAAACGGAGACTACTTCCTGACTGATAAGGTTCTAGGATTTGAGTATGCCTACCTGTTGGACCCTGGCCAGAGGTTTGTTCAGGAGTTCCTGACGCCCTACCTCCAGCAGGCCCAGGAGATCTGGCTGTGGCTCCTGGGAGCCGGGATCCTCGGGGCGCTGATCGCTGCAGTCATCGCCGCGCTGCTTATTGTTGGAAGAAGGAAGTGGAGGCGTaaccagaggaggaagagggcgCTAAGCTACGAAGAGAGACAGCCATTACTGCACAGCAGCTCAGAGGAAGGTTCATCTTCATATCAGACTACTATGTAGCACACACTGATActgaacaaacacacaatatgaATGAACTATTAGGGACACTCAGTATTTTCATGAAGCAAATGAACAAGATGAATCCTGGTACAAgatttcatttttattgatttcccataataaatctattttaattttaaaatggtaTCCAGCAGAtagttgtgttgtctttgcatTTGAGATATTTACTGCTGAGACTTTGGCACCTCAATACAATGGAGCTGTAGTGTATATTTTATTGTGGTGGTAATAGCGTTGAAAAATGTCTTTACAGAAACATTATcacgtttaaaaaaaggatttcaATTATTTTGAATTAACTTGATTTGCAGagttttcaaatgttttaaatggtttttgatcacgttttttgtttttaggcaacaaaaacaacaaaatttcTCCTCTGTGTATTTGGTGGTGAAAGAAGACACAGTGGTAGATATCTCAGTCAAAACAAGTTAAAGCTACTTATCACAAGAAGTGAAGGGGAATTCTTTTTGGGGATTCATAGGCAAACTGACCCTTTcagttttgaaaaagaaaaatgaaaaagtaaagATTTATACAGTACACTACAGTATTTTGTGCCAGGTGAAAGCACTCACCTTGAAGTATTTACTGTCTATGAACTACTCAGCAGTCAATGACAGCAAAGGTGATGTGGCATTGTATGGTACTCTATTTAACTGTGATTCTTCGCTTACAAGACACATACCGTATGTAAATACTGTACGTTTATTTACAGAAGGGAGTCAAATAAATTGATTTGACTATTGCTCAAGGAAAAGGTTAGCAGGAAAGGAATTCTTTTAGATCATTTCATCAAGTCAGGCCAGGTCTGCTGTACTGTAGCTGTAGTGATGGCTCAGGATGTAAAAATCACATTATTTGCCCCATCATACTGAATAAATCAGTGTCAGAACAAAGTCTTCACTTCAAAACtacctctttctcttcattagTTAAATTCATTATAGTAACTGAGAACTAAACTGCTTTTCTAGATGTTATTTGAACATCAAGAAAAAGGGTCTGTTAAAACCTACAGAGTATGTACCCCTCTGTGGGGAATTTGTATAGGTCAGAATGGCCAAGTAAGCCCATTCAcatgtttttctcattttaaacaGTTAACATATTCTGTAAGTGTCTTTGAGAAGCAAACTGTTCTACAGAAGTGAAATCACtgaccaaatctccaaaacACTGTCTTGTGTGTTAGCGCTGGTGCTGAAGGACCACAGTGGTGCTATTGTGATCTTTCACAAGTAAAGAAAATATAGGTGGTATCATGATAACAAAGATGAATCATGAGTTTGTACATGCTGCATTAAAATCAGatccaattttta

Function


symbol description
tyr Enables catechol oxidase activity. Acts upstream of or within several processes, including dopamine biosynthetic process from tyrosine; iridophore differentiation; and melanosome organization. Predicted to be located in melanosome membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; male organism; melanoblast; neural crest; and presumptive retinal pigmented epithelium. Used to study color blindness and oculocutaneous albinism. Human ortholog(s) of this gene implicated in melanoma (multiple); ocular albinism; oculocutaneous albinism (multiple); retinoschisis; and vitiligo. Orthologous to human TYR (tyrosinase).

NR:

description
tyrosinase precursor

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00505 TYR; tyrosinase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039791205.1 True 3364 mRNA 0.45 5 26966344 26972566

Neighbor


gene id symbol gene type direction distance location
naalad2 folh1b coding downstream 27908 26919635 ~ 26938436 (-)
lrrc51 lrrc51,LOC100706293,LOC102797274,LOC102204925,LOC102290838,LOC104968276 coding downstream 89211 26873250 ~ 26877133 (-)
sfrp2l LOC104968278,LOC103371952,LOC103378548 coding downstream 96785 26864536 ~ 26869559 (-)
tomt tomt,LOC104968284,LOC102290535,LOC100705770,LOC103372127,LOC106927839 coding downstream 102336 26861807 ~ 26864008 (-)
folr LOC102204051,LOC104968280,LOC102291363 coding downstream 110108 26852477 ~ 26856236 (-)
fzd4 fzd4 coding upstream 187877 27160443 ~ 27170378 (-)
LOC120553392 NA coding upstream 274667 27247233 ~ 27256996 (-)
pdgfd pdgfd coding upstream 435195 27407761 ~ 27480066 (-)
msantd4 msantd4 coding upstream 752868 27725434 ~ 27731504 (-)
gucy1a2 gucy1a2,LOC102775648 coding upstream 799402 27771968 ~ 27820113 (-)
G19811 NA non-coding downstream 58344 26905173 ~ 26908000 (-)
G19788 NA non-coding downstream 105037 26859783 ~ 26861307 (-)
G19700 NA non-coding downstream 406675 26487858 ~ 26559669 (-)
G19665 NA non-coding downstream 553770 26311617 ~ 26412574 (-)
G19832 NA non-coding upstream 41082 27013648 ~ 27021216 (-)
G19851 NA non-coding upstream 149205 27121771 ~ 27122407 (-)
G19874 NA non-coding upstream 245176 27217742 ~ 27218190 (-)
G19876 NA non-coding upstream 254685 27227251 ~ 27227489 (-)
G19913 NA non-coding upstream 432827 27405393 ~ 27406546 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 496448 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 520409 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 631625 26307064 ~ 26334719 (-)
trip12 trip12 other downstream 876642 26041295 ~ 26089702 (-)
G19270 ptx3 other downstream 2713431 24248031 ~ 24252913 (-)
G19840 NA other upstream 116040 27088606 ~ 27089064 (-)
cwf19l2 cwf19l2 other upstream 852039 27824605 ~ 27847548 (-)
G20417 scarf1 other upstream 2474604 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 2994863 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 3115169 30087735 ~ 30091711 (-)

Expression



Co-expression Network