jam3a (jam3)


Basic Information

Item Value
gene id jam3a
gene name jam3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 35431917 ~ 35443279 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791215.1
CTTGTAGCTATGGAAACTCGTCGCTGGCAACATCCACCAGTCTGTTCTGCTCCATCCTCATACCTAACCTCTCAGAggtgctgagtgtgtgtgctccTGTAACCGATATATGAGACGCTGCAAGATGGCGATTCCACAACTCATCGCTTGTTTTGTTCTGTACACCAGCTTAGGTCACATCCCATCATCACTTGGGGTAATCCTCCGAACCACGGACAAGGTTGTGTGGGCAAATGAATTTGAGCCCATCGAGCTGACCTGTTTAATAGAGTCCATCTCAACAAACAACCCGAGGATTGAGTGGAAAAAGATTAAGAACGGTGTCCCCAGTTATGTGTACTTTCAAAACAGGATAGCAGGGGACCTGGAGCAGAGAGCTCAGCTCAGAGAGCCAGCCAACATCCTGATCCTTAACACCACTCGGGCCGACACGGCAGAGTACCGCTGCGAGGTGGCCGCCATCGACGATCAAAGGGACTTTGATGAGATACTTATTAGCCTCGCAGTAAGAGtgaAACCTGTTGTACCACGCTGCCGTGTACCAGATGCGGTCACCGTTGGAACATCAACCGAGCTGCGATGTCTGGAGAACGAAGGCTTCCCTGCTTCTCAGTACCGCTGGTACCACAACAACGAGGAGCTTCCTCAGGAGCCCAAAAACAGCCCAAAGTCCGCCAACTCTTCCTACATCATCAACCCTGACACTGGAGGCCTGAAATTCCGAAGAGTGAGGAAAGAGGACGCGGGGGACTACTACTGCCAGGCGAGGAATGATGCTGGATATGCACAGTGTCCCTCACAAATGATGGAAGTCTATGACGTCGACTACCTCGGGATTTTCCTCAAGGCGTTAGGTGCAGTGACTGTTTTCGTCTGTTTGACTGCCTCCATTTGTCATTCCTTTAAACGTGGATGCTTCCACAAAAAAGGTCACAATGAAAATAAcTACAATTGGCCAGCACAGAATGATGGTGTTGTATATGGCGATGCAGATGAGGGCCATTTTCGCCACAAGTCTTCATTCATCATTTGACAGCCGAGACGGAGGACACAATGGAACCACgacaaaagcaaaaaacaaaaggtTAACTTGCTACAATGATGGTCCACATGGTAAAGTTTAAGGTGTAACATGGCACATTATTCTCTGATGCACATCAAACTCAAATAAACCAACTTGCCAAAGTAATTTTAATATCATTTTGTGGTActgtttcatgttttttataaagtggtagcattttttattttcttctctgtTAGTATTAATTCccattttaaaccttttttttttaaactctttatttggtttatttgaACTCATTTTCcactatcttttttttattatacagtaAAACCATTTCAAAGCTGTGGAATTTGATATTCGGCCCACAGCATCGTAAAAGATGCTGGAAGCTACGCTCCTTCACAGTTTTTTGGGCAAATCCTCTTTTATAATTCTTAAACTTTTTACTGAGTACACTGAAATTGTTTTACAATGCTCCTTTACATTATCTTTGTTCATACGATAAATATGTTCCTAGTTTGGGCACATGGGGAAGAGTTGAAACTTgttttgtatatactgtagttatGCAGGCAATAAGCAGCAAACTGTAAACGGCTGATGAGTTCAGATTCATAAGGCACAATGTATCAGCCTCTCTTATATTCACAAATGATAACAAGTATGTACGAGTACAGAGTAAACCGTCAGTTTGAATACTATATATCCCACTATGCTGCAAAGTATATATGTACTATAAAGGTGGCGAAGTATGATTTCTAGAGTGCTGTTTCTGTGTATAAGTGACCTTCTGTGCTTTACTAATTATGTTATGAGTATTGGACATATTGTCCAGTTTGACTCAGTATTTAATGTACATAAATACATCATTTTTGACCTTTTAATTGTCATACTTTGCACTCCATACCTTATTGTTAATACTGCAATAAAACTGTTGGAAATAAATTTACAGTATTTACTGGTCAGTGTTCTGCAGTGTTTAGCCAGTCACTTCAAACATTAGTGTCATTGATTTGTGTAACAACTCAGGAACTGTTGTAAAATGTCCACTGTTCATTTGATATTATTGCTATATGTTCATGTTATTTTCTTACTATTAAAACCGTTTGAACTGTAAATGTT
>XM_039791222.1
GCTTGTAGCTATGGAAACTCGTCGCTGGCAACATCCACCAGTCTGTTCTGCTCCATCCTCATACCTAACCTCTCAGAggtgctgagtgtgtgtgctccTGTAACCGATATATGAGACGCTGCAAGATGGCGATTCCACAACTCATCGCTTGTTTTGTTCTGTACACCAGCTTAGGTCACATCCCATCATCACTTGGGGTAATCCTCCGAACCACGGACAAGGTTGTGTGGGCAAATGAATTTGAGCGGGACCTGGAGCAGAGAGCTCAGCTCAGAGAGCCAGCCAACATCCTGATCCTTAACACCACTCGGGCCGACACGGCAGAGTACCGCTGCGAGGTGGCCGCCATCGACGATCAAAGGGACTTTGATGAGATACTTATTAGCCTCGCAGTAAGAGtgaAACCTGTTGTACCACGCTGCCGTGTACCAGATGCGGTCACCGTTGGAACATCAACCGAGCTGCGATGTCTGGAGAACGAAGGCTTCCCTGCTTCTCAGTACCGCTGGTACCACAACAACGAGGAGCTTCCTCAGGAGCCCAAAAACAGCCCAAAGTCCGCCAACTCTTCCTACATCATCAACCCTGACACTGGAGGCCTGAAATTCCGAAGAGTGAGGAAAGAGGACGCGGGGGACTACTACTGCCAGGCGAGGAATGATGCTGGATATGCACAGTGTCCCTCACAAATGATGGAAGTCTATGACGTCGACTACCTCGGGATTTTCCTCAAGGCGTTAGGTGCAGTGACTGTTTTCGTCTGTTTGACTGCCTCCATTTGTCATTCCTTTAAACGTGGATGCTTCCACAAAAAAGGTCACAATGAAAATAAcTACAATTGGCCAGCACAGAATGATGGTGTTGTATATGGCGATGCAGATGAGGGCCATTTTCGCCACAAGTCTTCATTCATCATTTGACAGCCGAGACGGAGGACACAATGGAACCACgacaaaagcaaaaaacaaaaggtTAACTTGCTACAATGATGGTCCACATGGTAAAGTTTAAGGTGTAACATGGCACATTATTCTCTGATGCACATCAAACTCAAATAAACCAACTTGCCAAAGTAATTTTAATATCATTTTGTGGTActgtttcatgttttttataaagtggtagcattttttattttcttctctgtTAGTATTAATTCccattttaaaccttttttttttaaactctttatttggtttatttgaACTCATTTTCcactatcttttttttattatacagtaAAACCATTTCAAAGCTGTGGAATTTGATATTCGGCCCACAGCATCGTAAAAGATGCTGGAAGCTACGCTCCTTCACAGTTTTTTGGGCAAATCCTCTTTTATAATTCTTAAACTTTTTACTGAGTACACTGAAATTGTTTTACAATGCTCCTTTACATTATCTTTGTTCATACGATAAATATGTTCCTAGTTTGGGCACATGGGGAAGAGTTGAAACTTgttttgtatatactgtagttatGCAGGCAATAAGCAGCAAACTGTAAACGGCTGATGAGTTCAGATTCATAAGGCACAATGTATCAGCCTCTCTTATATTCACAAATGATAACAAGTATGTACGAGTACAGAGTAAACCGTCAGTTTGAATACTATATATCCCACTATGCTGCAAAGTATATATGTACTATAAAGGTGGCGAAGTATGATTTCTAGAGTGCTGTTTCTGTGTATAAGTGACCTTCTGTGCTTTACTAATTATGTTATGAGTATTGGACATATTGTCCAGTTTGACTCAGTATTTAATGTACATAAATACATCATTTTTGACCTTTTAATTGTCATACTTTGCACTCCATACCTTATTGTTAATACTGCAATAAAACTGTTGGAAATAAATTTACAGTATTTACTGGTCAGTGTTCTGCAGTGTTTAGCCAGTCACTTCAAACATTAGTGTCATTGATTTGTGTAACAACTCAGGAACTGTTGTAAAATGTCCACTGTTCATTTGATATTATTGCTATATGTTCATGTTATTTTCTTACTATTAAAACCGTTTGAACTGTAAATGTT

Function

symbol description
jam3 Enables cell-cell adhesion mediator activity and integrin binding activity. Involved in several processes, including apical protein localization; hematopoietic stem cell migration to bone marrow; and negative regulation of integrin activation. Acts upstream of or within positive regulation of cellular extravasation and positive regulation of membrane permeability. Located in several cellular components, including cell-cell contact zone; desmosome; and microvillus. Is integral component of plasma membrane. Part of filamentous actin and protein complex involved in cell adhesion. Colocalizes with bicellular tight junction. Biomarker of systemic scleroderma.

NR:

description
junctional adhesion molecule C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791215.1 True 2149 mRNA 0.41 9 35431917 35443278
XM_039791222.1 False 2036 mRNA 0.41 8 35431917 35443279

Neighbor

gene id symbol gene type direction distance location
vps26b vps26b coding downstream 977 35424402 ~ 35430940 (-)
acad8 acad8 coding downstream 12095 35413930 ~ 35419822 (-)
lim2.3 LOC100696479,LOC102233234,LOC101068011,LOC107083386,LOC104944607,LOC105023215 coding downstream 174298 35255377 ~ 35257619 (-)
LOC120544225 NA coding downstream 203845 35225215 ~ 35228072 (-)
LOC120548790 LOC103364414 coding downstream 270104 35155188 ~ 35161813 (-)
cadm1b cadm1,LOC103139681,LOC103474260 coding upstream 147974 35591253 ~ 35763452 (-)
dixdc1a LOC102793002,LOC103356482,LOC100698087,LOC102209574,LOC102311703,LOC101463951 coding upstream 504611 35947890 ~ 35957719 (-)
socs9 LOC103356485,LOC100693056,LOC102211799 coding upstream 827148 36270427 ~ 36274233 (-)
LOC120574060 samd4b coding upstream 831046 36274325 ~ 36289802 (-)
paf1 paf1 coding upstream 851051 36294330 ~ 36301552 (-)
G21854 NA non-coding downstream 10196 35421281 ~ 35421721 (-)
G21805 LOC107597532,LOC100125490,LOC103474213,LOC103139657 non-coding downstream 191609 35236075 ~ 35240308 (-)
G21779 NA non-coding downstream 415637 35016047 ~ 35016280 (-)
G21716 NA non-coding downstream 522196 34909365 ~ 34909721 (-)
G21685 NA non-coding downstream 645681 34785923 ~ 34786236 (-)
G21885 NA non-coding upstream 139202 35582481 ~ 35582706 (-)
G21941 NA non-coding upstream 392710 35835989 ~ 35837435 (-)
G21953 NA non-coding upstream 422496 35865775 ~ 35872049 (-)
G21983 NA non-coding upstream 524249 35967528 ~ 35969033 (-)
G21996 NA non-coding upstream 822444 36265723 ~ 36265968 (-)
zgc:77784 LOC103362442 other downstream 95685 35265295 ~ 35336232 (-)
dyrk1ab dyrk1a other downstream 335666 35047178 ~ 35096251 (-)
LOC120570300 NA other downstream 867372 34555835 ~ 34564545 (-)
G21674 NA other downstream 949884 34481458 ~ 34482033 (-)
LOC120548089 gpr149,LOC102798740 other downstream 1327097 34093140 ~ 34104820 (-)
lrfn1 lrfn1 other upstream 533463 35976742 ~ 36264039 (-)
taok1a LOC103356490,LOC104958432 other upstream 866638 36309917 ~ 36330409 (-)
dph1 dph1,LOC102789142 other upstream 1017400 36460679 ~ 36550114 (-)
kiaa0753 kiaa0753 other upstream 1668917 37112196 ~ 37135841 (-)
G22245 dynll2a,LOC107554284 other upstream 1821294 37264573 ~ 37269320 (-)

Expression


Co-expression Network