XLOC_004786


Basic Information

Item Value
gene id XLOC_004786
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 28933524 ~ 28946150 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009458
TATTAGAAAAGACTCGCTAGTGGAGTCCCGAAGAGGGGAGGGGGAAAAACACGTTTTTTTCTCTCTTGCAAATTTTTGCTCggaatatatatgtaaatgtttttCATCACATTGCGCAATTGACCTTATGTTATTCCCCGCAGCCATGGTTTTTTCGTTCTTATCATATTTATAACCGTCTTGCTGCTTTTCCTCTCAGTCTGCGTTGTGTGAGTCTGCCAAACACTGAACTGTTGTTTGCTCTCTTGGACCAGAGACAGTGAATTACGTAGTTGGGTGGGGTGACTTTAATGTGCCTATTTTGCTCAAACATACTTTGTACGAAGAGCCTGGGGTCTCTCGTGCTCTTACAAAAAAGCACTTATTTTCCACATGTTGTGTTGGTTTAAACGCGCGCTGCTTTAGGTTGTTTTCCTGGTAAGTTAGGTCTGACATCATATATTCACGTCAATATGACCGCCGCCGATATCATAACGTCGTCGATTTCCTACTACAAGAAAATTGGTTACTCTTCCACTAAATGTGTCACTTCAAAGTAAAAACGAAACTGTTCGCAGACAACGAGTGTGTTGTGAGGCTGCCATCTACGGTGTCCCACTCGTGTTGTGAATACAGAGATTGTATGGCCGTGTTTCAAAAGTTGCCGATGTACACTTTTGAGAACTGAGCTTCGTTTTCATATGTGAAGGATTCCGCTTTACAACACAAGCCGGGATTCTTGACTGTTATACTTTTGCTTAAGTGCATTTGAGGAACGTCAAACAGAAATATTTTAGCCATTCATAATATCTTCATTCACATTTCTGAAAGATTTATGAATCAATGTTTCTGATTCAGTGAAAAGAATCGatttatttgtgcaaaaaaaGGCATGTTGACAATGTTTTGGGTTTGAAAATAATAAGTTCATCGTCATTTATTCTGAAATCAAACAACAGTGTATTTTTTAGGGTAATTTGAATTCTAAGTACATTTGATTTCAGAGCCAATTACCAAAAGAATTCTGATTCTAAATGTTCTAAATATTATGAGAAAGAAATTAAATTCTTATATTTAATACCAGCAGATGAAACATTGCATTGATTCGGAAGGAATTATAAAAGTTTGATTCATTAAAGTTAATTCGTGTGTGAAACAATGGAATATGCCATATGTTTTTATCTCATTCAAGAGAATTAGCTCAGTGTTCATAGGACATTCTGCCATTTATGGAAGCCCGTTGCCGCCActgactaataaaaaaaatatatatatatatatatatatatttgaatataaagtcagaattctgagttataaagtcacattTCTGAGTTATAAACTCAGAATTTCAAGtcataaagtcagaatttcaAATTATAAAGTCAGATTTCTGAGTTTATAACTCTGAATTTTTACTTAATAGCTCAGAATTCTGAGTTGTATTACctgaaattctgactttatagcTAACttggaattgcgactttataactttCTGACTATAAGCTGGAATTCTGACTAGGTAACTTGGAAGTGCGACTTTATAACTTTCTGACTAAGCTGGAATTCTGACTAGCTAACttggaattgcgactttataactttCTGACTATAAGCTGGAATTCTGACTAGGTAACTTGGAAGTGCGACTTTATAGCTAACTCGGAACTGCGACtttataacttgcaattctgCCTTTATAGCTTGGAATTTTGAGTTTATAACTAGCTCAAAATTGCGACTTTATTACTCAGAATTCTAACATTATAGCtaacttggaattctgacttCATAACTGCGAATTGCAACTAAAACTCAGAATTATGACTTTATAACCTCAAATTCCGACTTTATAGCCAActcggaattgtgactttataacttattctgactttataacttggaaTTGCGACTTAaattcagaattctgactttatcccTTGTTATTCTGAATTtgctcagaattgcgactttataactcggaattctgacttcgTACCTCATTTTTCTAACTATAACTCAAAATTCGaacttttttttagtattttttttttttgtcagtcagTGGTGGAACGGGCTTCCATAGACCATTCTATCATGCAATGCAGTGTGAATTCTTTTTACAGAACATTGTTTTAATGTCCTAAGCTGAAgaaccttttgaattttttttttctggataagCTACAAGTGTTCTGGGAAATCAAGACTGGGCAAAATTGTCTCATAAATGTGGAATCAAAGAGTAGGCCTATAAGCCAAAAGATTGAGGACTAAATGCTTTTGATACAACACAAGAACCATGCTTATTCTCATTCCTTCTGAAAGCTACCGAGCAAACAGAACGTCTACATGTggttcccattttttttttttgggaaccAATCTAGAAATTCTGGTGATGTTCTCAGAAGAACATACATGGAccatgtttttgtattatttatttaatcacatTGCTGGAGAGATTTTTTGTACCAACCTATATAGAACATAAAACAGACAGATTGATGCACTCCTAGAGAGAACATTCTTTACGTAAAAGAAAACATCACTGACAAACTAGAAAACAACctaccaaaaagtaactcaaagtCAGTGGCTTTGTGGAATGTacagtagtatttatttattttttgcttttcatagtgttttatttttagccaCATTAATGTATAGCACTTTATCTTTTTGTTGTCAAACTTGTACATTAACGGAAATATGACACGTCTCTTAATTGTAAATGTCACATAcagaggaaaaataataataataacaggaaAATCAACCAAAAATGTGGGTTTGCATGAATGGGTTTACATGAATTATAGCTATTACACAATAGAGAAAAATCTATTTGACAAGGGTTTGTGTGTCCTTGAAAAGGTTgtcaatgtataaataaaacggCACTTTtctcattttaagtaagtttaAAAGAGGTAACGAGTCAAATTCAGcaagaaaaatatgaaaaaaaaacaaaggagattTCTAGAAAGctgattataaataaaacattttgcattCAGTACAAAAAGTTAAGAATGCATTCAAGAGACAACAACAAATTAGGATTttcataataaaacaataacatgtCTGAGGACAAAAGTGTGACAAATTTGTAAACTTAAAAACATAGGAacttacaaacacaaacaaaaaaacaaacaaatggggAGCTGTTTCTTCAACATGTCCACAAAAAGATAGAACACAAACAAGCCAAACTTAACgccattaaaacaaacaacttAAGTTCTCTGTTTTAAAAGTAGTCGGCTTTCTACTTTAATTTTAAGTCACGTTAAACGCCATCTACAAAGACAGCCCACAAGCTTTTGAGACACAGCCACACACAGAATCTCAGTACAGTACATAGGAAATGACTCATAGAGGAGTTGAACCCAACGCGTGGGTGTGGGCGCTATTAAAACAAGACTGAAAGTTTGGGGTGGGTCATTCACACGCGCTGCTTTTGCTATGCTAGAAACCCAGTTGTGGATTTTAATCTCTTGAAATCGCTGCGGGGATTTCAGTCCATAGAAAACTCAATGGATTCCAGTGCTACGTTGCGGTGTCTCTACTGGATTTCACTAGTGTTCGCCACGCTTATAAATGGAATAAACGCAGATAAAAGTTCAGCTCTCTGTGCGAAATCTGAATTCTGGAACAATgatgcagctgtgtgtgtgcctTGTTATGAGTGCAAACAGTACCCAAAAATTCCATCATGCGACACATGCCCACCCATAGAGCCTTCGGATTCCTGGAGGGTGGCAGCAATTACCAGTTTATCTGTCCTGGCAGCCGTAATTGTTTTTGGAGCCTTACTCATAGGCGTTCTAGTACATCAGTGCAGGTCCAGGAGGACCTTACGGGATCCAATTGAAGAGACAACGGGACCTCTTTATGCAGTATAGgttcttgaaacatttttttgtttttgtatgctTTGAAAGGGATTTCTTCGGTTCATGTGCGATCTCCTAAATGTTTGCAGCTCATGGACCTCAAGGTGACAGCATATGGAAATGGACTGTTACTCCAGTGAATTAATGCTCCAGTCGGGGAAGCATTGGCTGGTACCTCAACCACAGAGTATTCTATGAGTAGCatctaaattgtttaatttatttcatgttatGCATAGCGAATAGTTATGCACAAAAGCTGCACTGAGACCTTGTCATTCACTGTGCAGAATGAGTTCGCAAACCTTAGGTGCTAAGTGACACAACTGACAGCACGACAGCATTTTttacattcctttttttttttttttggaacacttAAGATGCTTCGACGGGTGTTTTGCAGAATTTAGTTTGAGGCCATTCCTGTTGCAGTTATAGTGCATTTCCACTTGATTAACTCCAATTTGTTTAAGATAGTActattttccttcttttttttttttttttacaccaataTGCCTCCTAAACAGATTTAGCATGGCACATAGCCATTTGAATGTATTTGTATACTTCATTTGTACAGtttagttatatatttttatagtgttGAAATACTACGCACTGTAGATGTAGCCCTGTGTACAACGATGTTCTGACACTGACCGGCTCAGCAGCCCGTCTATGGCATTGATGAAGACTCTGGAGACAGAGGGAAACTGCAAAGACAAAGCAGCCGATGAAACAGAAGAATCGACAACTGACAATTCAGATTCTCTCTATCAAAAAACAAATAGCCGCAGGTGTCAGAATCTTAATTTTCCTGCCTTTATGCACATACGAGATTAGATAGTGATATTTACATACTTGTATCTACATTTAATCTCCCATGTCTAATCGTCTTAGTAAAATGTTACAAAAGGATAGAGTCATCCATTTCAGGTGTGTAGCTAGCAGTGGGCATTaggaaatgtatgtatttttatacagGAGATAAGAGTAATTTTTATAAAGCGTATAAGACATTAAATGTTTGGATGAAATCAAACAAGAACAGGTGAATCTCTAAAACCTACCAAGATCATGTCAGGGGTTTCATTTCACCCTagatcagggatgtccaaactcggagggccggtgtcctgctgagtttagcagctagctctctgcaactcgcacatggttgcccactaaagctaagcagggctgtgcctggtcagtacctggatggaagaccacatgggaaagctaggaaGCTGCCGCAAGTGGTgttggtgaggccagcagggggcgcccaacctgtggtctgtgtgggtcctaatgccccagtatagtgatggggacgctatactgctcagtgagcgccgtctatcggatgagacgttaaaccaaggtcctgactctctgtggtcattaaaaatcccaggatatccTTCGAAagagagtaggggtttaaccctggcatcctggccaaatctgcccactggcctctgtccatcattgcCTACtaatcatccccatatcataattggcttcatctctctgtctcctttccaccaatcagctggtgtgtgtggtctggcacaaaatggctgccgttgcgtcatccaggtggatgctgcacactggtggtggatgaggagattccccctatttgtaaagcgctttgagtgcccagaaaagcgcaatataaatgtaaggaattattattaacttgcttcaacacacctgccaggaagtttctagtatgtctAGTAAGAGGTTGATTA
>TCONS_00010946
caaacaatgaaacaaacaaaccccATACATGTTTACTGTATTAAAATCAGTCAACAGCAATTCTCACACCTTTAAATTGAGTTGAACTGGCCAACAGTTGACGTCTGATAGCAGTTGAGTAAGCAATGTATTTTCACAGTAAATCAAagcattttcaaaagcaatgaCACCTCCTCTGTCTTCATCAGAATCAGCCGGTGCTCGTCATGTGTATGACTGCAGGTGATATTGGCTTGCAGATGTTTATCGTCAGCGGACCGCAGCTGTAAGCTTTTGTGACTTTCTGTGGTACCTGCCTCACCGCGTTTTCCCTTTATGAATCTCCCCTGATTACAAGCATGTGCGCAAGACAAACTTTAGCCCCGCAGCTCTCACAGATGACGCTTTCTTACAAGCCATTAGTTCTCTTAAAGTCACTTTTCCATGTCCTCAGTTCTCGCCGTGGGACACTTTGCATGCACTCCAGGGCCACATCATAGTCTGGCCGTCAGCTTAGACTTGCTTACGCACGCAGAGCATGAGTAATACCGTTTCCCCGCGAGTGCAGCACCACATCACTACAACGGAATTTCCCAGCTCATTTCATATGAAATAGAGGCGAAGCAAAGAAAGCTCTTGGATGTAGCCCTTATTCAGTCGTCAAACGTAGCCACATGCGAAAATCCAAACCCATTCGAAGTTATCAGGAAACGTGTTTTTATTGTCAGCGTCGTTGTTTTCTGCTACTTCTGTCTGACACCTTTTTAAGTGTGAATCCTGTCTCTTTTTTGTCAGGTTCAGCTCTCTGTGCGAAATCTGAATTCTGGAACAATgatgcagctgtgtgtgtgcctTGTTATGAGTGCAAACAGTACCCAAAAATTCCATCATGCGACACATGTGAGTATTTTTGATCAAAGTTCACGAATGATTCGGTTTTTGCATCATCACGTGACTAGAAGATCTCTGTTGTATAGACGCCAATTTCAAAAATAAGAAAGGACCggtgttctgtcgatttgtccaaaaagtaggtagcacattttaaaaaacataatatgCTACTTCTCAGATTTTGCTACCCGTGTAAATTGtaatgtggagtagtgtgatatgaagctgtaatatcactctaatccctaaccccaacctcaaaaccactctctgaaataaaggtacaaaagcgaTCACTGCGGTGGTACCTATTTAAAAGCTaaacatttgtacctaaagggtccctATTAATtcctcaaaggtacatattatTACCtagaaagtacaaaagtgtacttcttaaaatgtttaggtacaaGTATAAGCTTTTGAGGTAACAATAGACCCTTtaatacaaatgtgtacctttttaaaaggtaccactccagtgacagctcttgtacctttatttccgagagtgtagcataatctgatgggtagggtAAAATGTGAGGACAACGGCAAATTGTGCCTTTTATCCTTAAGCTTCATCTCCACAATTTGGAAGAAAATACTGAAATTTCATTTACAATTCTgagaaaatctgaatttaaaaataacaacagtgACTCAAGTGTGAATTTCTTGTTGTTCATATTTAGCAATTCTTAGtttattaaactgtaaaattatcAAGTTTATATTAAGATATAAACTTGTAGGATAAAAACTTCATGTATGTTCATTCTATTAAGTTTCATTCTATATTTTAATCTGAATAAAGATTAATACGATTTGCTGGAAAAGATTCAAAGACCCAAACCAATCTTTCCATCACTATACAGCATGAGCTTGAACACTCATGAAAATGCACTGTAAGTTGATGGTTTTGCAATAGGTCAGAGCTTACGTACACAGAAGGAGTGGTCAGATTCTTTCTGTATGATCCGAATAGCTGGACGTCTTCCAGTAACATTGTCCTGTGTTTAAGGCCCACCCATAGAGCCTTCGGATTCCTGGAGGGTGGCAGCAATTACCAGTTTATCTGTCCTGGCAGCCGTAATTGTTTTTGGAGCCTTACTCATAGGCGTTCTAGTACATCAGTGCAGGTCCAGGAGGACCTTACGGGGTGAGATGTTAACATTATAGAATCTTTTTAACAATGAGTACAAGACTGAGAAGTAACAACTTTTTCTGTCCACAGATCCAATTGAAGAGACAACGGGACCTCTTTATGCAGTATAGgttcttgaaacatttttttgtttttgtatgctTTGAAAGGGATTTCTTCGGTTCATGTGCGATCTCCTAAATGTTTGCAGCTCATGGACCTCAAGGTGACAGCATATGGAAATGGACTGTTACTCCAGTGAATTAATGCTCCAGTCGGGGAAGCATTGGCTGGTACCTCAACCACAGAGTATTCTATGAGTAGCatctaaattgtttaatttatttcatgttatGCATAGCGAATAGTTATGCACAAAAGCTGCACTGAGACCTTGTCATTCACTGTGCAGAATGAGTTCGCAAACCTTAGGTGCTAAGTGACACAACTGACAGCACGACAGCATTTTttacattcctttttttttttttttggaacacttAAGATGCTTCGACGGGTGTTTTGCAGAATTTAGTTTGAGGCCATTCCTGTTGCAGTTATAGTGCATTTCCACTTGATTAACTCCAATTTGTTTAAGATAGTActattttccttcttttttttttttttttacaccaataTGCCTCCTAAACAGATTTAGCATGGCACATAGCCATTTGAATGTATTTGTATACTTCATTTGTACAGtttagttatatatttttatagtgttGAAATACTACGCACTGTAGATGTAGCCCTGTGTACAACGATGTTCTGACACTGACCGGCTCAGCAGCCCGTCTATGGCATTGATGAAGACTCTGGAGACAGAGGGAAACTGCAAAGACAAAGCAGCCGATGAAACAGAAGAATCGACAACTGACAATTCAGATTCTCTCTATCAAAAAACAAATAGCCGCAGGTGTCAGAATCTTAATTTTCCTGCCTTTATGCACATACGAGATTAGATAGTGATATTTACATACTTGTATCTACATTTAATCTCCCATGTCTAATCGTCTTAGTAAAATGTTACAAAAGGATAGAGTCATCCATTTCAGGTGTGTAGCTAGCAGTGGGCATTaggaaatgtatgtatttttatacagGAGATAAGAGTAATTTTTATAAAGCGTATAAGACATTAAATGTTTGGATGAAATCAAACAAGAACAGGTGAATCTCTAAAACCTACCAAGATCATGTCAGGGGTTTCATTTCACCCTagatcagggatgtccaaactcggagggccggtgtcctgctgagtttagcagctagctctctgcaactcgcacatggttgcccactaaagctaagcagggctgtgcctggtcagtacctggatggaagaccacatgggaaagctaggaaGCTGCCGCAAGTGGTgttggtgaggccagcagggggcgcccaacctgtggtctgtgtgggtcctaatgccccagtatagtgatggggacgctatactgctcagtgagcgccgtctatcggatgagacgttaaaccaaggtcctgactctctgtggtcattaaaaatcccaggatatccTTCGAAagagagtaggggtttaaccctggcatcctggccaaatctgcccactggcctctgtccatcattgcCTACtaatcatccccatatcataattggcttcatctctctgtctcctttccaccaatcagctggtgtgtgtggtctggcacaaaatggctgccgttgcgtcatccaggtggatgctgcacactggtggtggatgaggagattccccctatttgtaaagcgctttgagtgcccagaaaagcgcaatataaatgtaaggaattattattaacttgcttcaacacacctgccaggaagtttctagtatgtctAGTAAGAGGTTGATTA
>TCONS_00009459
tttagcagctagctctctgcaactcgcacatggttgcccactaaagctaagcagggctgtgcctggtcagtacctggatggaagaccacatgggaaagctaggaaGCTGCCGCAA

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0050877 nervous system process biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0009581 detection of external stimulus biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0045202 synapse cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031680 G-protein beta/gamma-subunit complex cellular_component
GO:0098793 presynapse cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0031681 G-protein beta-subunit binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000110377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009458 False 5668 lncRNA 0.38 4 28933524 28946150
TCONS_00010946 False 3917 lncRNA 0.41 1 28942234 28946150
TCONS_00009459 True 115 rRNA 0.54 1 28945532 28945646

Neighbor

gene id symbol gene type direction distance location
XLOC_004785 rnf40 coding upstream 242 28910762 ~ 28933282 (+)
XLOC_004784 phkg2 coding upstream 32340 28888975 ~ 28901184 (+)
XLOC_004783 nfe2l1b coding upstream 67429 28854410 ~ 28866095 (+)
XLOC_004782 cdk5rap3 coding upstream 95772 28825735 ~ 28837752 (+)
XLOC_004781 pnpo coding upstream 126340 28799988 ~ 28807184 (+)
XLOC_004787 znf668 coding downstream 9616 28955766 ~ 28960633 (+)
XLOC_004788 si:rp71-1c10.10 coding downstream 16440 28962590 ~ 28963476 (+)
XLOC_004789 si:rp71-1c10.8 coding downstream 40158 28986308 ~ 28988358 (+)
XLOC_004790 valopb coding downstream 49792 28995942 ~ 29012892 (+)
XLOC_004791 AL732488.1 coding downstream 67423 29013573 ~ 29013690 (+)
XLOC_004779 NA non-coding upstream 315559 28617701 ~ 28617965 (+)
XLOC_004777 NA non-coding upstream 552269 28377030 ~ 28381255 (+)
XLOC_004762 dre-mir-10a non-coding upstream 1798557 27134869 ~ 27134967 (+)
XLOC_004754 BX469896.1 non-coding upstream 2036908 26894321 ~ 26896616 (+)
XLOC_004752 NA non-coding upstream 2099332 26737431 ~ 26834192 (+)
XLOC_004796 NA non-coding downstream 366415 29312565 ~ 29373414 (+)
XLOC_004797 BX072570.2 non-coding downstream 485925 29432075 ~ 29432191 (+)
XLOC_004799 BX004794.2 non-coding downstream 865694 29811844 ~ 29811960 (+)
XLOC_004800 CU464184.2 non-coding downstream 1013790 29959940 ~ 29960054 (+)

Expression


Co-expression Network