her13 (LOC103373083,LOC104919393)


Basic Information

Item Value
gene id her13
gene name LOC103373083,LOC104919393
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19431359 ~ 19434295 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792615.1
CAGCCACTCAGCGCCAGCACCACGTCTCACTAGGATTGCACAATAAACACAGGGCGCCTCGCTTGCCTGCGAGTTTATCGAtcccgcccccccccctccccttcctgtAACCGGTTCCGTTTGCCAGCTGCACCTCGCTGAcggaaaaaaaagcagcagtgGAAGAAGCCACACAGAAAGGGCGATTCAACCAACATGGCCCCCTCGGCTAGGCCCAGCAGCACTGGACTTGATATGGAAGAAGATGAGTCCTACCACGGGATTCACAAAGCGGACAGAAAGACCAGGAAACCTCTGGTGGAGAAGAAGAGGCGAGCTCGCATCAATGAGAGCTTGCAGGAGCTGCGGACTTTGCTGGCAGACACAGACTTTCATTCCAAGATGGAGAACGCAGAGGTGCTGGAGATTACAGTGAAGAAGGTGGAGGACGTACTAAAGAACCGAACCCAAGaaacagacacactgaACCAAGAAGCCAGTGAGAGGTTTGCGGCAGGCTACATCCAGTGCATGCACGAGGTCCACATGTTTGTGTCCAGCTGTCCTGGGATAGATTCAACAGTTGCGGCGGAGCTCCTTAACCATCTCCTGGAGTGTATGCCCCTGAATGAGGACCACCTCCAGGATGTGCTGATGGATCTAATTACTGACACTTCTGGGAGTAACGGCAGCACTTGGCATGGAGGCGACGAGGCGCTCTGCGCGACTCTGGCTTCACCTGGAGGAAGGAGTCTATCCAGCAGCTCGTCCTCGGCCCTCTCCCCGGCCCCCTCCACCACCTCCAGCGAGGACCTATGCTCCGACTTGGACGAGACCGACAGTGAGCACAACCACAGTTCCACTGAGGGCTTGGAGAATAGGGAGGGCCTGAGCATGCCCACCATGACCTACCATCAGTCTATGTGGAGACCCTGGTAGGGGTCTGGGGTTTTGATGGAATGCGGTCGGGATATGTTGAAGCTCCTTTCTTTGAAGACATGACAAAGGGCCTCTTACTGAAAAGGAAAAGTCCACCCTACGGCACACGACACTTCACAAATAACCATTTTGGATGGTGTAACTTTCATTTCTTGGCTCCCTTGCAGATAACTGGCCACGAGCATGGATTGATTTTCTGGATTCTACATATTGATGTTCAATCATCACATCTCTTCTCTAAGACACAGAGATACAAATTTGCCCACTGACAACAGCCTCGGTTTATCCCAGTGCAGTGCAACCGCAGATCACTTTGCGTTTTGTGGAGGGAACCTGGCTGTGGCTTTTTCACCCTAAACTGAATGCTGCAGGTTTGAATCTTTTCCTTGGCATTCTGGGAGATGTAGGAATTCGCTCAGTGAAATAGAAGTAGAAAAACACTCCTTAAGTGCTTTGGATATCATagaaaaaaatgtcttaaagaAAGGTTTTCTTTTATCTCATTACATGGGCCCTTTCTCTCAAGGGCCCCTCCAGCTTGGGGCCTCCTGAAAGtgttctctctttccttttcagTAAGGACTCTATGGCTTTGAGTCCGCGTttgtgacttcttttttttttacacatggaGAAAGATGAAGCATTCACTTATAAACCAGCAAAGGACAGACGAGGAACCGTTCACTTTTTTGCATCTATAACTCTGTGTAAATAGCTCTTTTTAGAAACCGAGAAGTTTGGCAATGCCTCTGattaatataaatatttctATTGTATTTCATAAAGGCCTGTAGTTTATTGGACCATTAGCCTCCTTCAGAATGACCACTTTATGTTGTAATGATGTTTAGAAAAGCCAGTAAAATGTTTGaatttgctaaataaaataatgtaattgaaAA

Function

NR:

description
PREDICTED: transcription cofactor HES-6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09087 HES2_6_7; hairy and enhancer of split 2/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792615.1 True 1823 mRNA 0.48 4 19431359 19434295

Neighbor

gene id symbol gene type direction distance location
mrps22 mrps22,LOC103373397 coding downstream 173537 19252336 ~ 19257822 (-)
LOC120552531 NA coding downstream 239569 19190494 ~ 19191790 (-)
LOC120552522 NA coding downstream 262233 19168047 ~ 19169126 (-)
LOC120552541 NA coding downstream 265082 19165388 ~ 19166277 (-)
LOC120547915 clstn2 coding downstream 289666 18892806 ~ 19141693 (-)
her8.2 LOC100691593,LOC105923939 coding upstream 3945 19438240 ~ 19440140 (-)
LOC120548698 NA coding upstream 32368 19466663 ~ 19467908 (-)
rinl NA coding upstream 80968 19515263 ~ 19525581 (-)
sirt2 sirt2 coding upstream 91426 19525721 ~ 19532651 (-)
dmac2 atp5sl,LOC102790974 coding upstream 98815 19533110 ~ 19536541 (-)
G18127 NA non-coding downstream 25998 19383403 ~ 19405361 (-)
G18002 NA non-coding downstream 196902 19230919 ~ 19234457 (-)
G17986 NA non-coding downstream 276108 19154962 ~ 19155251 (-)
G17964 NA non-coding downstream 681958 18749198 ~ 18749401 (-)
G17936 NA non-coding downstream 837686 18592975 ~ 18593673 (-)
G18155 NA non-coding upstream 21918 19456213 ~ 19542671 (-)
LOC120573122 NA non-coding upstream 104080 19538375 ~ 19541130 (-)
G18179 NA non-coding upstream 191108 19625403 ~ 19628640 (-)
G18184 NA non-coding upstream 214921 19649216 ~ 19649652 (-)
LOC120548779 coq8b,LOC103364879,LOC107395920,LOC108247334 non-coding upstream 320592 19754887 ~ 19755993 (-)
LOC120545639 eif4g1 other downstream 1208466 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 1279391 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 1540698 17799999 ~ 17890661 (-)
xaf1 LOC107094331 other downstream 1952456 17472947 ~ 17478903 (-)
G17597 NA other downstream 2500365 16848161 ~ 16930994 (-)
fbxo46 fbxo46,LOC102786997 other upstream 266932 19701227 ~ 19717307 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other upstream 366456 19800751 ~ 19810130 (-)
LOC120547993 NA other upstream 702777 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 1659882 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 1802893 21237188 ~ 21261923 (-)

Expression


Co-expression Network