LOC120553635 (sarm1,LOC102788660)


Basic Information

Item Value
gene id LOC120553635
gene name sarm1,LOC102788660
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29458234 ~ 29464232 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792271.1
CATGATGAGCTCTGACCGGCTGTGATGATGCAGGGACGatagacaggaggaggagggggtgcttttttcctcttcatcacCGGCAGAATCCGGAGCCGGTGGGCGGCGCAGACCCCTGAAGATACAGAGAGCCTGCGGATGCTGACCGAAGGATGCGATAGCTCGGATGCTGATATTGGAGAGTGGTATCATATTTTGTATTTCTGCAGGGAGACGAACCGCCGCGGTGCGTCAGATAAGGAGTGTGAGTCTTCTTTGTCTccaaaacacagacaacaatAGTCTGTTTTCTTGTCTGGAAAAAAAGTGGATTTGCTCTCTACTCTTTCAGTTTGAGGCCCTGTGTGCTGAGACTTTGCCTCTTTAAGGACACTTCAGCAATTCTGTTGCACATTTGTCATCTATTGGTCGGTGGGTTAAAAGAGAAAGCAGCAGCTGTTGACTATGGCAGACATACTGTGACCTGCTCAAGATCTGCTTATGAGTCTTTATGGGGGCTTACTGTCAGGGAGGACATCGACTAGAGAGAGGTGATGTAATTTGGTGAAAGCTGTCACTTTTGATTAACAACTGACAGGCCTTGCTTGGCGCATCTGTAGGCACCAGGCTGGACATCTCTGAGAGGGATAAGAGAGGCCTttgtaaacaaacacatttcaacATCCACTGACGAGTTTCTGCCGGTAGATGCTATTGTCTCTGACTCTCTTCCTGTGGAGGCTCTACCGACAATTCTTCATCATGTTCAGCTCAGACAGGCTTACAGTCCCGGAATATGTAAGCCGgctgcagagagggaggagcGGCTCCGGCTCCGTCTCCGAGCCCAAAGCGGTCTCTCCGGGCGTCAATGCGGACGTCCAGGCGGTTCTGGACACCTCAATCCCCGCCCTGCGCTCCGCCATCAGGAGGCTAAAGTCATCCAAGGAGACCTCTGATTCCGATGAGACCCGCAGTGCCATCGCAGAGCTCTTTCAGCTGGTGGAGGAGGCCTGGGTTTTGCCCACTATAGGCCGTCAGGTGGCCGAAGAGATCTGCAACCGGATCCGGCTGGATGGAGgtctggagctgctgctgcagcttcaACAGACACCTGCCGTGGAGATCACCTATGAGTCTGCAAAACTGCTGGAGCAGATACTGATCTCGGAGAACAGAGATTATGTAGCACGAATGGGTCTGGGGGTCATCCTCAACCTGACTCGACATCAGGAAGACGCACAGCTGGCTCGCAGTGTGTCGGGGATCCTGGAGCACATGTTCAAACACACAGAGGAGACGTCTGTCCACCTCATCTCTAACGGTGCCCTGGATGCCCTCCTCTTCTGGTGCCGGGGTACAGATCCCACTGTGCTACGCCACTGTGCTGTGGCACTAGCAAACTGTGCCATGTACGGAGGCCACCGCTGCCAGCGATGGATGATCGAGAAACAGGCAGCTGAGTGGCTTTTCCCACTGGCTTTTTCTAAAGAGGATGAACTCATTCGCTTCCACGCGTGTCTGGCTGTGACTGTGTTAGCTGCAAACCGAGAAATTGAGAAAGAGGTGGTGAAATCTGGAACCCTGGAGCTGGTGGAGCCATTCATTGCATCTTTGGATCCAGATGACTTTGCCCGCAGTTTATTGGACAGTGCAGACTGCATGCAGGGTAAGACAGCAGCTGATCTTCAGCAACTTTTGCCATTACTGGATGGCACAAGAGTGGAGGGAAAGTGCATTGCAGCCTTTTACCTTTGTGTAGAGACCAGCATCAAGTCTCGTCAGCGCAACACTAAGATATTTCAAGAGATCGGAGCGGTGCAGAGCCTAAAAAGAATGGTCATGTACTCCAGTAATggcacagcctgtgcccttgCCAAGCGGGCTCTGAGCATGATGGGAGAGGAAGTGCCGAAACGTATCCTGTCATGTGTGCCTAACTGGAAAACCTCTGAAGTGCAGACCTGGCTGCAGCAGGTTGGCTTTAGTGCCTATTGTGACCGTTTCCAGgaGCTCCAGGTGGATGGAGACCTCCTGCTGAACATCACGGACCAGGAACTCAGCGCTGATCTGGGCATGACCGCAGGCCTCACTCGCAAGAGGTTTTTGAGAGACTTGCGTGTGTTGAAGACTTATGCCAACTACTCCACATGTGACCCAAACAATATGGCTGACTGGTTAGTTGAGGTGGACCCTCGTTTCCGTCAGTACACCTATGGCCTTGTCCAGTCAGGAGTGGATAGCAACAATGTCCAGAGCTTGACTGATCTGCAGCTCCAGAATGACTGCCACATAGACAACGGAGTCCACAGAGCCAAGATACTCTCTGCCAACCACAGGGCCTTAAAACCGTGCCACACAGATGCCCAGCCTGCAGGGCCCGATGTGTTCATCAGCTACCGTCGGACTACCGGCTCCCAGTTGGCCAGCCTTCTGAAGGTGCACCTGCAGGTTCGAGGATACAGCGTCTTCATAGATGTGGAGAAGCTGGAGGCCGGTAAATTCCAGGACAAACTTATCCAGAGCGTACAGCGGGCGCGTAACTTCATCCTGGTCCTGTCTGCCAATGCGCTCGACAAGTGCATGGGTGACACTGACATGAAGGATTGGGTGCATAAGGAGATAGTCACAGCCTTGGCTGGTAAGAAGAACATAATTCCTGTCACAGATAACTTTATGTGGCCCGACCCCATGTCTATGCCGGAGGACATGAGAGCAATTCTTAACTTCAATGGCATCAAATGGTCCCATGAATATCAGGAAGCCACGATTGAGAAGATCCTACGCTTTCTGAAAGGACACCAAGACCAAATCGACTGCCCAGACGCCTCCAAAGggcagaaaaagaaataaactgaCATAAACAGTTTGATCTCAGCTATGATAACTTTAAATTATGCCAATTCCACATGGCCTATGGTGAACAGGCCGGCAGCTTTCCCTGCTCTGCCCAAATGCATGTCAAGTGAATTTGATTATGTTTAGCTTACATGCTCACACGAAGACCTAATAGAAATTGACCTAATATATTGCaaacaataaattaaaatgaaaagggGATTTTAGATCGTATATAATAAACTGTAAGCCTTTAATGATAGTACCCTCATACTGCTGTATATTTGTAATCAGGTACAGTATACGCCTTCTGTCTCTCAGGAAAATAACTGTGATAGATCAGCTGTTATTGGCACCCCAGCAAAATCATCAATAGCAATTTCTGAAGCATCCACTAATCACAAAAATGATATGCAATCATCTTTTCTgctcatatactgtacataggaCCAAAGAAGATCTCTGATCTTActgacatttgtgttttttatgtttggGTTGTGATGGAAAAGAAATCTGTCCTAGCAGATGCATTAATTGTTCATGATGAGAGTATCCACAGTGGGCATAATCGAAGCTGGAGGCATGTCATATTGTACAGAAATAAACGCTACATGCTGTATGACTGCACCCCTAATTTAACCAAATACAGGTCAAAGGAGTATACAAGCAACTAAAAACACCCACGTAGTATCAAACCTTTCCTTCCTTCTGTGTAAT

Function

symbol description
sarm1 Enables NAD+ nucleosidase activity. Involved in NAD catabolic process. Predicted to be located in axon; mitochondrion; and synapse. Predicted to be active in dendrite. Orthologous to human SARM1 (sterile alpha and TIR motif containing 1).

NR:

description
PREDICTED: sterile alpha and TIR motif-containing protein 1

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792271.1 True 3537 mRNA 0.49 8 29458234 29464232

Neighbor

gene id symbol gene type direction distance location
foxn1 NA coding downstream 51051 29386104 ~ 29407183 (-)
cryba1a cryba1,LOC108246057,LOC105936483,LOC103145583,LOC104943196 coding downstream 102893 29352325 ~ 29355341 (-)
cpda cpd coding downstream 110811 29329368 ~ 29347423 (-)
gosr1 gosr1 coding downstream 131719 29303285 ~ 29326515 (-)
LOC120551002 LOC103361980 coding downstream 318972 29084966 ~ 29139262 (-)
LOC120545693 scarf1 coding upstream 4861 29469093 ~ 29477554 (-)
LOC120545703 rilp,LOC104966718 coding upstream 13661 29477893 ~ 29490644 (-)
prpf8 prpf8 coding upstream 26932 29491164 ~ 29508379 (-)
trnaw-cca NA coding upstream 48417 29512649 ~ 29512720 (-)
aifm4 LOC104966742 coding upstream 54908 29519140 ~ 29526322 (-)
G20407 NA non-coding downstream 24228 29433055 ~ 29434006 (-)
G20350 unc119 non-coding downstream 75943 29362929 ~ 29382291 (-)
G20348 LOC104922853,LOC102220912,LOC103367115 non-coding downstream 97307 29359442 ~ 29360927 (-)
LOC120573394 NA non-coding downstream 159812 29297340 ~ 29298422 (-)
G20335 NA non-coding downstream 212012 29244487 ~ 29246222 (-)
G20425 tlcd2,LOC107103571,LOC104967200 non-coding upstream 68334 29532566 ~ 29553100 (-)
G20431 NA non-coding upstream 89082 29553314 ~ 29553568 (-)
G20458 NA non-coding upstream 129172 29593404 ~ 29598747 (-)
G20463 NA non-coding upstream 140607 29604839 ~ 29606154 (-)
G20480 pafah1b1,LOC106581047 non-coding upstream 188911 29653143 ~ 29656085 (-)
G20417 scarf1 other downstream 9579 29447170 ~ 29448655 (-)
cwf19l2 cwf19l2 other downstream 1610686 27824605 ~ 27847548 (-)
G19840 NA other downstream 2369170 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 2988338 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 3012299 26434281 ~ 26445935 (-)
im:7138535 NA other upstream 503197 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 623503 30087735 ~ 30091711 (-)
cbl cbl other upstream 690661 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 1104641 30568873 ~ 30618434 (-)
spa17 spa17,LOC103353395,LOC106919647,LOC107380342,LOC100697535 other upstream 1221979 30686211 ~ 30696629 (-)

Expression


Co-expression Network