barx2 (barx2)


Basic Information

Item Value
gene id barx2
gene name barx2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22860951 ~ 22871590 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821365.1
CTGTTCATTAGCGCTCCGCGCAGCACAAGTTGAAGGCTACTGATCTTCACCGCGACACGTCAGGGAAAACTAGGCTGCATTTTTGAAAGACAAACAATGCATTATTTAAACGCCTGAGCTTTAGTAGTTGCTTTTGCCACTCGGTTAAACCTGCACAGCATTAGATATTAGTGAACAAAGCATATTGTGCAGCGAAGACAGCGCACGGCGCATAGGGACAGATCATGCACTGTCAAGCTGAGTTGAGGCTCTCCTCCCCCGGGCAGCTGAAGGCTGCCAGGCGGCGCTACAAGACTTTCATGATTGACGAGATCCTCTCCAAGGAGACTTGtgattattttgaaaaactttCTCTGTACTCGGTGTGCCCTTCGCTCATTGTGCGGCCGAAGCCTCTTCATTCATGCTCGGGCTCCTCGTCACTACGTGCCTAccctctgctctctgtgatCACGCGGCAGCCCCCCAACCTGCCCCTCCAACTCCCCCAGCCATCGTCTCCGGGCGGGGTCCACTCTCACCTGCTCTCCCCGCAGCATCTTCGAGGCTCCGAGCCCTCACCCAGCCAGACGCCCCTCAGCATCAGCAGCGAGTCGGAAACAGAGCGCAGCACGCCCCGCCTGAAGAAGCAACGCCGCAGCCGCACCATCTTCACAGAGCTGCAGCTAATGGGCCTGGAGAAAAAGTTCCAGAAGCAGAAGTACCTGTCTACACCTGATAGGTTAGACCTGGCCCAGTCACTTGGTCTCACACAGCTCCAGGTGAAAACATGGTACCAAAACAGGCGTATGAAGTGGAAAAAAATGGTGCTCAAAGGAGGTCATGAGGCCCCGACTAAGCCCAAGGGAAGACCCAAGAAGAACTCCATTCCCACCACGGAAGAAATAGAGGCTGAGGAGCGAAGAATGAGGGTGGAGGAAGAAGATATGAAAAGGAGGGTGAATGAGGAGGCAGCGCTGGCTCACGGAGAAGAGGCGTCTCAGCGTAAACCTCAAGATCTCACTTCAGAAACTCACAATCCAGCCGCAGCTATGGAGAAATCTGAGCGAGAGCCACTGCTCCTGATGCAGTCAGAGACTCACGCAGCCAGCTAAGAAAAACAACCAAAGACTGATGTCAACCTGAAAACAAATAGTGCCTCAGGATCACTGTAAAAAGCCTGTTTGGTGTTTAGAGCCATTTGCTTTAGGAATTTGACTGGAAACATATAGCTGGAATCCAATCTTTACCTAATgcagccttttttatttttgtgtgtgttagaaaacatacagtacaaagaGCTAAAAATGCATGGACACTGATTGCACTGGGAAAAAAAGGGCCTTTAAAACTGTATAAGGAGTGTTAATCTGTCAAATTCAAGCAGGTCAGTCAAGTATCACCGCATCACCTATCACCTATTGTGCATTACATCTATGAAAGATCAAACACCGCTGGCCCTCCAAGATGCCTCACATAGTGTATGTGCCAAAATATCAAGGTTTGCCTTACTGTAGTGTCTCTATGTATCTATTATAAATGACTTCACTGCCAAAAACTATAATATTAAATGGCTACAGTGCCTTGTCTGTCTCAGAGGAAAGCTTTTTAAGTGTTAATAAAATGCAagtatattttttacagtgatTATTCATTACAAGTGCCGTTTTTGGAGACAGAGTTATAAAGTTTTGAACAGTTCAGTGTTTACGTTGGAGTTCTTCTGCACAGCTTTAAGGTGCAAAAGTTTTCATTATTTGGTTGGTAAAGCTTGCATTGTTATTTTTTCAATCTGAAAAATCAATATTTCTGCCAAGCCATACACTGTATCATACTGTAGAAATGTGTATAAAGTATAAGATATATGGTCTTTCGGATATATATGTAAAACAGTATTTTTAACTGCTGTTTTATATTGGATTAAAATAGTTTGTATGTATAATGTTACTGCCTTCCCTGATCTTTTTTCTCCTTTCACGGGAGTCAGGATGACTCTGCTTTCTGCCACGAGGCCACTAAGACTGTTAAGCTGTCAGAGATTCTGAGAGGGAATAAATCATAGCCTGTGCCAAAGATGCTCAGCAAATGCTGAACATTTAAAATCTGAAAGACATTTTTAGCCTGCAGGCTTTGCATGAGTACCCCAATCAGTATGTTCGACTTGTATTAACATAACACTATCTTCAA

Function

symbol description
barx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epithelium; immature eye; pectoral fin; pectoral fin bud; and pharyngeal arch. Orthologous to human BARX2 (BARX homeobox 2).

NR:

description
PREDICTED: homeobox protein BarH-like 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09361 BARX; BarH-like homeobox

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821365.1 True 2169 mRNA 0.45 4 22860951 22871590

Neighbor

gene id symbol gene type direction distance location
LOC120551448 NA coding downstream 61939 22789044 ~ 22799012 (-)
smtla NA coding downstream 508369 22347311 ~ 22352582 (-)
fli1 fli1,LOC106612965,LOC103145351,LOC106905187 coding downstream 627172 22200134 ~ 22233779 (-)
kcnj5 kcnj5 coding downstream 681290 22151337 ~ 22179661 (-)
srpra srpra coding downstream 807351 22044181 ~ 22053600 (-)
rbm7 rbm7,LOC104959492 coding upstream 3475 22875065 ~ 22882453 (-)
LOC120546095 NA coding upstream 287706 23159296 ~ 23162078 (-)
lbhl LOC102301737,LOC102196385,LOC100690809,LOC103154600,LOC108238121,LOC106945137 coding upstream 290612 23162202 ~ 23169207 (-)
cfap45 NA coding upstream 407012 23278602 ~ 23283802 (-)
trappc4 trappc4 coding upstream 417806 23289396 ~ 23291463 (-)
G18841 NA non-coding downstream 44971 22815781 ~ 22815980 (-)
LOC120572359 NA non-coding downstream 65312 22794426 ~ 22795639 (-)
G18837 NA non-coding downstream 81174 22777736 ~ 22779777 (-)
LOC120548681 NA non-coding downstream 224541 22635577 ~ 22636410 (-)
G18810 NA non-coding downstream 427989 22432553 ~ 22432962 (-)
G18868 NA non-coding upstream 173159 23044749 ~ 23120934 (-)
G18883 NA non-coding upstream 266060 23137650 ~ 23138259 (-)
G18896 NA non-coding upstream 284351 23155941 ~ 23156504 (-)
G18905 NA non-coding upstream 303874 23175464 ~ 23175714 (-)
G18911 polr2i,rpb9 non-coding upstream 307046 23178636 ~ 23180583 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other downstream 853776 21983302 ~ 22007175 (-)
gdpd5b gdpd5,LOC103357216 other downstream 1150588 21664076 ~ 21710363 (-)
LOC120572205 NA other downstream 1245705 21610814 ~ 21615246 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 1599028 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 1763750 21094177 ~ 21097201 (-)
G18885 gramd1b other upstream 267623 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 375013 23246603 ~ 23252420 (-)
LOC120574680 NA other upstream 581957 23453547 ~ 23461044 (-)
atm atm,LOC102794456 other upstream 857898 23729488 ~ 23758826 (-)
slc33a1 slc33a1 other upstream 930925 23802515 ~ 23809452 (-)

Expression


Co-expression Network