pdgfd (pdgfd)


Basic Information

Item Value
gene id pdgfd
gene name pdgfd
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 27407761 ~ 27480066 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792196.1
GCAAAGTTTGACGCGCCGACTTTCATAGCACAGACGCGTCTAATAGAAACCAGTAAAACTATGCGGGGTATTTCTCAGTGACTGAACAGAATTTATTTACTCCGCGGTGATAAGAAGTTCGGCGCCTGTAAGCTCATGTCTGACCGTGAACGGAGCTATATTACCCTCCACCTGCACTTAATTGTTTCGGAGTTTTGCTCTCGGTGTCTGTGGGCGAGTAACTTTCAGGCGAGCACAAATACTTGGATTTCGGGGCACTTTGGCACAAGACGGGACATCGTGAGCGTCAGGCAGTCAAATAGTGGCTCTCATTTTGCGGGTAGAGAAAAGAGATTAAGAAAGCGTAAAGTTGTTGAATGGAAAGTTAGTTTTGAATTTCTTGGTCGCGGGGTATCTTAgcctaaatcacattttatttcagccaGAAGGTGAAGAGGACATTAGTCATTTAAAGCTTGTACGAGTTTGTTATCAACATGAGTGGAGGATTAGTTTTCCAGATGTGGACGGTTTTATTGTTGGGGACAATAACCGGGGTCGGGAGGGCTCAGGTCTCCAACGTCAAAGTGCTGAGGGGCAACATCAGGAGAGACGACTTGTACCGCAAAGAAGAAAACATCACAGTAACGTCAGTGGGTGGAGCCATCCCCAGTCCACGCTACCCCAACGCTTATCCCCGCAATCTGCTGTTGTCATGGAAACTGGTATCGCCACCAGGGAGCCACATACACCTGGAGTTTGACGGACACTTCGgcctggaggaggctgataatGGAGTGTGCAGGTATGACTTTGTTGAAGTggaggaccaatcagagaccAGCACTATAATTTGGGGTCGCTGGTGTGGGCAGAAGGCACCGCCTAGTCTTAACTCCAAAACCAACACGCTCAGAGTCACCTTCAAGTCTGATGATTACTTTGTTGCAAAGCCGGGATTCAAAGTCTACTACTCACTGCTGTTTGACTCTCCTCTGCCTGCATCCATCACCAACTGGGAGGTTGTCACTATTCCAATGTTGGACATTGGTGCAGAGCACATGCCAAAGGCAGTCACAGAGGTTCCTTTCTCATTGGAGGATTTGGACCGGACCATAGCTGCCTTTGACACTGTGGAGCAGCTGTTCAGATCCCTGAGCCCAGACACCTGGAGACAGGACCTGGACAGCATATACACTCAAACACATATACATTATAGATCCAGGGCCTATCATCTGGCAAGCAGACATAATAAAGTTGATCTAAATCGTCTCTTTGACGACGTCAAGCGGTACAGCTGTACGCCTCGCAACTACTCTGTAAACCTGCGCGAGGAGCTGAGGGCCACCAACGCGGTTTTCTTCCCTCGATGTCTGCTGGTCAAACGCTGTGGAGGCAACTGTGGCTGTGGAACTGAGAACTGGAACAGTGGCTGCACCTGTCAGGCCTCCAAAACGACACTCAAACTACACGAGGTGCTGAAGTACGTCCCAGAGGTCACTCTGTATCAGCGCTCTAAGAGGCTGAAGGTGCGCTGGGTCATAGATGAGATCTTCCTCACACACCATGAaaagtgtgagtgtgcgtgtccCTCCCAGCCCCCTCGCTGACACACCCAGACTGGCACATGCATCAGGAACTGTTGGACGAGTTCCTCTTTTATCTATTTTGCAACGGACTTCATATAATTACAGCaacgcagacacacatgcagtaAAGAAGAAGGCAGCATTTTGACTGACAAAAAACTCAGCTCACATCATACACTGTGACATTTGTCCTTGCAAGTAAACCTACCTTTCTCTGTACACAAGTCAaactttttatatttaactttCCAGCAACTTGGAGTCTACATTTTCCCTTTTTCAATCGGAATTTCTTTCCTATAAAAACCAAATTCATAAGATTCTTTGGAACACAAAAACATTACCATGTCACactatgaaaaaacaacaatattataataaactcacatttacattttgatttAAGGAGTTTAACGCATGCCAACTTGATTGAATTCAAATTTTACTCCAACCGCTGTGTAAACAGTTTATTCATATttcatgtgtatatatttgcGTCTTCGTGTATTTTTATTTGCAGGAACTTTAAGCCCTTCTTCAGCCAGAAGCATGCTGagatgtgtgagtgtgagacagaatgagggagggagaggggttGGAGGAAGTGTAAACCAAAATAACACTTTATCTTGATGTGAAATTAGGCTAACCACAACCCTCTAGATCTGAATTGCATACTAACGCACTCAAACACACATTCGCTCTAGGCTTCTGCTCCATCCTTAAAGACAAAAAGAGTAGTTATTATTTATACTAAAATCTTCACTGCTCTATTTATTAGTGAAGCCTTCTTGTTTTTCACACATTCCTGTCTGCATTTATTCACGCTTCCCTTtgtctatccatccatccatatgcTTCCCGCCCCTTTTCTTTCTCACTGattccatctctccctctttctaaAGCACACACTCCCTCACTCCCTTCATCACTCTctaacatgaaaagaaaagtgagATCAGACTGCTGTGCTCTGCCCAGCTTTCTGAGCGTTCCTGGCATTCCAAATGCTAACTGGAATTCTGCTAACACAGATAAAACCGTGATCCTCAGACCCTGAACACAtacgtgtgtgttttttttaggagAGGCGTTTAATAGAAAAGGGACAATCAAGCTGCCTGTTCGTAGATTACCAGCACTTCTGGATGAGAGAGGAGCCACTTTCAAGATACAACATAAAAGATTGCAGCTACTTCAGCGGTTTCAATCAGCATGTTCACATATTCAGCTTGACTGATTTTTTGTCAGACTGCTTTATAACCTCACGAAGATGCTCATGAATATCACAATCTGACCCCATTTTGCAAGTCTGCTGCAGCACCACAGTGAAAAAGAGATCTGTGGGAATTAGTGTAATGTTCTTGGTCTCTGCTGAAAATACAACTGatacctgtgtatgtgtgttttacatGGCTAAGCTAAACCTAGGCTCGTAAAACAAAGGAATACAGCTACAAAACCTAGCTCGTAAAATTAATGGTATTGGTCTCATCTCCCTGCGTGATGCATTTAGCGTGGCAATGAGACCTATGCTTGCCTGGATGAGCGTATACTTTCCTACCTAAGAGGGGTTGTGCTGTGTTAAATGACTCACCCAGCCGCTGTTTCAATTCGTGTTGCGGACCTGGGCCTGCTTGCTTTGGTGACCATCTCATTGGGAACGACATCCGCTCCAgaggtctcatttataaaactatgcgtaggatccttactaaaagtgtgcatacgcccaaaagccaaaaatggctTACGGcaaaaaaaattctgatttataaaaccgtgcatacgcacatctgtaagcaatgttccgtttataaatcacagattacccacccataagtgtgcgtacgtgaatGCACGCAAAGCACCTTATGAATGCTGATAAGTATGTCAATGATGATGACTGgcagagaaaaagcaaaaaaaaacttctcagacacTGGTGAATTgatgcaaattgaattataatttcggcctttTCGTGCACAGTGTAGGTAAATGAGACaacctatattaataataccgtccaaaacggcaggcgttgctggatttaatcttcatggtaacgtggatgccatggagtgaaaaaatacttgaaaatattaagAGTAATAAGAGTAGTAAGTAAAAATTCCCatctactttctgcagtctgacttcagttcaccacctcaccatctgcgtcgccaattctattttgtctccaaaatgtgtgcacgcatgggtcagagtttgcgt
>XM_039792203.1
GCAAAGTTTGACGCGCCGACTTTCATAGCACAGACGCGTCTAATAGAAACCAGTAAAACTATGCGGGGTATTTCTCAGTGACTGAACAGAATTTATTTACTCCGCGGTGATAAGAAGTTCGGCGCCTGTAAGCTCATGTCTGACCGTGAACGGAGCTATATTACCCTCCACCTGCACTTAATTGTTTCGGAGTTTTGCTCTCGGTGTCTGTGGGCGAGTAACTTTCAGGCGAGCACAAATACTTGGATTTCGGGGCACTTTGGCACAAGACGGGACATCGTGAGCGTCAGGCAGTCAAATAGTGGCTCTCATTTTGCGGGTAGAGAAAAGAGATTAAGAAAGCGTAAAGTTGTTGAATGGAAAGTTAGTTTTGAATTTCTTGGTCGCGGGGTATCTTAgcctaaatcacattttatttcagccaGAAGGTGAAGAGGACATTAGTCATTTAAAGCTTGTACGAGTTTGTTATCAACATGAGTGGAGGATTAGTTTTCCAGATGTGGACGGTTTTATTGTTGGGGACAATAACCGGGGTCGGGAGGGCTCAGGTCTCCAACGTCAAAGTGCTGAGGGGCAACATCAGGAGAGACGACTTGTACCGCAAAGAAGAAAACATCACAGTAACGTCAGTGGGTGGAGCCATCCCCAGTCCACGCTACCCCAACGCTTATCCCCGCAATCTGCTGTTGTCATGGAAACTGGTATCGCCACCAGGGAGCCACATACACCTGGAGTTTGACGGACACTTCGgcctggaggaggctgataatGGAGTGTGCAGGTATGACTTTGTTGAAGTggaggaccaatcagagaccAGCACTATAATTTGGGGTCGCTGGTGTGGGCAGAAGGCACCGCCTAGTCTTAACTCCAAAACCAACACGCTCAGAGTCACCTTCAAGTCTGATGATTACTTTGTTGCAAAGCCGGGATTCAAAGTCTACTACTCACTGCTGGACATTGGTGCAGAGCACATGCCAAAGGCAGTCACAGAGGTTCCTTTCTCATTGGAGGATTTGGACCGGACCATAGCTGCCTTTGACACTGTGGAGCAGCTGTTCAGATCCCTGAGCCCAGACACCTGGAGACAGGACCTGGACAGCATATACACTCAAACACATATACATTATAGATCCAGGGCCTATCATCTGGCAAGCAGACATAATAAAGTTGATCTAAATCGTCTCTTTGACGACGTCAAGCGGTACAGCTGTACGCCTCGCAACTACTCTGTAAACCTGCGCGAGGAGCTGAGGGCCACCAACGCGGTTTTCTTCCCTCGATGTCTGCTGGTCAAACGCTGTGGAGGCAACTGTGGCTGTGGAACTGAGAACTGGAACAGTGGCTGCACCTGTCAGGCCTCCAAAACGACACTCAAACTACACGAGGTGCTGAAGTACGTCCCAGAGGTCACTCTGTATCAGCGCTCTAAGAGGCTGAAGGTGCGCTGGGTCATAGATGAGATCTTCCTCACACACCATGAaaagtgtgagtgtgcgtgtccCTCCCAGCCCCCTCGCTGACACACCCAGACTGGCACATGCATCAGGAACTGTTGGACGAGTTCCTCTTTTATCTATTTTGCAACGGACTTCATATAATTACAGCaacgcagacacacatgcagtaAAGAAGAAGGCAGCATTTTGACTGACAAAAAACTCAGCTCACATCATACACTGTGACATTTGTCCTTGCAAGTAAACCTACCTTTCTCTGTACACAAGTCAaactttttatatttaactttCCAGCAACTTGGAGTCTACATTTTCCCTTTTTCAATCGGAATTTCTTTCCTATAAAAACCAAATTCATAAGATTCTTTGGAACACAAAAACATTACCATGTCACactatgaaaaaacaacaatattataataaactcacatttacattttgatttAAGGAGTTTAACGCATGCCAACTTGATTGAATTCAAATTTTACTCCAACCGCTGTGTAAACAGTTTATTCATATttcatgtgtatatatttgcGTCTTCGTGTATTTTTATTTGCAGGAACTTTAAGCCCTTCTTCAGCCAGAAGCATGCTGagatgtgtgagtgtgagacagaatgagggagggagaggggttGGAGGAAGTGTAAACCAAAATAACACTTTATCTTGATGTGAAATTAGGCTAACCACAACCCTCTAGATCTGAATTGCATACTAACGCACTCAAACACACATTCGCTCTAGGCTTCTGCTCCATCCTTAAAGACAAAAAGAGTAGTTATTATTTATACTAAAATCTTCACTGCTCTATTTATTAGTGAAGCCTTCTTGTTTTTCACACATTCCTGTCTGCATTTATTCACGCTTCCCTTtgtctatccatccatccatatgcTTCCCGCCCCTTTTCTTTCTCACTGattccatctctccctctttctaaAGCACACACTCCCTCACTCCCTTCATCACTCTctaacatgaaaagaaaagtgagATCAGACTGCTGTGCTCTGCCCAGCTTTCTGAGCGTTCCTGGCATTCCAAATGCTAACTGGAATTCTGCTAACACAGATAAAACCGTGATCCTCAGACCCTGAACACAtacgtgtgtgttttttttaggagAGGCGTTTAATAGAAAAGGGACAATCAAGCTGCCTGTTCGTAGATTACCAGCACTTCTGGATGAGAGAGGAGCCACTTTCAAGATACAACATAAAAGATTGCAGCTACTTCAGCGGTTTCAATCAGCATGTTCACATATTCAGCTTGACTGATTTTTTGTCAGACTGCTTTATAACCTCACGAAGATGCTCATGAATATCACAATCTGACCCCATTTTGCAAGTCTGCTGCAGCACCACAGTGAAAAAGAGATCTGTGGGAATTAGTGTAATGTTCTTGGTCTCTGCTGAAAATACAACTGatacctgtgtatgtgtgttttacatGGCTAAGCTAAACCTAGGCTCGTAAAACAAAGGAATACAGCTACAAAACCTAGCTCGTAAAATTAATGGTATTGGTCTCATCTCCCTGCGTGATGCATTTAGCGTGGCAATGAGACCTATGCTTGCCTGGATGAGCGTATACTTTCCTACCTAAGAGGGGTTGTGCTGTGTTAAATGACTCACCCAGCCGCTGTTTCAATTCGTGTTGCGGACCTGGGCCTGCTTGCTTTGGTGACCATCTCATTGGGAACGACATCCGCTCCAgaggtctcatttataaaactatgcgtaggatccttactaaaagtgtgcatacgcccaaaagccaaaaatggctTACGGcaaaaaaaattctgatttataaaaccgtgcatacgcacatctgtaagcaatgttccgtttataaatcacagattacccacccataagtgtgcgtacgtgaatGCACGCAAAGCACCTTATGAATGCTGATAAGTATGTCAATGATGATGACTGgcagagaaaaagcaaaaaaaaacttctcagacacTGGTGAATTgatgcaaattgaattataatttcggcctttTCGTGCACAGTGTAGGTAAATGAGACaacctatattaataataccgtccaaaacggcaggcgttgctggatttaatcttcatggtaacgtggatgccatggagtgaaaaaatacttgaaaatattaagAGTAATAAGAGTAGTAAGTAAAAATTCCCatctactttctgcagtctgacttcagttcaccacctcaccatctgcgtcgccaattctattttgtctccaaaatgtgtgcacgcatgggtcagagtttgcgt

Function

symbol description
pdgfd Predicted to enable growth factor activity and platelet-derived growth factor receptor binding activity. Predicted to act upstream of or within platelet-derived growth factor receptor signaling pathway. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in prostatic hypertrophy. Orthologous to human PDGFD (platelet derived growth factor D).

NR:

description
platelet-derived growth factor D-like

GO: NA

KEGG:

id description
K05450 PDGFC_D; platelet derived growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792196.1 True 3812 mRNA 0.44 7 27407761 27480066
XM_039792203.1 False 3752 mRNA 0.44 6 27407761 27480066

Neighbor

gene id symbol gene type direction distance location
LOC120553392 NA coding downstream 150765 27247233 ~ 27256996 (-)
fzd4 fzd4 coding downstream 237383 27160443 ~ 27170378 (-)
tyr tyr coding downstream 435195 26966344 ~ 26972566 (-)
naalad2 folh1b coding downstream 469325 26919635 ~ 26938436 (-)
lrrc51 lrrc51,LOC100706293,LOC102797274,LOC102204925,LOC102290838,LOC104968276 coding downstream 530628 26873250 ~ 26877133 (-)
msantd4 msantd4 coding upstream 245368 27725434 ~ 27731504 (-)
gucy1a2 gucy1a2,LOC102775648 coding upstream 291902 27771968 ~ 27820113 (-)
alkbh8 alkbh8 coding upstream 369958 27850024 ~ 27864523 (-)
kbtbd3 kbtbd3 coding upstream 392349 27872415 ~ 27880814 (-)
p2ry2.1 p2ry2 coding upstream 561383 28041449 ~ 28046085 (-)
G19913 NA non-coding downstream 1215 27405393 ~ 27406546 (-)
G19876 NA non-coding downstream 180272 27227251 ~ 27227489 (-)
G19874 NA non-coding downstream 189571 27217742 ~ 27218190 (-)
G19851 NA non-coding downstream 285354 27121771 ~ 27122407 (-)
G19832 NA non-coding downstream 386545 27013648 ~ 27021216 (-)
G19915 NA non-coding upstream 6119 27486185 ~ 27486477 (-)
G19916 NA non-coding upstream 30727 27510793 ~ 27539558 (-)
G19963 NA non-coding upstream 263149 27743215 ~ 27743465 (-)
G19967 NA non-coding upstream 265219 27745285 ~ 27745574 (-)
G20012 NA non-coding upstream 289435 27769501 ~ 27771897 (-)
G19840 NA other downstream 318697 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 937865 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 961826 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 1073042 26307064 ~ 26334719 (-)
trip12 trip12 other downstream 1318059 26041295 ~ 26089702 (-)
cwf19l2 cwf19l2 other upstream 344539 27824605 ~ 27847548 (-)
G20417 scarf1 other upstream 1967104 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 2487363 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 2607669 30087735 ~ 30091711 (-)
cbl cbl other upstream 2674827 30154893 ~ 30198071 (-)

Expression


Co-expression Network