pgap2 (LOC103353585,LOC100712494,LOC102213892)


Basic Information

Item Value
gene id pgap2
gene name LOC103353585,LOC100712494,LOC102213892
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 38767545 ~ 38770608 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039820919.1
TGATTTCGTTTTTCAGACTTTAGATGTTCAGTAAATGCATGTATATGTAACAAACTATGGTATCAAAATGTCCTAGAGCCTAATAATTGAGTGAATACGGACAGCATATAACTGCATACATTTGTACTAATCTCCATAAATACCCTTATACAATATGTAGCCATTTGTATTTCGAGTTGGAGAAAGTTATTAATGCCACATGCATTTGCCTTTGCAAGATGTTTTTAAATCATATGTTTTCACTGTTCAGACCAAGATGCTACAAGGCTCAAGTATCTTGGGGCATGAGAGGCCCCTGGTCATCAGAGTATCTTTCCCCGCCTGTGTTGTGGCCACTGTGTGCCTACCACTGCTTGGCCTAATAACTTGTGTCTTCATATCCTCCATTTTTCATTATGAGGACTCTACTAGTACACATTGCCagGTTCCTAACTACCTGCCATCTATCAGTGCCTCAATAAGCCTAAGTCCTGAGTGCCACATATGGCGGTTCTGTATCGGACTGCACTCGGCACCAAGGATCCTGGTGGCATTTACCTACTTCAAATTTTACAAAACACGTTTTTCCTCGAGGTGCCCTGAGAGTTCACTCTGTTGCTTCAACCTGGCCTTTTCTATTTGTGAAAACCTCGGCCTCTTGCTCCTCACATATGTATCATCCAGTGAAACATACTTTGTACATAAGGAAGGTTTTGTGCTCTTCATAGTCAGTTCCCTTATCCACATGCTGATAACCTGCCGTTTATGGAAGACTATTAAGAAGTATTCATTAAGTCCTGAGGATGCCAAGTCCCACCATTGGAAAGTACGCTTCTTACTTTTCAACGTATCCTTCTGTGCTTTCGCCATATTCTTTTATTGGAAACACAACATGTACTGTGAATCAGGGAGTTACACATTATTTGCCCTGTTTGAGTATCTAGTGGTCTTCTCCAATATGGCCTTCCATCTCACAGCAGTGTGGGACTTTAAGAGCCGAGAGGTCATGGTCATCTCATCCTCCGAAGATAAAGACTTCTGACTAGAAACTCAAGGACTAAGTGCTAAATGTACAACCACTCAAACCCCTGATGTTAACAGCCTTGACCCTGCACAAGGAGAAGAGTGGGGTGAAGGCCTTTTCCATATTTCCATGATGACGATTCCGAAGTCCTTTGAGGGTGTAGATGTCAGACAAGTTTGAAGAAAAGATATGCACATGTGTTACTGTATGGTCAATTCAATGAGCTATAAGTGCATTTTTGTGCCTCATTGTCTCATTCATCGAGTACACTATTTTATGTAATGTGAAATTTCAACTTTTGTACAATGCACAAAATAATGTGGTCGTACTGTATTTGCAAAAGTAAAGTGACAGTCCTTCAAATATGCATAGCCTTTATGGTTATAATTTTAGGGAATGAAAATAGTGGAAAGCAGGGTGTTCATGTGGTCTTTCCTTTGAGCATTCACAACTTTAATACTGTCAACACAGAAACAATAGCAAAGTGACACAGTGAAGCTATTTTACACCATTCCCAAAAACATTTGCCACCCAGGGCCACTCTACCATCACTCTTCAGATGCAGTGTTACGATATCTGTTGTTAAAAGACTTTGTCATTAGCCATACTTAtatttcaattttcattttcatatttcaaCAAATATCTATGCTTTTAATAATTGTTTGATtgttaaatgttgaaatgtATGCACCagttctcaaatgtgaatactCTGTACTACATGTGACCTCAATGGCCATTGTTAATCTGATGCAGGATTACACATCGCTTACCTAACTGTGACTCAAAAGTTAATGCTGCTGGATAAAAACCTAGTAGCCATGTACAAAGGAA
>XM_039820926.1
AAAAACAGTCGATCCTGCGTTCTGTTGCAGCACCACGGAGAGCTCCCATCATCGTCCCCCACTAACAATTAAGCgatatttgtgttttgtttttgttttaaacaggCTGTTTTAACATTGTTAAGAGACATATTTTATACCCTACATTATTTAAcatgtatgtgatgtgtgtatctttttttttgatAGGCTGCGCCGCGCAAACGTAGCAGCATCAGCACTCTCCTCCGCTCACTTTCTCTTCCGGGTGCTGATGTTTTTCACGCACTGTATTTTCCTCCTTCTTTCTGTCGCCCAAGAAGAAGGATGCTGCACTCATTCGAATGGAATTTAGTGGATGCAAAATTGTCACAGGAATGTAAGATGGCTGGATGATCCCCAGCCCTTTTCTAAAGGCATTGCACCCTATCGGGAACATTCTGCTCCACCCTGCTGCCTGATATCATGAATGTTATTGTTATAGCGTCGTTATTGACGAGCCCAGTGCGTTGAGTTTGTGGTGGCAATTATTAGGAAACAGTAAACCAAGTGGAGACCAAGATGCTACAAGGCTCAAGTATCTTGGGGCATGAGAGGCCCCTGGTCATCAGAGTATCTTTCCCCGCCTGTGTTGTGGCCACTGTGTGCCTACCACTGCTTGGCCTAATAACTTGTGTCTTCATATCCTCCATTTTTCATTATGAGGACTCTACTAGTACACATTGCCagGTTCCTAACTACCTGCCATCTATCAGTGCCTCAATAAGCCTAAGTCCTGAGTGCCACATATGGCGGTTCTGTATCGGACTGCACTCGGCACCAAGGATCCTGGTGGCATTTACCTACTTCAAATTTTACAAAACACGTTTTTCCTCGAGGTGCCCTGAGAGTTCACTCTGTTGCTTCAACCTGGCCTTTTCTATTTGTGAAAACCTCGGCCTCTTGCTCCTCACATATGTATCATCCAGTGAAACATACTTTGTACATAAGGAAGGTTTTGTGCTCTTCATAGTCAGTTCCCTTATCCACATGCTGATAACCTGCCGTTTATGGAAGACTATTAAGAAGTATTCATTAAGTCCTGAGGATGCCAAGTCCCACCATTGGAAAGTACGCTTCTTACTTTTCAACGTATCCTTCTGTGCTTTCGCCATATTCTTTTATTGGAAACACAACATGTACTGTGAATCAGGGAGTTACACATTATTTGCCCTGTTTGAGTATCTAGTGGTCTTCTCCAATATGGCCTTCCATCTCACAGCAGTGTGGGACTTTAAGAGCCGAGAGGTCATGGTCATCTCATCCTCCGAAGATAAAGACTTCTGACTAGAAACTCAAGGACTAAGTGCTAAATGTACAACCACTCAAACCCCTGATGTTAACAGCCTTGACCCTGCACAAGGAGAAGAGTGGGGTGAAGGCCTTTTCCATATTTCCATGATGACGATTCCGAAGTCCTTTGAGGGTGTAGATGTCAGACAAGTTTGAAGAAAAGATATGCACATGTGTTACTGTATGGTCAATTCAATGAGCTATAAGTGCATTTTTGTGCCTCATTGTCTCATTCATCGAGTACACTATTTTATGTAATGTGAAATTTCAACTTTTGTACAATGCACAAAATAATGTGGTCGTACTGTATTTGCAAAAGTAAAGTGACAGTCCTTCAAATATGCATAGCCTTTATGGTTATAATTTTAGGGAATGAAAATAGTGGAAAGCAGGGTGTTCATGTGGTCTTTCCTTTGAGCATTCACAACTTTAATACTGTCAACACAGAAACAATAGCAAAGTGACACAGTGAAGCTATTTTACACCATTCCCAAAAACATTTGCCACCCAGGGCCACTCTACCATCACTCTTCAGATGCAGTGTTACGATATCTGTTGTTAAAAGACTTTGTCATTAGCCATACTTAtatttcaattttcattttcatatttcaaCAAATATCTATGCTTTTAATAATTGTTTGATtgttaaatgttgaaatgtATGCACCagttctcaaatgtgaatactCTGTACTACATGTGACCTCAATGGCCATTGTTAATCTGATGCAGGATTACACATCGCTTACCTAACTGTGACTCAAAAGTTAATGCTGCTGGATAAAAACCTAGTAGCCATGTACAAAGGAA

Function

NR:

description
PREDICTED: post-GPI attachment to proteins factor 2-like isoform X1

GO: NA

KEGG:

id description
K23552 PGAP2; post-GPI attachment to proteins factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039820919.1 False 1840 mRNA 0.39 5 38767545 38770068
XM_039820926.1 True 2124 mRNA 0.41 6 38767545 38770608

Neighbor

gene id symbol gene type direction distance location
stim1a stim1,LOC101465674,LOC102214188,LOC103353587 coding downstream 2507 38736165 ~ 38765038 (-)
rrp8 NA coding downstream 891390 37869532 ~ 37876155 (-)
LOC120551759 NA coding downstream 981667 37784943 ~ 37785878 (-)
LOC120551756 NA coding downstream 990939 37775674 ~ 37776606 (-)
LOC120548891 NA coding downstream 995009 37771547 ~ 37772536 (-)
LOC120554189 LOC103353607,LOC108235982,LOC106521500 coding upstream 10694 38781302 ~ 38782231 (-)
LOC120551793 NA coding upstream 67591 38838199 ~ 38839088 (-)
LOC120549135 NA coding upstream 112890 38883498 ~ 38885224 (-)
LOC120546317 NA coding upstream 209737 38980345 ~ 38997012 (-)
hmgb1b hmgb1,LOC105030464,LOC106521520,LOC103377997,LOC106612439 coding upstream 237831 39008439 ~ 39011326 (-)
G22520 NA non-coding downstream 414959 38352382 ~ 38352586 (-)
LOC120575673 NA non-coding downstream 416225 38303806 ~ 38351320 (-)
G22462 NA non-coding downstream 857427 37906362 ~ 37910118 (-)
G22458 NA non-coding downstream 863864 37902256 ~ 37903681 (-)
G22371 NA non-coding downstream 1099601 37667639 ~ 37667944 (-)
G22563 NA non-coding upstream 43171 38813779 ~ 38814207 (-)
G22575 NA non-coding upstream 114619 38885227 ~ 38885642 (-)
G22579 NA non-coding upstream 135628 38906236 ~ 38906709 (-)
G22591 NA non-coding upstream 182406 38953014 ~ 38953369 (-)
G22629 NA non-coding upstream 272481 39043089 ~ 39043577 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 31722 38727508 ~ 38735823 (-)
robo2 NA other downstream 118946 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 1021263 37732841 ~ 37746282 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 1069406 37692438 ~ 37698139 (-)
si:ch211-105f12.2 LOC103368707,LOC107379995,LOC102080198,LOC107090084 other downstream 1111750 37651459 ~ 37655795 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other upstream 1172963 39943571 ~ 40033156 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 1519397 40290005 ~ 40470176 (-)
cntn5 NA other upstream 3259065 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 4466074 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 4930363 43700971 ~ 43716741 (-)

Expression


Co-expression Network