LOC120553334


Basic Information

Item Value
gene id LOC120553334
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11535785 ~ 11540819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791660.1
GCTGTGTCGATCCAAAACAAAGTGAGGGTATGgccggttaaaaaaaaaaaaaagaagaaggattCATCTTTAAGGATTTGGTAATGAATGGGTAGAAAAGTAGCTCCATTCAGCTCCCTTCTCTTCTTTCTGTGCCCACCCTGCCCCCCAGCACACTATTACAATGAAGGACCCCATCCCCCCCAACAACACCcacattaacacacattaacacacacactcccagccCTGCCCCCTGAAGAACACAGGCAGGGGGGTGTGTATGGGTGGGTTTCCCCAACTATTTAAGCAGATTCCAACAGATGGTCGAGGAACTTTCCTCCGAGGGTCACGTTGCTCTTCTTCAACGGACCTGACTACTTCTTCATTTCTCTCCCCTTCCCTCCCCACAAAACTCTTTCAACTCGTAGGACAAGCAGTTTCTCTTCCGCTTCTGAAGGACCAAACTGAAATCCCCGAGGTTTCCCCAGGCCTTAAACCTTTTTCTCTGCAGTCTCAGATCCCCTAAAGACTAGACTGTCTTCCTTCACTTTGGACCCAGACACGTTTTGTCCTCCCCAGCGTTCCTCCACTGTGGGATCAGGCATCCAGCTCCTTCAACTCAGCGAGGACGGTGGAGCGAACCATGCCCTCCGACTTTCTAACGCCTTTCCTGGAACTGGATGAGGAGTTCTTCAAGAATTTCCGCGGCCTGGAGGCGACAGATGGCTCGCCTACCGGCTCACAGCCTCAACGGCAGCAGCACAGCCAACGAGTCCTGGGCTTCCAGCGTCGCCATTCTCTGTGCCCCGTGACCCTCCCCAACTCCAAGTTCAACAGCggcgccagcagcagcagcagcagcagcagctctgatGTGATTGACTCAGTCGGCTGGGGGCTCAACGCGGCCTCCAGCCAGCAGTGGAGCGGGGAAAGTCAGCTTCCTCTCTCCTCACTCAGCCACATCCCCTTCAGAGTCGACCGCTCTGTCAGCATGATCGAGGGCGGCAGCTTGGGAGCCAGAGAGGAAAAAATGGCTAACTTAGCCCCAAAACTGCTGCTCCCTCCGCCTGGCTTCGGCCTCAGCAAcagctccctctcctccctcgcTTCCCCGTCTGCCTCCAGACCCCAGGCTCCCTCGCCTCACATCTCCACCCGGTACAAGACCGAACTCTGCCGCACCTACGAGGAAAGCGGCACCTGCAAGTACGGCGCCAAGTGCCAGTTCGCCCACGGCATGGACGAGCTCAGAGGCCTGTGCAGGCACCCCAAGTACAAGACGGAGCCGTGCCGCACTTTCCACACGATAGGCTTCTGCCCGTACGGCGCCCGCTGCCACTTCATCCACAACGCCGACGAGATCCTGGACGGCAACGCTGGCGCGCCTCCgcagaaacagaagctgaggCCTCCTCCGCTGCGTCACAGCTTCAGCTTCGCGGGCTTCTCCTCCTTGCCGCAGACTTTCCAAGCGCTCGAGGAGTTGCagccttcctccctcctcttcgcACGGGcctcctctgtctcccctcCCCCGTCCTCCACAGGGAGCCCCGAGCTCCTGTCCCCTCTCTTCCCCGAGCCAGGGGCGCTGAAGCATTGTCCCTACCCCTTCTCTGGCATCAGCGACCTGGGAGGCGACAGTGGCGATTCGGCGCCACGATTCTATGCTGTGACCGAGTCGGTCAGCGCCAGGTGTCCCACCAAAAATCCAAACCTCCCTTACCGCCTCCCCCAGCAGCTGCCGGTGCCCCTGAGCAGCCTCCCCGGCCTTCAGCGCTGCTCCTCGGCCGACTCGCTCTCCGAGGAGGGCTACACCTCCTCCTGCTCCCTCAGCTCTTCCTCCAGCGGCACGGAGTCGCCAAGCTTCGAGGGCCGACGCCTGCCCATCTTTAGCCGGCTGTCTGTCACAGACGAGTAGGGGGAGGGTTTTACTGTCAGGCTGAATTTAATCAGGGACCTCTAATTGTTTAAACTCTATGTGACGAGAATGTGATAGttgggttgttgtttttttgcctaGTCCGAAAACCAAAAAGCAGCTTTGACCTATTTTTTTTCTATGCACAATATAGGGTCTAAATAAAGCAGAAACTTCATTATCACAAGATTTTGAAAACAGTTAAAGAGTTAAAATACAAGTCACAATGGAGTCAAACATTAGGGTTTCAGTCCCTCCCTAGATCCAGCTAGGTAAACGTACCTAACTTTGTGCATATTGCATTTCTCATCCAAGCAGTTGTAGCGCTGCTCAGTGTTCGTCCAATTTTAGCTGacttcttttgtgtttttttttttattttttttataaggtTGTCCTTTTACGCCATTGTTACTGCTGTATACTGTTGTATACTCATTTTTTAAAAGAGAATACTTGTAGGGTACTTCACTTAGCTCGGCATTTGCTCAAAACGCTATCCCTACTCAGTGGGAGCTTCTGTGTGAGAATCCCTGGTACCCAGATTGAAGAAGGATTTGAAGATGTATGAATGGTGTGCTTTCCGCTTTTCCACAGatcttatttgttatttttactcCTTACAAACAGTTTATAGTGATGCCAACCTGCAGCTCTTCTCCAGTCACATGAGGGCTCTCCAACTGTATGAAACCAACCTCCTGTCCACGAGTAAGAGGGTTAAAGAACTCTATATGCTGttactgattgattgattgattgattgattgattgattgattgattaattgattggaTGTATGGCTGTGGCCACTTGATTGTATATGTCAGCCATTTTAACTGCCTGGCAAGGATTCAGCTAAACTGCCTCAGCAACAAATGGTATGGCAACCCACTGACTCACTAGTTACCAAAGTTGATGTTAGAGTTCCCCTAACCGACTAGTACTGTTAACACCCAGCCTAGCCTTTAACCACGAAAGAAAGTATGCAGTGTTATGATTATTGTTGTTATAGCGTAACACTTTTGTAGacttatttattgtttttttttaattaagttgTTGAGTTTGctttgtgattgtgtttgtgcattttttttataatcctaGAGAAATTATGCTTTACGACTGTATTCATAATGTCCATCTGCTTGGTTTATACTATCCAGTAGCTTTAAGAAGGCTCgcggaggggagaggagaggagaggaaaggaaaggagaggaggagaaactTTTTGGCATTCTATATGTATGTTGCCTTATTGGCTAATAGGCCGGCAGAAATCAAGACTCACTGAGGTTTCACATCAAAAGCAGCTGGATAAGTAAGTCAGCGGTTTCTCTCTTCGAATGGAGACGCCGACTGATGATCTTTAGCATGTCTGCTGTTGGCGTGAGCGTACAGTGAGTCTACTCTCCTCTCCGTCACGCCTCACACACCTGACTGTAATAACCTTTTTCTCCAATTGTTAAGTGCTGTTATCTAAATACGAAGCAAAGCGGTGGTGAAAGAGTGGTTTCCGCCACACATTCGTGGCCTCAGTGTGAGTCAGCAGTTGTAAATAGAAATGTGGATACACAATGATCATCCGTTTGGCAGCGAcataaaaatgtgtcaaaaaatgTTCATCTTAGAAAAGAGAAAAGCTAACAATACATCATACGTGTGTGATTTATCAGGGCTGCTGTATTGCTACGTTGTGGTCATAGTGTGTGGAAACTAccgtttttaaaagaaaacctgTGTGCTATCTTCTTCTCTTGTTGTAGGCAAACGGGGGAAAAGGAGACCTTTCTGTACAGTTGATTTGTATCTATCAGAGTTGCCTGGATGACAATGTGTTTGTAGGTCGACCGCTGTTgcacgctagctagctagctctctgAGCGGCAGGTGAAATCAAGCGAGTTAAAATGAAATCAGGCAagattttttgtattattattgtttgtttttgtcatgaaatCAGAAACTCGACCTGCCCCGAAGAGACGCTCGCTGTTGCTGTAGCTAATTGTTAGCTCGACCTGGCAACAAGCCGTTTCTGTAACTTTTGTTAACTTAAAAgtcttatttattttgtttttcaaagcGAAAACCTATATTGTGGTGTttgatattgtgttttttttgtttttttttcttgtttttttacataatttaagTGCATTTATTGTTTACATTCCACGGGTTATGTTGACGACCTAGCTCTTTATCTTAATATATTTGTcccattttatttcaaaataaaagtctttgaAAAATGAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791660.1 True 4178 mRNA 0.48 2 11535785 11540819

Neighbor

gene id symbol gene type direction distance location
LOC120551226 NA coding upstream 556356 10977205 ~ 10979429 (+)
LOC120551211 NA coding upstream 1071432 10455757 ~ 10464353 (+)
LOC120547173 NA coding upstream 1090296 10434485 ~ 10445489 (+)
LOC120548947 LOC103372137,LOC102304476 coding upstream 1111015 10405189 ~ 10424770 (+)
LOC120550666 LOC105915347 coding upstream 1158974 10359389 ~ 10376811 (+)
rps3 rps3,LOC102795110 coding downstream 13833 11554652 ~ 11562928 (+)
LOC120554434 NA coding downstream 15488 11556307 ~ 11556455 (+)
LOC120554442 NA coding downstream 16633 11557452 ~ 11557600 (+)
LOC120554427 NA coding downstream 19572 11560391 ~ 11560539 (+)
LOC120554420 NA coding downstream 21437 11562256 ~ 11562404 (+)
G16207 NA non-coding upstream 484 11535088 ~ 11535301 (+)
LOC120572352 NA non-coding upstream 49715 11484612 ~ 11486070 (+)
LOC120552116 NA non-coding upstream 93526 11427476 ~ 11442259 (+)
G16192 NA non-coding upstream 116904 11418614 ~ 11418881 (+)
G16190 NA non-coding upstream 189429 11346015 ~ 11346356 (+)
G16229 NA non-coding downstream 148401 11689220 ~ 11771683 (+)
G16235 NA non-coding downstream 193579 11734398 ~ 11752981 (+)
G16237 NA non-coding downstream 213555 11754374 ~ 11812385 (+)
G16250 NA non-coding downstream 278061 11818880 ~ 11819272 (+)
G16261 NA non-coding downstream 315532 11856351 ~ 11890247 (+)
zgc:101731 LOC106580895,LOC100194580,LOC103372138 other upstream 1030447 10388232 ~ 10505338 (+)
G15712 NA other upstream 1532190 10002250 ~ 10003595 (+)
LOC120551195 NA other upstream 1532413 9866710 ~ 10003372 (+)
G15642 NA other upstream 1867306 9645137 ~ 9668479 (+)
LOC120551159 fam13c other upstream 1882954 9631391 ~ 9652831 (+)
G16267 NA other downstream 353685 11894504 ~ 11900873 (+)
G16467 clns1a,LOC102781126 other downstream 855176 12395995 ~ 12409274 (+)
LOC120552034 LOC104947607 other downstream 901311 12442130 ~ 12456583 (+)
LOC120554522 NA other downstream 1089855 12630674 ~ 12630864 (+)
G16590 actn4,LOC102210441 other downstream 1328011 12868830 ~ 12922469 (+)

Expression


Co-expression Network