LOC120553392


Basic Information

Item Value
gene id LOC120553392
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 27247233 ~ 27256996 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791741.1
acacagacacacagcactaTGGCATCACATTGCAACCGCCAATATTTTCTAAACCCAAGGCTTTCCCTCCAGCTGCTGGCTCTGGTTGGGACTTTGACGTGGCACATTCTTGTCACAGaaaGTGCTACTTCAATTCAGCTCAGAGGGGAGGTTGGTGGAAATGTGACCTTTTCCTGCCCCACTGCGAAacaaaaattaagatttttgtacTTTCAGAGGGGTGAGATATTTGTGAATGGCTACTATGAATCAAAAACTGCATTAGAGATAGCAGAGCTGGCATGGAAGAACACCATAATGGATCACGACAAGACAACTATGCACATGTACAATTTGAACGTCTCACATCATGGTGAATATCAGTGCCATTTCCAGTACATTGGCAGTAGTGCAACTCACAAACAAATCATACATCTCAATCTTACAGCCAACTACAGTAAACCTGCTCCCACAGTGCACTGCAGTGATGAAAACCATCGCTTTAGTTGCCTAGTGACATGTGCTTCACATGATGGGTACCCAGTCAACAAGGTGACGTGGAACGTACCAGGGAGTCAGATTTGGACGGTTTTGAACAGCAGTGAAATGAACGATCCAAAAACCATGATGGTCAACAGCTCAAGCACTGCATACTTCAACTGCTCCAATGGAAATACGTCAATCAGCTGCTCTGTGGGCAACGTCAGCTCAGACGTGTTCTCAGTCTGTATACCCATTGGTCCACCACCTGTTCCTCACAGTCCTGTGATTGAAGCCATCTGTGCAGTGGTGGGTATCACTATCACTATGCTGGTATTGCTGCTGTGGTGGAGATGCAAGAAGGGACAGAGAGGAGCGGCAGCAGTAGATTTTAGGCGAGTAAATGGATGTGAGGAGGAGGCAACAGTCCACAATGAAAGCAATGAAGGGAAAGAGGCCTCTTGAGTGCTGAATTGGTGAAGATGCATAAaggacttcttcttcttcttggttCTAGAATCTAGAACTAAAACTATATGTCATTCAAGTGTACATTACATTTGTGACTGACTAGCTATATACAAGCCAGGAACCGCCAGAGTGGTCGGTGACTCATTGGCACTAGTCTGTGAATCAGAATCACTGGGGAATGCTGTCGACATTTCACTGACTTTTAAGTGTTTGAGGAAGTATTCCTTATGACTATCACTTTACGGTTGATGTGCAGTGCATCATTCAACTGAGAGTAGCTTActtctaaaaaagaaaaacaacaacaataaaatagaTAAAGACTTTTCCAATGGCTGTGGTGAGATTGTTGTTGTATACTGGAAAACAGTCTCTGTGTggaggaaaaacaacaaaagcggtgtttgtttgttgttacaCTGACCTCTACGGGCAGAAGCTGAATCTGTTAGACATGCTGCAAGTTTCACTTTtggactgttgttgttgttgcacttTAAAATTCCCCTTGTGCCTTTTCGTAAGTATAGCACAGTCTACAATATtatgttgtgttagtgtttggcTTTGtggaattgttttatttttttatttaatgcacATAATAGAACAGTCAATGTTACTCATGTCATGCCAGTATAGGCCTAcaattcattttgttttgaaagtgtTTGAAATGTACTGTGGTTCCCTAATTTTGTCTAGGGTTTTATTCTCCAATTCGTTTTGTCTATCAGAAATGATCATTGGCAAGGAAAATATGTGTGAATGCagaatatatgtttttttctgcaataGATTCCAGTATTTTATGAGGTAAGGTGCAATATTAAATACAAAGGGAaagggtttttgtttttgctaatTAAATTACCGTTACCCTTAAAACTAATATTTTGGTCTTCTTAgcaattctgacatttttttctcaGGTGACTGTTCTCATGTAAAATATTGTTATTttgctatttatttttatttcatgtttttctttcttaataTTAAATTGTGTGTTGTTTACCCTGTTTACACTTTTTGGGTAATTTAGGCTGTTATTCCTCCTTcctatgaatgaatgaattaccAAACATTTCAAAGGGCTGCTTCCGTTTCCTACATCTGTAAGAATGATGGCTGTTTGCTTACTTTTTCATGTTTATATGGCATTTTACATAACTTCGCAATCCTGTCCTATATCTTATTTTTGTTCTTTGGTACTAAATGTACAATGGATTAAACTTGTAATTATA

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791741.1 True 2180 mRNA 0.39 8 27247233 27256996

Neighbor

gene id symbol gene type direction distance location
fzd4 fzd4 coding downstream 76855 27160443 ~ 27170378 (-)
tyr tyr coding downstream 274667 26966344 ~ 26972566 (-)
naalad2 folh1b coding downstream 308797 26919635 ~ 26938436 (-)
lrrc51 lrrc51,LOC100706293,LOC102797274,LOC102204925,LOC102290838,LOC104968276 coding downstream 370100 26873250 ~ 26877133 (-)
sfrp2l LOC104968278,LOC103371952,LOC103378548 coding downstream 377674 26864536 ~ 26869559 (-)
pdgfd pdgfd coding upstream 150765 27407761 ~ 27480066 (-)
msantd4 msantd4 coding upstream 468438 27725434 ~ 27731504 (-)
gucy1a2 gucy1a2,LOC102775648 coding upstream 514972 27771968 ~ 27820113 (-)
alkbh8 alkbh8 coding upstream 593028 27850024 ~ 27864523 (-)
kbtbd3 kbtbd3 coding upstream 615419 27872415 ~ 27880814 (-)
G19876 NA non-coding downstream 19744 27227251 ~ 27227489 (-)
G19874 NA non-coding downstream 29043 27217742 ~ 27218190 (-)
G19851 NA non-coding downstream 124826 27121771 ~ 27122407 (-)
G19832 NA non-coding downstream 226017 27013648 ~ 27021216 (-)
G19811 NA non-coding downstream 339233 26905173 ~ 26908000 (-)
G19913 NA non-coding upstream 148397 27405393 ~ 27406546 (-)
G19915 NA non-coding upstream 229189 27486185 ~ 27486477 (-)
G19916 NA non-coding upstream 253797 27510793 ~ 27539558 (-)
G19963 NA non-coding upstream 486219 27743215 ~ 27743465 (-)
G19967 NA non-coding upstream 488289 27745285 ~ 27745574 (-)
G19840 NA other downstream 158169 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 777337 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 801298 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 912514 26307064 ~ 26334719 (-)
trip12 trip12 other downstream 1157531 26041295 ~ 26089702 (-)
cwf19l2 cwf19l2 other upstream 567609 27824605 ~ 27847548 (-)
G20417 scarf1 other upstream 2190174 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 2710433 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 2830739 30087735 ~ 30091711 (-)
cbl cbl other upstream 2897897 30154893 ~ 30198071 (-)

Expression


Co-expression Network