abcg1 (abcg1,LOC103475277,LOC103152983,LOC102205798)


Basic Information

Item Value
gene id abcg1
gene name abcg1,LOC103475277,LOC103152983,LOC102205798
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6420513 ~ 6448328 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792148.1
GTGCGGTGTCTCAGTGATGGGATCAGTGTGAGGGAGCAGAGTGCTGCTGTCTCTGGGCCTGACATGGCCTGTCTGATGGCCGCCTGGTCCGTCCACAACCCCAGCGTCACCAACTCCATCATCATGAACACCAACGGGCCCCCAGACCTCATGTTGGACCCGCGGGCGGTGTGCGTCTGTATGGACGACGTGGCGAGCCAGCGGCCGGCGGGCGGCCAGCAGACGCCGCTGCTGCACGGGTACTTAAAGAAGGTGGACAACAACCAGACGGAGGCCCAGAGGTTCTCCTCGCTGCCGCGCAGACCGGCCGTCAACATCGAGTTCAGGGACATCTCGTACTCCGTCAGGGAGGGGCCCTGGTGGAGGAAGAAAGGTTACAAAACTCTGCTGAAAGGGATCTCTGGGAAATTCACCAGCGGGGAGCTGGTGGCCATCATGGGGCCCTCAGGGGCCGGGAAGTCCACCCTCATGAATATCCTGGCCGGGTACAGAGAGACGGGGATGAAGGGGGAGATCCTGATCAACAGTCAGCCCAGAGACCTGCGCTCCTTTAGGAAGGTTTCCTGTTACATCATGCAGGACGACATGCTGCTGCCTCACCTCACCATACAGGAAGCCATGATGGTTTCAGCCAACCTGAAGCTGCAGGAGAAGGCGGAGGCTCGCAGAGAGATGgtgcgggAGATCCTGATGGCTCTGGGTTTGCTGGACTGTGCTAAGACCAGGACATCTCACCTGTCGGGTGGTCAGAGGAAGAGGCTGGCCATCGCTCTAGAGCTCGTCAATAATCCTCCGGTCATGTTCTTTGATGAACCCACTAGCGGCTTGGACAGCTCGTCCTGTTTCCAGGTGGTCTCTCTGCTGAAAGCTCTGGCTCAGGGAGGACGGACCGTCATCTGCACCATCCACCAACCCAGCGCCAAACTGTTTGAACTCTTTGAcaagctgtacGTGCTGAGTCAGGGTCAGTGCATCTACAGAGGGAAAGTCTGCAGTCTGGTTCCCTACCTGAGAGAGCTCGGACTCAATTGCCCCACCTACCACAACCCGGCCGACTTTGTGATGGAGGTGGCGTCTGGAGAACACGGAGATCAAATGGTGCGACTGGTGCGAGCCGTCCAGGACAGGAAGTGTGAGAAGACTGAAGTGAACGGAGACACTCGCCTCCACCCGCTCATGTGGCACCGCACTGAGGAGGAGAGTTCGGCGTCTGAAGGTTGTCACAGTTTCTCGGCCAGCTGCATGACGCAGTTCTCCATCCTGTTCAGGAGAACGTTCCTCAGCATCCTCAGAGACTCTGTGCTGACTCACCTGAGGATCTCCTCTCACATCGGGATCGGCGTCCTGATTGGTCTGTTGTACCTGGGCATCGGGAACGAGGCCAAGAAGGTTCTCAGTAACTCGGGCTTCCTCTTCTTTTCCATGTTGTTCCTCATGTTCGCCGCTCTGATGCCCACAGTGCTAACATTTCCTCTGGAGATGGGAGTTTTTCTGAGGGAACACCTGAACTACTGGTACAGTCTGAAGGCGTATTATCTCGCCAAAACTATGGCGGATGTCCCCTTCCAGGTAGTGTTCCCGCTGGTGTACTGCAGTATTGTGTACTGGATGACGGCTCAGCCTCCGGACGCCAGAcgcttcttcctcttcctgtctCTGGGCGTTCTGACCTCTCTGGTGGCTCAGAGTCTGGGCCTGCTGATCGGAGCCGCCTCCACCTCTCTGCAGGTGGCGACGTTTGTGGGTCCGGTCACAGCGATCCCTGTGCTGTTGTTCTCCGGGTTCTTTGTCAGCTTCGACACCATCCCCTGGTACCTTCAGTGGATGTCTTACATCTCCTACGTCAGGTACGGCTTCGAGGGCGTCATCCTGTCGATCTACAGTTTGGACCGAGAGGATCTTCACTGCGATGATCACGACACCTGCCACTTCCAGAAGTCGGAGGCTATCCTGAAGGAGCTGGACATGCTGGACGCCAAACTCTACCTGGACTTTATCGTCCTAgccatcttcttcttctccctgaGGCTCATCGCTTACTTTGTCCTCCGGTATAAAATCAGCGCTGAGAGGTAG

Function

symbol description
abcg1 Predicted to enable ABC-type sterol transporter activity. Acts upstream of or within regulation of cholesterol efflux and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG1 (ATP binding cassette subfamily G member 1).

NR:

description
PREDICTED: ATP-binding cassette sub-family G member 1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05679 ABCG1; ATP-binding cassette, subfamily G (WHITE), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792148.1 True 2076 mRNA 0.57 15 6420513 6448328

Neighbor

gene id symbol gene type direction distance location
LOC120549609 NA coding upstream 67512 6350475 ~ 6353001 (+)
LOC120545249 NA coding upstream 96103 6323484 ~ 6324410 (+)
LOC120545240 NA coding upstream 129535 6290058 ~ 6290978 (+)
LOC120545220 NA coding upstream 246003 6169219 ~ 6174510 (+)
LOC120545214 NA coding upstream 256137 6161446 ~ 6164376 (+)
LOC120545383 NA coding downstream 62417 6510745 ~ 6520784 (+)
LOC120572075 NA coding downstream 63849 6512177 ~ 6516516 (+)
LOC120552698 NA coding downstream 76880 6525208 ~ 6526163 (+)
LOC120572775 NA coding downstream 86141 6534469 ~ 6535401 (+)
LOC120552719 NA coding downstream 93035 6541363 ~ 6542380 (+)
G14863 lipt2 non-coding upstream 32113 6381723 ~ 6388400 (+)
G14841 NA non-coding upstream 159291 6260871 ~ 6261222 (+)
G14807 NA non-coding upstream 230004 6164445 ~ 6190509 (+)
G14792 NA non-coding upstream 417599 6002208 ~ 6002914 (+)
G14788 NA non-coding upstream 499827 5919899 ~ 5920686 (+)
G14901 NA non-coding downstream 9796 6458124 ~ 6458818 (+)
G14902 NA non-coding downstream 10614 6458942 ~ 6463821 (+)
G14904 NA non-coding downstream 17180 6465508 ~ 6466255 (+)
G14907 NA non-coding downstream 25182 6473510 ~ 6473769 (+)
G14908 NA non-coding downstream 28346 6476674 ~ 6477146 (+)
spcs2 spcs2 other upstream 3004 6407985 ~ 6417509 (+)
rnf169 NA other upstream 16088 6393062 ~ 6404425 (+)
G14344 NA other upstream 891894 5510757 ~ 5528619 (+)
G14187 LOC107380983,LOC108250349,LOC108250351,LOC103477369,LOC103473932,LOC107835021,LOC106936810,LOC102294474,LOC102776571,LOC108229490,LOC103360213,LOC107834023,LOC103368570,LOC102214284,LOC102800009,LOC101480046,LOC101470105,LOC102792843 other upstream 1003378 4801340 ~ 5417135 (+)
G14209 LOC102792843 other upstream 1893136 4500173 ~ 4527377 (+)
G15019 NA other downstream 524517 6972845 ~ 6989396 (+)
G15173 LOC102077075 other downstream 949773 7398101 ~ 7399141 (+)
G15234 NA other downstream 1043037 7491365 ~ 7492057 (+)
rffl rffl other downstream 1358481 7806809 ~ 7853429 (+)
LOC120543808 NA other downstream 1378282 7826610 ~ 7828087 (+)

Expression


Co-expression Network