LOC120572075


Basic Information

Item Value
gene id LOC120572075
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6512177 ~ 6516516 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821263.1
tgcTAAAATGGCTCATAACAATACAACTTCAGAATGAATACCAAAACTcatgaaaatacaaaacagtTAAGAAAAGGGGATGAAATTACTTCAACTCTACTGCTGTTAGAGTTCATAGTGTTGGAATATGACTTTATATTTAGATTTATATTATTCATGAATTTCCAATCTAATTTTCCAACACCTGTAAAGGTTGACTCCAGCCCATTCTCCTTCCCTGGGAGTCAATCTATCTTAACAGATAGCCTGAAATAAGAGACTGTCAGAGAATATATTTTACAAAGAACTTAAGTTTCCAGTTTGTATAAATAATCATGTCATTCTGTCAATGTCTTTTCATTTATGGAAGTGTTACAGTTAAGGAAGGCTGTGTTAACATGTGttacatatttttcttttttttataagtttacatttgggccaccaaattTTGGGGCTTGGTGGCAAATGGGGCCAGTGCCTAAAGATATTAGCGTCTATATCTGGGCACCCTTCAGTCAGTGTCTATATGCGCTTTAAACTGTAAACCTTTCTGCTCATATTACATGCTCAGAGCAAGTTATCCAGAAGTAAGAGTGACAAAGTCCACGTAAGGAGGAGgacggggtggtggatgggtcaaacatcaCAGGAGTTTCACCTAGAAGACAGCTTTTCGTGGCCCGTGTCCTGTGCATCACTTTCCCACACtcaatcttttcctaaatctaACTTAGTGGTtgtacatttagttttgtttgaaTTCACATTAACAACGTGTTCCCTGTGTTTAAAACAGCAACCGTAGCAGTGAGTGTGTAAGACCTGGAGCCGCTTGCACCAACTGGTCTTTACTAAGCCTGGTCCTTTCTGCTAAGTTAGTGTTTGTTGAGACCAGTCTTTAGAATTGACTTCACCTCGATTGCACCAACCAAACTTAAGTGATGCGTGATCATGGGAATGACAACAGAACTATGGCTTTTTGACTAGCAACGTGCGCTGCTAGGATACGTTATAAACGATTTCCCTCTGTTTTGTAAAGTTGTAGCAATTTCAATGGAGGAtcaaagaataagaaaaagcaATTTCACTGACATTGAGAGAAGAAAATGTATAGAGCTGTACAGTCAGAACAGACATATGTTGACTGCCAAGCAGTCCAacattataacacacaaaaacaaacaacatggaGACAGATAATGGAGGCCATCAACGATTGCTCTGACCCAGGTAGACTTCATACAGAGAGCGatatatgtgaaaaaagtggaaagaccTCCTGAGCAGAGCAAAGAAAGACCAGTCCTCAAAAAATAACATCCAACTGGCGGGGGTACTCCCCCTTAGACATCAGTTTCTAGTGACATAATTGTGGATGTATTTGGAGAGGACTCACAGCTTTTACTGGTTTAGTCGGTGCAGAAAGTGGCGGTACCGACCTGGAAGAGAATGCTGTCTCTCCAGGTCGTCCATACAGGCAGCGAGAGTGTGAATTGGGAAGGTGTGTAGAAACGTGCTTAGATTTGGACTTTACATCTGCTACTGACTAGGTGTAAGAATTACGCCCGCTCTTAGCGAGAAGAGAGCTTAAGCCAGGATGGCGCGACTGGCGTAACTATTAGGTCAGACTTAGAACGCTGAGTTAAAACCTACTTAGCTTAAGACCAGTCTTAAGCCCTGTTTGTGCAACCGGCTCCTTGCCAGGCATCTCTGACTCTGTGTAACTCAAGGCCTGATCTAGGTGTTTGGTTCCAGTAATGGCTCTGTGTATACTGGTAGCCTTACTATTGTATATTTAGTTGTTTTTGTCAACACTCTTCTCTAGCTCATGCTCACCATGCAAAAGCCTTTGCTCTTGCCTGCCATTTGGGGAGCAATACATTTCCTGAATTGATTCTGATTCAAAAGGTCATAATTTGATAACATTTCTGATTTGATATCAATAAGGTAGGAGTTTTAGCGATTGGAGAGTTGCTTAATTTAACCCAGCCATATTTCAGAGCCGGAGCTATGCCTAGGTGAGCCCAACTATATCACTGTAGTTCCATTTCCCCCACTAACTCTGGCTCCTTACCAGAGAGGTGACATTGCACCTCCCTTGAACCAGATTTTGTTGTCTGGGGTAAGCACACCCGGGCCCCATGTTCGCCTGTTACCTGGCGAACCGGCCCCCTTGGGTTGGTGACTTTTGGAGGGTTCACTGAATGTGACAAATAATAGGATGGTATGGGCCCTGATGATAAAGTAGGACCGGCctgtttgtttctactgttCTGAAAAGGTATAAAGCAGCAGATGTTACTGAAGCTGACAGAAGTGACTGCAGCACTCTGCAGCAcaacaggtaacacacactgaAGTGGGTGGGATGTGTTCATGTTTCATTTACAGATATAAACTGAAGGGTGatgtgaatgtgaatgtttGTCAGGTTTTTTATAATTTCTGCTCAGTTGTATAAATCTTTTCGCCTTGAAGAATGTTAAATTCAACTTTATCATATTTCATTCTTGGAGCTTATGTGTATGTAGGAACTTTgagatatttttatttcataataacTGCAATATTATACATTCTAATTGTTATTACCAACACATCTCTGATTGTGGTTATCTGTATGAACAGAAGCTTACATGAACCTATGTACCTTTTTCTGTGCAGCCTGTTTGTAAATGAACTGTATGGTAGTACAGGGTTGTTTCCATTCCTTCTGGTTCAGATCCTCTCAGACATTCACACTGTTTCTGCTCCcttctgtttcctgcagattttctgtttaTATACATATGCAAATGTAGAGTTTTGTAACTTAGCCGCCATGGCTTATGACAGATACCTTGCTATCTGTTATCCTCTACAATATAACACTTGTATGACAACTAACAATGTGTTCACCTTTATTGTGGTAATATGGTTATACTCTTTTGTGAAATGCTTAATTACTTTATCCTTAAACATCCGTTTGACAATGTGTGGAAATGTCATAAACAGTTTGGTTTGCAGAAACTACCTAATTGTTAAGTTGGCGTGCTCTGACATTCAAGTGAATAACATCAATGGATTGATTGGTGTTGTTCTCTCCATTTTTGTCCCTCTGCTTCCAATCCTTTTCTCTTACATGAAAATCCTCAAAATTTGTTTTTCTGGTTCCAAACAGACGAGACAAAAAGCTGTCAGCACCTGCACACCTCACCTCGCTTCACTCCTAAACTTTTCCTTTGGGTGTTTATTTGAAATACTTCAGAGTAGATTTGATATGACCAGTGTACCCAGTGTGCTGCTTATCATTCTGTCACTGTATTTTGTCATCATACAGCCACTTTTCAATCCTGTCATGTATGGAATGCAAATGTCCAAAATAcgaaatacatgtaaaaaatctCTTCTGTTGTAAAATGTTGACTTGTCACAGACATAAGATGTTGACATAAATTAGTTCAATATgtcaattatttttaatatcttGCATTGAAATGTTTGctcattttagaaaaaaaattataaatgtaAGCATTCCTGACATTGTCTTATTGAGTGAAAAAAATCTCATAATACTGTGACCTGCACTGGCATACAGGTAAGCCCAACTATTGTATTTTTACAGTAGTTGTTATTGGCAACATTCATTTCTAGCACAAGCTCAGCATGCAAAAGGAGGAGTTGCGGTTTTCCCTGACAACACTAGTCCAATGGACACGCAAACCCCCAACAACGACAACATTATTATTCATGGAGGGGCCTTACATATCCAGGGTGAAAAACTTGTACCCTCCGGATGACAGTGGTGTAAATCCGTTAGATCTTTTAAAtccaaattgaattgaacaaagATTCTAAATAACTTGGTACCTGTCAGTGCAGCACTTGGCCTTGTTTTAATGTTGACCATAAGACCCATGTACTGAACCATCGCAGACTTCAGATGTCATTTGTGTAGCAGCGCAAGTTCTGAAGAGCAGACTGGCACAAGGGCTCCAATTTTTGTTTGACGAATAGGACACCATATCGTGAAATCCACTGTTAAAAGCATATCAAGTTCAACGTTTTTTGTCATATGCAAAGTAAGGAAACATGTTTCCCTGTACAATGAAATTCCTCCTTTGCCGTCCAcagaagacacacaaacaatgtAAAATCTACAATATATACTGCagatatacaaaataaaacagccaGTAAGGTGTGAGGCTCATGTTTCACGTGTGCAGATGAATAATGTGTTTGTAAATAAAGGCTCATGAGAACATATTATCAATAAAGTTGTTTGGTCATATCAGATTAAATAAATCATCCCATTCATGCCTTAATAGAATACAAAACTGCAGACCATGCTTGAATGAAATAAACAGTGATTC

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821263.1 True 4340 mRNA 0.39 1 6512177 6516516

Neighbor

gene id symbol gene type direction distance location
abcg1 abcg1,LOC103475277,LOC103152983,LOC102205798 coding upstream 63849 6420513 ~ 6448328 (+)
LOC120549609 NA coding upstream 159176 6350475 ~ 6353001 (+)
LOC120545249 NA coding upstream 187767 6323484 ~ 6324410 (+)
LOC120545240 NA coding upstream 221199 6290058 ~ 6290978 (+)
LOC120545220 NA coding upstream 337667 6169219 ~ 6174510 (+)
LOC120552698 NA coding downstream 8692 6525208 ~ 6526163 (+)
LOC120572775 NA coding downstream 17953 6534469 ~ 6535401 (+)
LOC120552719 NA coding downstream 24847 6541363 ~ 6542380 (+)
LOC120545393 NA coding downstream 34174 6550690 ~ 6551630 (+)
LOC120572346 NA coding downstream 73220 6589736 ~ 6590668 (+)
G14930 NA non-coding upstream 291 6511135 ~ 6511886 (+)
G14928 NA non-coding upstream 2203 6508571 ~ 6509974 (+)
G14917 NA non-coding upstream 17527 6494388 ~ 6494650 (+)
G14908 NA non-coding upstream 35031 6476674 ~ 6477146 (+)
G14907 NA non-coding upstream 38408 6473510 ~ 6473769 (+)
G14939 NA non-coding downstream 61706 6578222 ~ 6578453 (+)
LOC120572178 NA non-coding downstream 173515 6690031 ~ 6690891 (+)
G15012 NA non-coding downstream 427806 6944322 ~ 6991913 (+)
G15021 NA non-coding downstream 461283 6977799 ~ 6978105 (+)
G15032 NA non-coding downstream 500279 7016795 ~ 7017311 (+)
spcs2 spcs2 other upstream 94668 6407985 ~ 6417509 (+)
rnf169 NA other upstream 107752 6393062 ~ 6404425 (+)
G14344 NA other upstream 983558 5510757 ~ 5528619 (+)
G14187 LOC107380983,LOC108250349,LOC108250351,LOC103477369,LOC103473932,LOC107835021,LOC106936810,LOC102294474,LOC102776571,LOC108229490,LOC103360213,LOC107834023,LOC103368570,LOC102214284,LOC102800009,LOC101480046,LOC101470105,LOC102792843 other upstream 1095042 4801340 ~ 5417135 (+)
G14209 LOC102792843 other upstream 1984800 4500173 ~ 4527377 (+)
G15019 NA other downstream 456329 6972845 ~ 6989396 (+)
G15173 LOC102077075 other downstream 881585 7398101 ~ 7399141 (+)
G15234 NA other downstream 974849 7491365 ~ 7492057 (+)
rffl rffl other downstream 1290293 7806809 ~ 7853429 (+)
LOC120543808 NA other downstream 1310094 7826610 ~ 7828087 (+)

Expression


Co-expression Network