LOC120572601


Basic Information

Item Value
gene id LOC120572601
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21608044 ~ 21610638 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821926.1
GAAATGCCCCAGAAACTGATTTAAACACAGTACCCTCGTGCTGTGTGGCAACAGAGAGTTGCTTTTCCTCTCATTAGAGTTGTGCCAATTAAGCCAAATGAGAAGCAGCTGCTCCACCTGTCAGAGTCCTCCGTATCCAAAGATGAGGAGCCACAGTACACACTGCATTTTGGTGACATTTGTTTTGTTAGCACTGCTTCTTTTGAAACGTGAAGCCCATGCTGCTTCAAAACTATTGGAAGCAGCAGTTGCTAACAATATGAGTAATGATGCGTCGATTTGCCACGATGGGTTCATGTCTGTTTACATATCAAAGGTGCAATTTGCTGGTCTTCCTTTCACCATTTATGTTCAAGATGATCACAGTGGATATTACCAAGCCATCGCTATAGCAAAACAGTGCCACTACTTTCTTGGAGGAAATGCCACCTTTATTTTCCTAACAGTTGCTTCCCACGGATGTTTTGTGAGAAGACAAAAATACACAACAAATCTGACTGTTGTCATCATGGCATTTACAGACAGGGGAAGAGTTGAAATTGTCAAGTCAATACCTCTCATCtgtgaaagaaaaatgaaagAGGTGAACAAAAATGATGATCCACTGATATCTAGAATTCTTTTCTGCAACAAGGATGGGTTCAACATTACCATCCCTCAGAATGCCACAGTCCCACCTCTGAACCTGGATGCAGTCTGGATCCCTTCCAGCCAAAGCCACAACTGTAAACCCAAAAAACGATCCAAGGAGGCCATCACTTTCAGCTTTCCATTTACTGATTGTGGCACTCAGTCTGTGGTAAATATAGCAGATGGGAGTATAACTTACTGGGTCAACATTGAGGTGAAACAACAACTGCGGAAAGGCTCTATATTTCGTGACACTCCTTTCCAttgtACTGTGCATTGTAGCTTTGCGCTAACCCAAATTACTCAACTGGGCATCGAGGTTCAGGGAGAAAAATCTGAGTACATGTCAACACTGAAGAGCGAGGGAATACTGAGGACTGAAATGAGGTTTGCCAAAGACTCCAGTTACAAGTCTTTCTATTCCTCTCGAGGTCCTCCACCAGTAACTGAGCTTGGCCAGCCTGTGTATGTGGAGGTGTTTGTTCTCAAACATGAAAACAAGGATttggtgctgctgctggaagACTGCTGGGCAACACCGACTAAAAACCCACATGACCCACAAAgatggaatctgcttgttaaaGGGTGGATTCACATGAAATTACCAGACATTTTACCAGTGTTTTATTATCCAAAAGTTGTCCCCAGTAAGGAGCTGAAATACCCCGCTCTTCATAAATGGTTTGTGGTCAAGCTGTTCTCATTTGTGAAGCCTCCAACAAATGAAAACCTGGTATATTTCCACTGTGATATAGAGATCTGTAAAGGACCAGCTTGCTTACAGTCCTGCAGCAATAGAAGGCGTAAATTAAGACGAAGCACACCAGGGCCAGGGCAGAGCATTCTTTACAGTGTAATCTCTGGTGGACCTCTTCTTTATCTACTGTAAATAACCAAGTTATATTTGGAAGCACAAAGGAGAACGGTTCAGTCAATAACTGTCTATGATtttgtaatgaaaataaatctaGTCCTTTTCAGA
>XM_039821932.1
ATGCCCCAGAAACTGATTTAAACACAGTACCCTCGTGCTGTGTGGCAACAGAGAGTTGCTTTTCCTCTCATTAGAGTTGTGCCAATTAAGCCAAATGAGAAGCAGCTGCTCCACCTGTCAGAGTCCTCCGTATCCAAAGATGAGGAGCCACAGTACACACTGCATTTTGGTGACATTTGTTTTGTTAGCACTGCTTCTTTTGAAACGTGAAGCCCATGCTGCTTCAAAACTATTGGAAGCAGCAGTTGCTAACAATATGAGTAATGATGCGTCGATTTGCCACGATGGGTTCATGTCTGTTTACATATCAAAGGTGCAATTTGCTGGTCTTCCTTTCACCATTTATGTTCAAGATGATCACAGTGGATATTACCAAGCCATCGCTATAGCAAAACAGTGCCACTACTTTCTTGGAGGAAATGCCACCTTTATTTTCCTAACAGTTGCTTCCCACGGATGTTTTGTGAGAAGACAAAAATACACAACAAATCTGACTGTTGTCATCATGGCATTTACAGACAGGGGAAGAGTTGAAATTGTCAAGTCAATACCTCTCATCtgtgaaagaaaaatgaaagAGGTGAACAAAAATGATGATCCACTGATATCTAGAATTCTTTTCTGCAACAAGGATGGGTTCAACATTACCATCCCTCAGAATGCCACAGTCCCACCTCTGAACCTGGATGCAGTCTGGATCCCTTCCAGCCAAAGCCACAACTGTAAACCCAAAAAACGATCCAAGGAGGCCATCACTTTCAGCTTTCCATTTACTGATTGTGGCACTCAGTCTGTGATAGCAGATGGGAGTATAACTTACTGGGTCAACATTGAGGTGAAACAACAACTGCGGAAAGGCTCTATATTTCGTGACACTCCTTTCCAttgtACTGTGCATTGTAGCTTTGCGCTAACCCAAATTACTCAACTGGGCATCGAGGTTCAGGGAGAAAAATCTGAGTACATGTCAACACTGAAGAGCGAGGGAATACTGAGGACTGAAATGAGGTTTGCCAAAGACTCCAGTTACAAGTCTTTCTATTCCTCTCGAGGTCCTCCACCAGTAACTGAGCTTGGCCAGCCTGTGTATGTGGAGGTGTTTGTTCTCAAACATGAAAACAAGGATttggtgctgctgctggaagACTGCTGGGCAACACCGACTAAAAACCCACATGACCCACAAAgatggaatctgcttgttaaaGGGTGGATTCACATGAAATTACCAGACATTTTACCAGTGTTTTATTATCCAAAAGTTGTCCCCAGTAAGGAGCTGAAATACCCCGCTCTTCATAAATGGTTTGTGGTCAAGCTGTTCTCATTTGTGAAGCCTCCAACAAATGAAAACCTGGTATATTTCCACTGTGATATAGAGATCTGTAAAGGACCAGCTTGCTTACAGTCCTGCAGCAATAGAAGGCGTAAATTAAGACGAAGCACACCAGGGCCAGGGCAGAGCATTCTTTACAGTGTAATCTCTGGTGGACCTCTTCTTTATCTACTGTAAATAACCAAGTTATATTTGGAAGCACAAAGGAGAACGGTTCAGTCAATAACTGTCTATGATtttgtaatgaaaataaatctaGTCCTTTTCAGA
>XM_039821940.1
TGCCCCAGAAACTGATTTAAACACAGTACCCTCGTGCTGTGTGGCAACAGAGAGTTGCTTTTCCTCTCATTAGAGTTGTGCCAATTAAGCCAAATGAGAAGCAGCTGCTCCACCTGTCAGAGTCCTCCGTATCCAAAGATGAGGAGCCACAGTACACACTGCATTTTGGTGACATTTGTTTTGTTAGCACTGCTTCTTTTGAAACGTGAAGCCCATGCTGCTTCAAAACTATTGGAAGCAGCAGTTGCTAACAATATGAGTAATGATGCGTCGATTTGCCACGATGGGTTCATGTCTGTTTACATATCAAAGGTGCAATTTGCTGGTCTTCCTTTCACCATTTATGTTCAAGATGATCACAGTGGATATTACCAAGCCATCGCTATAGCAAAACAGTGCCACTACTTTCTTGGAGGAAATGCCACCTTTATTTTCCTAACAGTTGCTTCCCACGGATGTTTTGTGAGAAGACAAAAATACACAACAAATCTGACTGTTGTCATCATGGCATTTACAGACAGGGGAAGAGTTGAAATTGTCAAGTCAATACCTCTCATCtgtgaaagaaaaatgaaagAGGTGAACAAAAATGATGATCCACTGATATCTAGAATTCTTTTCTGCAACAAGGATGGGTTCAACATTACCATCCCTCAGAATGCCACAGTCCCACCTCTGAACCTGGATGCAGTCTGGATCCCTTCCAGCCAAAGCCACAACTGTAAACCCAAAAAACGATCCAAGGAGGCCATCACTTTCAGCTTTCCATTTACTGATTGTGGCACTCAGTCTGTGGTAAATATAGCAGATGGGAGTATAACTTACTGGGTCAACATTGAGGTGAAACAACAACTGCGGAAAGGCTCTATATTTCGTGACACTCCTTTCCAttgtACTGTGCATTGTAGCTTTGCGCTAACCCAAATTACTCAACTGGGCATCGAGGTTCAGGGAGAAAAATCTGAGTACATGTCAACACTGAAGAGCGAGGGAATACTGAGGACTGAAATGAGGTTTGCCAAAGACTCCAGTTACAAGTCTTTCTATTCCTCTCGAGGTCCTCCACCAGTAACTGAGCTTGGCCAGCCTGTGTATGTGGAGGTGTTTGTTCTCAAACATGAAAACAAGGATttggtgctgctgctggaagACTGCTGGGCAACACCGACTAAAAACCCACATGACCCACAAAgatggaatctgcttgttaaaGGATGTCCTTACAGTGGTGATAGGCACAGAACTGTTGTGTTACCAGTTGTCCCCAGTAAGGAGCTGAAATACCCCGCTCTTCATAAATGGTTTGTGGTCAAGCTGTTCTCATTTGTGAAGCCTCCAACAAATGAAAACCTGGTATATTTCCACTGTGATATAGAGATCTGTAAAGGACCAGCTTGCTTACAGTCCTGCAGCAATAGAAGGCGTAAATTAAGACGAAGCACACCAGGGCCAGGGCAGAGCATTCTTTACAGTGTAATCTCTGGTGGACCTCTTCTTTATCTACTGTAAATAACCAAGTTATATTTGGAAGCACAAAGGAGAACGGTTCAGTCAATAACTGTCTATGATtttgtaatgaaaataaatctaGTCCTTTTCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821926.1 True 1615 mRNA 0.43 10 21608044 21610638
XM_039821932.1 False 1606 mRNA 0.43 10 21608044 21610635
XM_039821940.1 False 1602 mRNA 0.43 10 21608044 21610634

Neighbor

gene id symbol gene type direction distance location
dhx40 dhx40 coding downstream 304 21600529 ~ 21607740 (-)
akt2 akt2,LOC100707971 coding downstream 8045 21580379 ~ 21599999 (-)
LOC120553405 cntd2 coding downstream 30183 21573329 ~ 21577861 (-)
si:ch211-132b12.7 NA coding downstream 35364 21565551 ~ 21572680 (-)
LOC120573840 LOC101479958 coding downstream 79283 21516913 ~ 21528761 (-)
gucy2f LOC103357218,LOC100708779 coding upstream 110351 21720989 ~ 21732143 (-)
mmp13b mmp13 coding upstream 143755 21754393 ~ 21758179 (-)
siae NA coding upstream 176902 21787540 ~ 21794944 (-)
srpra srpra coding upstream 433543 22044181 ~ 22053600 (-)
kcnj5 kcnj5 coding upstream 540699 22151337 ~ 22179661 (-)
G18591 NA non-coding downstream 24641 21527455 ~ 21583403 (-)
LOC120572042 NA non-coding downstream 75289 21529997 ~ 21532755 (-)
G18492 NA non-coding downstream 196845 21410908 ~ 21411199 (-)
G18429 NA non-coding downstream 492050 21113372 ~ 21115994 (-)
LOC120575525 NA non-coding downstream 521169 21085093 ~ 21086875 (-)
G18626 NA non-coding upstream 22342 21632980 ~ 21695722 (-)
G18631 samsn1,LOC102311369,LOC107374247 non-coding upstream 41065 21651703 ~ 21652866 (-)
G18669 NA non-coding upstream 209351 21819989 ~ 21878764 (-)
G18758 NA non-coding upstream 537401 22148039 ~ 22148297 (-)
G18770 NA non-coding upstream 577625 22188263 ~ 22188687 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 346121 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 510843 21094177 ~ 21097201 (-)
LOC120547993 NA other downstream 1466506 20137072 ~ 20141538 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 1797914 19800751 ~ 19810130 (-)
fbxo46 fbxo46,LOC102786997 other downstream 1890737 19701227 ~ 19717307 (-)
LOC120572205 NA other upstream 176 21610814 ~ 21615246 (-)
gdpd5b gdpd5,LOC103357216 other upstream 53438 21664076 ~ 21710363 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other upstream 372664 21983302 ~ 22007175 (-)
G18885 gramd1b other upstream 1528575 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 1635965 23246603 ~ 23252420 (-)

Expression


Co-expression Network