dhx40 (dhx40)


Basic Information

Item Value
gene id dhx40
gene name dhx40
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21600529 ~ 21607740 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792047.1
TGAATGGGTTAGTTTGCGGAAGTTATTGGGCGAGCATGTTTTATGGTTTTATACATAGACATATATTATACTTTCTATTGTTGGAAACGACAGAGATAAACATGAAAGAACTCGCTAATTGTAAAGTTTAATCCCgtctgtgggtgggtgtgggtaAAAACACCGACTTAACCGTGTTCCGCATGATTAACGTCGGTATTTTTTTCGTCTGTTCAGCTCCTCACACTGTTATCTGCTGGtaaagctaacgttacttaGTTATGTCCAAATCAACGAGATTGGATTCAAAAGAAAATGAGTCCGAACACCTGCCGATCTATCAGCACAAAGCCAAACTGATTCAGGCTGTCAAAGACAGCACTTTCCTGGTTGTCACCGGCGAGACTGGCAGCGGGAAAACCACACAACTTCCAAAGTACCTGCATAAAGCAGGTCTTTGTAAAGATGGCAAAATTGGCATCACCCAGCCCCGCCGGGTGGCTGCCATCACAGTGGCTCAGAGGGTAGCCCAGGAGATGCAGTGCAATCTGGGTAGAGAGGTTGGCTACCAAGTACGCTTTGATGACTGCACATCACCGAGCACCGTGGTGAAGTATATGACAGACGGCTGTTTGCTCAGAGAGATCCTGGCAGATCCTGTACTTTCTCAGTACAGTGTTGTAGTCTTGGATGAAGTCCACGAACGCAGCCTTAACACAGATATTCTCCTGGGTTTACTGAAGAAAATGTTCTCCAACCCTGCTAAGACCCCCAAGGGCCGATCAATCCCTTTGAAGGTGGTGGTGATGTCCGCCACCTTGGAAACGGACAAACTTTCAGCTTTTCTTGGCGGCTGTCCCATCTTTTCTATTCCAGGGAGGGCTTTTCCTGTCACCTGCACATTTGGTTTTGCTGTAGGACCTAAAGACATAGAGAGCACTGGTTATGCAAAAGAGGTTGTCAAAGTGGCCCTTGATGTGCATACCAGTGAAATGGCTGGGGATATTCTTGTGTTTTTGACAGGTCAGTCAGAGATTGAGCGGGCCTGTGACTTGTTATATGAAAAAGCTGAGTCTATTGATTACCGCTACGATGTGCAGGACCAAACAGTGGAGGGCCTTCTTATTTTGCCTCTTTATGGATCCATGCCCACTGATCAACAGAGGCAGATCTTTCAGCCTCCACCTTCAGGAATAAGAAAGTGTGTAGTGGCCACAAACATTGCAGCAACATCTCTCACCATCAATGGCATAAAGTACATCATAGACAGCGGGTTTGTGAAACAACTCAACCACAACTCAAGGGTGGGCATGGATATCTTGGAGGTGGTGCCTATTTCAAAgaGTGAGGCTCAGCAGAGAGCAGGCCGAGCTGGAAGAACCTCAGCCGGGAAGTGCTTTCGAATCTACACCAAGGAATTCTGGGAGAAGAGCATGCCTGAATATACAGTTCCGGAAATCCAGAGGACAAGTCTGACTGCAGTGATACTCACACTCAAGTGCCTGGGCGTTCATGATGTCATTAGgttccCTTATCTAGACTGTCCAGAGGAACGGTTTATTCTCGAGGCATTAAAACAGCTCTACCAATTTGATGCCATCGATAGGAGAGGTAGAGTGACCCAGCTGGGGGAGCTGATGGTGGAGTTCCCCCTGCACCCAGGCCTTACCAGGGCCGTGCTCAAAGCCGCCTCGCTCGGCTGTGAGGACCTACTGCTCCCTGTGGCCGCCATGCTGTCTGTAGAGAACATTTTCATCAGGCCAGGCCACCCTGAGAAGCAGAAAGAGGCAGATAAAAAGCACAGAGCGCTGGCTGCCAAGAGCGGCAGTATGAATGACTTTGCCACTCTCCTCAGTGTGTTTCAGTCATGTAAATCCAGTGACAGACCCTCAGCCTGGTGTAAGGATAATTGGATCCACTGGAGGGCGCTGAAGTCAGCCTTTAGTGTGGAGACTCAGTTGCGAGAGATCCTCCTCCGCCTGCAACAGAAGAAAGATTTCCCTGTGGACACATTTGATGGCAATAAGAGCGAACTCTTCAGACGATGCCTGTGTACAGGATACTTCACCAACGTTGCCAGAAGGTCCGTTGGAAAGGTGTTTTGCACAATGGATGGCCATGGATCCATGGTTCACTTTCATCCATCATCATCGCTGTTTGACCAGGAGGATGAGCTGAACTGGGTCATTTTCCACGATGTGCTGGTGACCTCACGGGTGTATATTAGGACCGTGTGTCCTATTCGATACGAGTGGGTGAAAGACTTATTACCTAAACTCCATGAGGTGGATGTCTATGAGCTGAGCGGTGTGGCGAGAGAAGAAGTGACTGATGAGGAGATGATAAAATGGGAGACCAGGGAAGCTGCCAAAAGACAACCAGAGGTTTCTACTGAGGATGTCATGAAGAAGCTGGAGAAGCGAAACAATGATGTCACTGTCAGCGATGCTCGTGCTCGCTACCTGCAAAGAAAgcaacaaagacaacaaaaataaaGCTCTTTGACAGAAA

Function

symbol description
dhx40 Predicted to enable RNA binding activity. Orthologous to human DHX40 (DEAH-box helicase 40).

NR:

description
probable ATP-dependent RNA helicase DHX40

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18711 DHX40, DDX40; ATP-dependent RNA helicase DHX40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792047.1 True 2490 mRNA 0.48 17 21600529 21607740

Neighbor

gene id symbol gene type direction distance location
akt2 akt2,LOC100707971 coding downstream 530 21580379 ~ 21599999 (-)
LOC120553405 cntd2 coding downstream 22668 21573329 ~ 21577861 (-)
si:ch211-132b12.7 NA coding downstream 27849 21565551 ~ 21572680 (-)
LOC120573840 LOC101479958 coding downstream 71768 21516913 ~ 21528761 (-)
LOC120551403 LOC102783338 coding downstream 85825 21507054 ~ 21514704 (-)
LOC120572601 NA coding upstream 304 21608044 ~ 21610638 (-)
gucy2f LOC103357218,LOC100708779 coding upstream 113249 21720989 ~ 21732143 (-)
mmp13b mmp13 coding upstream 146653 21754393 ~ 21758179 (-)
siae NA coding upstream 179800 21787540 ~ 21794944 (-)
srpra srpra coding upstream 436441 22044181 ~ 22053600 (-)
G18591 NA non-coding downstream 17126 21527455 ~ 21583403 (-)
LOC120572042 NA non-coding downstream 67774 21529997 ~ 21532755 (-)
G18492 NA non-coding downstream 189330 21410908 ~ 21411199 (-)
G18429 NA non-coding downstream 484535 21113372 ~ 21115994 (-)
LOC120575525 NA non-coding downstream 513654 21085093 ~ 21086875 (-)
G18626 NA non-coding upstream 25240 21632980 ~ 21695722 (-)
G18631 samsn1,LOC102311369,LOC107374247 non-coding upstream 43963 21651703 ~ 21652866 (-)
G18669 NA non-coding upstream 212249 21819989 ~ 21878764 (-)
G18758 NA non-coding upstream 540299 22148039 ~ 22148297 (-)
G18770 NA non-coding upstream 580523 22188263 ~ 22188687 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 338606 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 503328 21094177 ~ 21097201 (-)
LOC120547993 NA other downstream 1458991 20137072 ~ 20141538 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 1790399 19800751 ~ 19810130 (-)
fbxo46 fbxo46,LOC102786997 other downstream 1883222 19701227 ~ 19717307 (-)
LOC120572205 NA other upstream 3074 21610814 ~ 21615246 (-)
gdpd5b gdpd5,LOC103357216 other upstream 56336 21664076 ~ 21710363 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other upstream 375562 21983302 ~ 22007175 (-)
G18885 gramd1b other upstream 1531473 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 1638863 23246603 ~ 23252420 (-)

Expression


Co-expression Network