scg2a


Basic Information

Item Value
gene id scg2a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 18304115 ~ 18307527 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791587.1
TGGTTCCTCTAATAGCATGAGGAGCTGTCCGCGGTGCTGAAACCAGACTCACACTGCGAGACAGAGATGCTCAGTTCACTCACGACCCTCGATAGAAACTAATTTCAAAGGCGTCACCATGCCGTCACTCCCAAAGACCTCCACCACAGGCAAACCTTTCTTCATCTGTTTTGCCAACCTCCTCTTAATCCTCCTTTTCCTCAGTTCCTCTGGTGTTCACAGTGCTtctctcagagaacacagactGCGAGGAAGTGAATCAGACACCCAGGGAGGAGATGTCCACCAGGCTCCTGATGCCGACATGCTCAAAGCTTTGGAGTACATCGAGAGCCTCCGTCAAAGAACTGGCACGGACTCCCAGCAGCACGCCCCTCTCGCTACAGGGTACGATACCAGCCACATGGATGATGCTGAGAAGCTGCGTGCCATGCTGAGACTGGCTTCTAACCCTATGCAGAGcaaagatgaggaggaggaagaggagtcgAAGGAGGAGGGAAGGGAGGACAAAAGTGAAGAGCTGCTCCAGGCTGTTCTCAGCACCCTCCAGCAGACGGAAAAAGCCTCCAAGCCAGCTTCACTTCGCCCCAGCGTCGAAGGAGGGGGCATAAAGGACGGCATGTATCCCAGGGTGCAGCAGAAGCAACTCAGCATCAAGCCTCACAAGAAGCTGCCGCTAATGTTTGAGGACGAGGAAGAGGGTGAgggggatgaggaagaggaagaggagaggtcAGATCTGGACCATGAGAGCCCCTTCAAACGCACCAACGAGAACGTGGAGGAGAAGTACACGCCTCAGAACCTGGCAACTCTGCAGTCTGTGTTTGACGAACTGGACAAGCTGACAAGTGTGAAGACCATGCATAAACGCCAAGATGAGGAGGATGACATGGAGGAGAGTGATGATgaggaagaagatgatgatATGTTTAATGTGAGGAATGTAGCATACAATGACGTAGGCGGGGATCTCGCAGACTGGGGTCCGCTACAAGAACAGgaagagggagaagaggaggaggaggtggaggaggagagggacaacAAACATGAGGCTGACCGAGGGCTTGATTATGTTGACGACAATGACGAAGAAGCTGATGAGGATGATGAAGTGGAAGATGATGAAAGCTACCCAGTCAAGAGAGCAAAAGATCCAGATGACGTCGCTAACCTGGTAGACTATTACCTCCTAAAAGTGCTGGAGAAAACAGAAGAAGAGCAGAAACGACAgttagaggagaaaaagagggcAGAGAGGAGAGTGGCTCAGACAGAGTACAGAGATAACATAGATCCACGGGCCATCTACCAGCTCATTCAGATCTCCCAAAAATACCAGATCCCACCTGAAGACCTTGTGGACATGCTCAAAACCGGAGAACCGACGAATCAAGACAAGTTACGAAAGAGTAACGAATTAGCCAAAGCAGAAAACAAGCTCTCTCAGATATCCTCaaagaagaaacacaaaaatCCTGAAGCTAAATTCTACAACAGACGCTTTCCTGATAGACAAAAGACACCAGAAGAGATTAGGACAGAAGAGATACTAAACATCCTGGGGTTAGAGGGCGAAGAGGATGGAGCTCCTGTCAGGAAGCAGAAGCAGTACAAAAGCTCGCAGTTACGACTTCACACTCAGCCTCCTGGACATTCGAGGGAATCCGCTCCCACGCAACGGCGCCTTCCCAGTTTATTAAAAAACGACTATGATGACACCGTGGACGAGGATGAACTGGCAGCATATTTAGCAGCTCAGATGCTGGCACAGTATCCAAAGCCTGTGTACAGAAACAACAAGGCGAGCCAAAAGTGGGACGAAGTTGGACAGAGCATGACGGGCTCTTTTGAACAGGCGATACAGGCTTATTTTGATCAAATAGACTCAGATAAAAACCCAAATGAAAAGAGACAGACTGAGGATGATGAGCGGGGCGGTGAAACACAAATGCAGGGCTTTGATAATGAGGCTGTGATGAAATTGCTGAGCTACCTGAACCCAGAAACTGAAGCAAGTGCTACTAATGCCAAACCTGCCCCAGGAATATAAAGAAGgctatagatagatatacatatatatatatatacatatat

Function

NR:

description
PREDICTED: secretogranin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791587.1 True 2103 mRNA 0.49 2 18304115 18307527

Neighbor

gene id symbol gene type direction distance location
dhrs12la LOC102209276,LOC100699243,LOC101076961 coding downstream 5355 18288287 ~ 18298760 (-)
psmd2 psmd2,LOC102798368 coding downstream 67599 18224512 ~ 18236516 (-)
alp3 LOC103377813,LOC108248287 coding downstream 133170 18157115 ~ 18170945 (-)
LOC120573061 LOC100706961,LOC103359448 coding downstream 179224 18119297 ~ 18124891 (-)
zgc:153039 LOC103359447,LOC103377809 coding downstream 560491 17665818 ~ 17743624 (-)
kcne4 kcne4 coding upstream 27669 18335196 ~ 18337515 (-)
acsl3a acsl3 coding upstream 33085 18340612 ~ 18370457 (-)
sgpp2 sgpp2,LOC103365078 coding upstream 91274 18398801 ~ 18414141 (-)
pxylp1 pxylp1 coding upstream 468646 18776173 ~ 18797083 (-)
LOC120547915 clstn2 coding upstream 585279 18892806 ~ 19141693 (-)
G17782 NA non-coding downstream 455096 17844434 ~ 17849019 (-)
G17745 NA non-coding downstream 547683 17756168 ~ 17756432 (-)
G17739 NA non-coding downstream 610847 17692996 ~ 17693268 (-)
G17716 NA non-coding downstream 831169 17472679 ~ 17472946 (-)
G17714 NA non-coding downstream 836624 17465020 ~ 17467491 (-)
G17917 farsb,LOC102796683,LOC102210931 non-coding upstream 75632 18383159 ~ 18383539 (-)
G17936 NA non-coding upstream 285448 18592975 ~ 18593673 (-)
G17964 NA non-coding upstream 441671 18749198 ~ 18749401 (-)
G17986 NA non-coding upstream 847435 19154962 ~ 19155251 (-)
G18002 NA non-coding upstream 923392 19230919 ~ 19234457 (-)
LOC120545639 eif4g1 other downstream 81222 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 152147 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 413454 17799999 ~ 17890661 (-)
xaf1 LOC107094331 other downstream 825212 17472947 ~ 17478903 (-)
G17597 NA other downstream 1373121 16848161 ~ 16930994 (-)
fbxo46 fbxo46,LOC102786997 other upstream 1393700 19701227 ~ 19717307 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other upstream 1493224 19800751 ~ 19810130 (-)
LOC120547993 NA other upstream 1829545 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 2786650 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 2929661 21237188 ~ 21261923 (-)

Expression


Co-expression Network