LOC120553928


Basic Information

Item Value
gene id LOC120553928
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15724157 ~ 15726157 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792534.1
GAAGTTTCTGACCAGGAGTCCTCCCAACAGGACCAGGAGCTACTCAAATAAGAAGGATCCTCTATTCAGTTCTTAACCATCTCAACGGTAGCtgaaaaagCAGCAGAAATGGAAGTGTTGCTGGTTTCTGGAATCTCAGATGCAGaGGATGCTCATATCCCCTTCAGTGTCGTGGTGACAAACTCAGTAACGCCCCACAATCCGAAGACATACAGCACTTACGTGCTTGAGAGAGGAATCTTACTGGGTGGATTGAGGAGACTGCAGGACTGTGGCAAAGACTTTATGTTCACCTACACAGAGGATCCAAACTATGGCCCGTTCCTACAGAGTGTGAACGGTTTGGCTGGAAATCCAGAGCAACATACCTACTGGGAGCTCCTGGGCAAGAAACCCAATGGCCCAATCATCAGACTTGATGTTGGTATTGGATGTTACATTCCCTGTGCAAACGAGGAAATCATCCTGAACTACACCAAGTACTGAAAATCAAGATAACTGGACATCAAAATGGGACCAGATTCAAGTGTATCATTATATTTTtcataattattaataaaaaaagatgccTTGGTGTTTGTTGTTGGAGAGAATGAACAGCTAAGCACATGGTCCTTCATGCATTGAATTAAACAGCTTACAAAGGCAAGTAGAGACATGGAAATTAACATTGGTTGTATGAGTGGGATAgaaacaattaatattttatcaatatttttttgtatttacaaatgAAACTAAGCCTTGGATCAATAATGTTCAAATCAATTATTTCAATTTGATGAAAATTTGTTTTTCAAGTTCTGATATTGGTAATCTTTTGAAACACAAAGACATAAATGCAAGACATGATTTATATAGAAAATGCACTTTGTAAACTAGTTTTTTATCACAGATATTTTTCAGAGGCAATATTCCACGGTCAGAGTATGAATTAAACTGAGCAAACGTTAGGATAATTGAGCTAAAGGGAAGCTGTTATTGGAAGGAACTGTGTTTCCAATAGAAATTATGTTGGTGACAGCACatgtaattaaaatgaaataataaatgcaAGGTTGAAGAATTAAATCTGTTT
>XM_039792535.1
tcactGGTTATTTTACAATGATGTGATACGCTACTGCATAAGAGAAGTTTCTGACCAGGAGTCCTCCCAACAGGACCAGGAGCTACTCAAATAAGAAGGATCCTCTATTCAGTTCTTAACCATCTCAACGGTAGCtgaaaaagCAGAAATGGAAGTGTTGCTGGTTTCTGGAATCTCAGATGCAGaGGATGCTCATATCCCCTTCAGTGTCGTGGTGACAAACTCAGTAACGCCCCACAATCCGAAGACATACAGCACTTACGTGCTTGAGAGAGGAATCTTACTGGGTGGATTGAGGAGACTGCAGGACTGTGGCAAAGACTTTATGTTCACCTACACAGAGGATCCAAACTATGGCCCGTTCCTACAGAGTGTGAACGGTTTGGCTGGAAATCCAGAGCAACATACCTACTGGGAGCTCCTGGGCAAGAAACCCAATGGCCCAATCATCAGACTTGATGTTGGTATTGGATGTTACATTCCCTGTGCAAACGAGGAAATCATCCTGAACTACACCAAGTACTGAAAATCAAGATAACTGGACATCAAAATGGGACCAGATTCAAGTGTATCATTATATTTTtcataattattaataaaaaaagatgccTTGGTGTTTGTTGTTGGAGAGAATGAACAGCTAAGCACATGGTCCTTCATGCATTGAATTAAACAGCTTACAAAGGCAAGTAGAGACATGGAAATTAACATTGGTTGTATGAGTGGGATAgaaacaattaatattttatcaatatttttttgtatttacaaatgAAACTAAGCCTTGGATCAATAATGTTCAAATCAATTATTTCAATTTGATGAAAATTTGTTTTTCAAGTTCTGATATTGGTAATCTTTTGAAACACAAAGACATAAATGCAAGACATGATTTATATAGAAAATGCACTTTGTAAACTAGTTTTTTATCACAGATATTTTTCAGAGGCAATATTCCACGGTCAGAGTATGAATTAAACTGAGCAAACGTTAGGATAATTGAGCTAAAGGGAAGCTGTTATTGGAAGGAACTGTGTTTCCAATAGAAATTATGTTGGTGACAGCACatgtaattaaaatgaaataataaatgcaAGGTTGAAGAATTAAATCTGTTT
>XM_039792537.1
gtgacctatttttttttttttgctattttaaATGCTGCTTGCCAATTTACATATTTGGGACAATTTTTAGAGATATTGTGGGTTGTTTGACATGAGTTGGTATGAGTTACTCACCTGCAGTGGTTCAGATTGGTTCAAAGATCCCTGCCTGAGCTAATGTCTACGCATCACAGCAGAAATGGAAGTGTTGCTGGTTTCTGGAATCTCAGATGCAGaGGATGCTCATATCCCCTTCAGTGTCGTGGTGACAAACTCAGTAACGCCCCACAATCCGAAGACATACAGCACTTACGTGCTTGAGAGAGGAATCTTACTGGGTGGATTGAGGAGACTGCAGGACTGTGGCAAAGACTTTATGTTCACCTACACAGAGGATCCAAACTATGGCCCGTTCCTACAGAGTGTGAACGGTTTGGCTGGAAATCCAGAGCAACATACCTACTGGGAGCTCCTGGGCAAGAAACCCAATGGCCCAATCATCAGACTTGATGTTGGTATTGGATGTTACATTCCCTGTGCAAACGAGGAAATCATCCTGAACTACACCAAGTACTGAAAATCAAGATAACTGGACATCAAAATGGGACCAGATTCAAGTGTATCATTATATTTTtcataattattaataaaaaaagatgccTTGGTGTTTGTTGTTGGAGAGAATGAACAGCTAAGCACATGGTCCTTCATGCATTGAATTAAACAGCTTACAAAGGCAAGTAGAGACATGGAAATTAACATTGGTTGTATGAGTGGGATAgaaacaattaatattttatcaatatttttttgtatttacaaatgAAACTAAGCCTTGGATCAATAATGTTCAAATCAATTATTTCAATTTGATGAAAATTTGTTTTTCAAGTTCTGATATTGGTAATCTTTTGAAACACAAAGACATAAATGCAAGACATGATTTATATAGAAAATGCACTTTGTAAACTAGTTTTTTATCACAGATATTTTTCAGAGGCAATATTCCACGGTCAGAGTATGAATTAAACTGAGCAAACGTTAGGATAATTGAGCTAAAGGGAAGCTGTTATTGGAAGGAACTGTGTTTCCAATAGAAATTATGTTGGTGACAGCACatgtaattaaaatgaaataataaatgcaAGGTTGAAGAATTAAATCTGTTT
>XM_039792538.1
GAAGTTTCTGACCAGGAGTCCTCCCAACAGGACCAGGAGCTACTCAAATAAGAAGGATCCTCTATTCAGTTCTTAACCATCTCAACGGTAGCtgaaaaagAAATGGAAGTGTTGCTGGTTTCTGGAATCTCAGATGCAGaGGATGCTCATATCCCCTTCAGTGTCGTGGTGACAAACTCAGTAACGCCCCACAATCCGAAGACATACAGCACTTACGTGCTTGAGAGAGGAATCTTACTGGGTGGATTGAGGAGACTGCAGGACTGTGGCAAAGACTTTATGTTCACCTACACAGAGGATCCAAACTATGGCCCGTTCCTACAGAGTGTGAACGGTTTGGCTGGAAATCCAGAGCAACATACCTACTGGGAGCTCCTGGGCAAGAAACCCAATGGCCCAATCATCAGACTTGATGTTGGTATTGGATGTTACATTCCCTGTGCAAACGAGGAAATCATCCTGAACTACACCAAGTACTGAAAATCAAGATAACTGGACATCAAAATGGGACCAGATTCAAGTGTATCATTATATTTTtcataattattaataaaaaaagatgccTTGGTGTTTGTTGTTGGAGAGAATGAACAGCTAAGCACATGGTCCTTCATGCATTGAATTAAACAGCTTACAAAGGCAAGTAGAGACATGGAAATTAACATTGGTTGTATGAGTGGGATAgaaacaattaatattttatcaatatttttttgtatttacaaatgAAACTAAGCCTTGGATCAATAATGTTCAAATCAATTATTTCAATTTGATGAAAATTTGTTTTTCAAGTTCTGATATTGGTAATCTTTTGAAACACAAAGACATAAATGCAAGACATGATTTATATAGAAAATGCACTTTGTAAACTAGTTTTTTATCACAGATATTTTTCAGAGGCAATATTCCACGGTCAGAGTATGAATTAAACTGAGCAAACGTTAGGATAATTGAGCTAAAGGGAAGCTGTTATTGGAAGGAACTGTGTTTCCAATAGAAATTATGTTGGTGACAGCACatgtaattaaaatgaaataataaatgcaAGGTTGAAGAATTAAATCTGTTT

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0019538 protein metabolic process biological_process
GO:0007281 germ cell development biological_process
GO:0006508 proteolysis biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792534.1 False 1078 mRNA 0.37 5 15724157 15726114
XM_039792535.1 False 1118 mRNA 0.37 5 15724157 15726157
XM_039792537.1 True 1148 mRNA 0.37 5 15724157 15725999
XM_039792538.1 False 1072 mRNA 0.37 5 15724157 15726114

Neighbor

gene id symbol gene type direction distance location
LOC120549813 NA coding downstream 17881 15702979 ~ 15706276 (-)
LOC120549823 NA coding downstream 25704 15695804 ~ 15698453 (-)
LOC120570576 LOC104937503,LOC103370335,LOC101474512 coding downstream 41365 15651473 ~ 15682792 (-)
tnfaip1 tnfaip1 coding downstream 86201 15626090 ~ 15637956 (-)
sgsm2 sgsm2 coding downstream 99897 15538653 ~ 15624260 (-)
sorl1 NA coding upstream 178732 15904889 ~ 16008065 (-)
bco2b bco2,LOC104948304,LOC101485476,LOC102288764 coding upstream 290241 16016398 ~ 16023501 (-)
il4i1 il4i1 coding upstream 338287 16064444 ~ 16072903 (-)
LOC120547208 adamts15 coding upstream 463974 16190131 ~ 16208976 (-)
LOC120553834 NA coding upstream 593340 16319497 ~ 16336625 (-)
LOC120549843 NA non-coding downstream 10068 15713132 ~ 15714089 (-)
G17264 NA non-coding downstream 81167 15642003 ~ 15642990 (-)
G17253 NA non-coding downstream 188930 15533876 ~ 15535227 (-)
G17225 ulk2,LOC104954052 non-coding downstream 282647 15434214 ~ 15441510 (-)
G17222 NA non-coding downstream 327818 15396102 ~ 15396339 (-)
G17389 NA non-coding upstream 290765 16016922 ~ 16048016 (-)
G17466 NA non-coding upstream 674466 16400623 ~ 16400836 (-)
G17499 NA non-coding upstream 691138 16417295 ~ 16418742 (-)
G17571 NA non-coding upstream 970656 16696813 ~ 16698009 (-)
G17579 NA non-coding upstream 984612 16710769 ~ 16766469 (-)
G17287 NA other downstream 5116 15695554 ~ 15719041 (-)
lyrm9 lyrm9 other downstream 73110 15646641 ~ 15651047 (-)
si:ch1073-145m9.1 LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711 other downstream 398358 15318840 ~ 15325799 (-)
caln1 caln1,LOC103372560,LOC107097061 other downstream 1401324 14247928 ~ 14322833 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other downstream 1637393 14078577 ~ 14086764 (-)
sdhdb sdhd other upstream 319851 16046008 ~ 16060408 (-)
G17597 NA other upstream 1122004 16848161 ~ 16930994 (-)
xaf1 LOC107094331 other upstream 1746790 17472947 ~ 17478903 (-)
LOC120552194 NA other upstream 2073842 17799999 ~ 17890661 (-)
zgc:165508 fam131a,LOC102799247 other upstream 2401309 18127466 ~ 18151968 (-)

Expression


Co-expression Network