alkbh8 (alkbh8)


Basic Information

Item Value
gene id alkbh8
gene name alkbh8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 27850024 ~ 27864523 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822007.1
ATGTGTTTGGTGCTTGTAGCACCCGGACAAAATAAAATGACGTACCATGGATGCTAGTGTGAGAAACAACGTGAAAGCCGTCAGGAGGAGTAAGGAGGACAAGAAAGTTCTTCGTAAACAGTTAAAAGCCAGTCACACTTTGCTGAAACATGAAGGCATTAGTACAGCACCGCAGCCTACCAagAGTTTGGTGGTGGCTAATGGTGGCCTGGGGAACGGCGTTAGTCGAGAGGAGCTGTCTGCAGCGCTGAATGAGATGGGAGAGCTGGAGACACTAATCATGCATCCTCACAAGCCCTATGCTTTTGTCACATACAGATCTGAAGAGAGCGCTCGGAAAGCCCACATCCACCTCAATGGGAAAAAGCTTCAATGTGGAGAGAACAGTGTAACACTCTACCTAAGTTATGTTGACTCAGTAACCTGTGAAAATGAGGGATCTGTTCCTTTGCCAGAGGGATTAGTCTTGGTGGAGAATTTTGTGTCTCTGGAGGATGAGGCTCTGCTGCTAGCTGCCATTGACTGGTCGTCTACTAATGAGGATGTCACTGCTCAAAAAGCTCTGAAGCATCGAAGAGTCAAACATTATGGCTTTGAATTTCGCTACGACAacaacaatgtggataaggaCAAGCCATTAGCTGCAGgtaTTCCTCAGGAGTGTCTACCAGTTCTGGAGCAGTGTGTAAAGAACAAACACATTGATATCATGCCAGACCAGTTGACTGTCAACCAGTATGAGTCTGGACAGGGCATTCCTCCTCACGTGGACACTCACTCTGCCTTTGAGGACACCATTCTGTCACTAAGCCTGGGGGCAAAGACGGTGATGGAGTTCCGTCATCCCGATGGTCGTATAGTTGCTGTGGTGTTGCCAGGACGCAGCCTCCTGGTGATGAAGGGAGAGAGCAGATACCTCTGGACACATGGGATAACTCCTCGAAAGTTTGACATGGTGCCAGTCTGCGACCCACAATCCCCTGCTCATACGCCTGACCTCGGGACTCACAGCAATCTCACTTTGAACAAGAGGGGCACCCGCACTTCTTTCACTTTCCGCAAGATTAGACATGAACCCTGCCGATGTGCCTTCCCCTCTGCCTGTGATAGTCAGGTAGCTCCCTCAGCACCCTCTCCGCCGTCTCCTCCCTCACTACCCTGTTGCCATGCCGACGCAGCCCTTCTGGAGGAGGAGTATGTGCACCGGGTGTACGACGCCATCGCCTCCCACTTCAGTGGCACTCGCCACTCCCCCTGGCCTCGTGTTTGCCACTTCCTGTCATCGCTCCCACCTGGCAGCGTGCTGGCCGATGTGGGCTGTGGAAATGGCAAATACCTGGGTGTCAACCTGGACGTGATTGCAgTTGGTTGTGACCGTAGCGTTGCTCTTGTCCAAATCTGTGCAGAGAGGGGTTTCCAGGCGTTTGTATCCGATGCTCTCAGTGTCCCTCTGCGAACAGCCTCCTGTGATGCCTGCATCTCTATAGCTGTCATACACCACTTCtccacacagGAGCGTCGGCTGGCAGCAGTGAAGGAGCTAGTGAGACTTCTGAAGCCCGGAGGTCGAGCGCTCATCTACGTTTGGGCTTTTGAACAAGAGTACAACCAGCAGAGGTCCAAGTACCTCAAAGACCAGAACAAAGAGCATCCTGAGAACCCCAGCGCCACTGAAAACACACCAGAAGACAGCCAGGAACCTCACGAGAATTTGAGTATCCATAGCAGCAGACGTTCAGAAGACAACTACAGGCCTGTAGAAAACATGCAAGATGTGACTGATGGCAAACTTAGTGTGCACACCAACCGCACAGCATTTAACACGCAGGACCTTTTGGTTCCCTGGCATctgaaagaggggaaaaaacgaGTCGAGGAAAAATCAGGAGAAGGTGGGAAGAAGGATAGAAGGAAAGAGATGTCCAAAAAGACTTCAGGTAACACTTGCTCAGCCTGTAGTTTGAGTTCCATAGCCAAATTAGACAGTAACCCTGATCCCAGTCCAGGCTTTGACTCCAACATGTCTTCTGGATCACATCTTGACACCAGTGATGTCTCTAAACCCAGTCCAAGTTGCGACACCAGTCAGACCTCCAGTTCTACTCTAAAGTTGGAGTCGGAGAGCTGCCCGGCGCCCGTTTATCACCGCTATTACCACGTgttccagcagggggagctggAACAGCTGTGTGGTCAGGAGGCTGGAGTCCATGTGCAGAGCAGCTACCATGACCAGGGAAACTGGTGTGTTATATTAGAGAAGGACTTGGGGAGATGAACTGACACACTCACAATTTATAATAATttagctacaaatacacatttgaACAAGAGAGTTAATGCAATCtaaccaaatattaaattaaagggtcctttatttgtttaaatgcaGAAAAGTGAACAGACAAGTGTcatgaaataaatgtaataacttCACAAATTGCC

Function

symbol description
alkbh8 Predicted to enable tRNA binding activity. Predicted to be involved in tRNA wobble uridine modification. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ALKBH8 (alkB homolog 8, tRNA methyltransferase).

NR:

description
alkylated DNA repair protein alkB homolog 8 isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10770 ALKBH8, TRM9; alkylated DNA repair protein alkB homolog 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822007.1 True 2445 mRNA 0.50 12 27850024 27864523

Neighbor

gene id symbol gene type direction distance location
gucy1a2 gucy1a2,LOC102775648 coding downstream 29911 27771968 ~ 27820113 (-)
msantd4 msantd4 coding downstream 118520 27725434 ~ 27731504 (-)
pdgfd pdgfd coding downstream 369958 27407761 ~ 27480066 (-)
LOC120553392 NA coding downstream 593028 27247233 ~ 27256996 (-)
fzd4 fzd4 coding downstream 679646 27160443 ~ 27170378 (-)
kbtbd3 kbtbd3 coding upstream 7892 27872415 ~ 27880814 (-)
p2ry2.1 p2ry2 coding upstream 176926 28041449 ~ 28046085 (-)
trnam-cau_1 NA coding upstream 201802 28066325 ~ 28066397 (-)
yif1b yif1b coding upstream 277020 28141543 ~ 28147451 (-)
trnar-acg NA coding upstream 286057 28150580 ~ 28150652 (-)
G20012 NA non-coding downstream 78127 27769501 ~ 27771897 (-)
G19967 NA non-coding downstream 104450 27745285 ~ 27745574 (-)
G19963 NA non-coding downstream 106559 27743215 ~ 27743465 (-)
G19916 NA non-coding downstream 310466 27510793 ~ 27539558 (-)
G19915 NA non-coding downstream 363547 27486185 ~ 27486477 (-)
G20019 NA non-coding upstream 4071 27868594 ~ 27913558 (-)
G20049 NA non-coding upstream 119746 27984269 ~ 28006577 (-)
G20056 NA non-coding upstream 142518 28007041 ~ 28007474 (-)
G20090 NA non-coding upstream 245239 28109762 ~ 28114304 (-)
G20091 NA non-coding upstream 251377 28115900 ~ 28116767 (-)
cwf19l2 cwf19l2 other downstream 2476 27824605 ~ 27847548 (-)
G19840 NA other downstream 760960 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 1380128 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 1404089 26434281 ~ 26445935 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other downstream 1515305 26307064 ~ 26334719 (-)
G20417 scarf1 other upstream 1582647 29447170 ~ 29448655 (-)
im:7138535 NA other upstream 2102906 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 2223212 30087735 ~ 30091711 (-)
cbl cbl other upstream 2290370 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 2704350 30568873 ~ 30618434 (-)

Expression


Co-expression Network