nova2 (LOC104927796,LOC101481231,LOC103377877,LOC107097063,LOC103138289,LOC106535085,LOC107379798,LOC100701682,LOC102216529)


Basic Information

Item Value
gene id nova2
gene name LOC104927796,LOC101481231,LOC103377877,LOC107097063,LOC103138289,LOC106535085,LOC107379798,LOC100701682,LOC102216529
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13959770 ~ 14044832 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822634.1
CATCGCGAGGCCCTGTGACGTCGGCCGCTCCCCTGCGCTCCCTCTAGCAGCCAGTCAGAGAAGGGATGCTCTGAACGCAAGACTGCAGCATCTTCACCGAGAGAACgagcagggaaaaaaaaaacacgtctctttctctgtgtgtttttccaACTCCACGACTCCGGACCCTCTTCACCCACCCCGTCACCCCTGGGTGTCTTCATGATCGGAGCCAGAACAGGATAAGAAGAAAGAAATTATACTTATATAATAGCCTACAAATAACGCAtcggatttttatttttttttttattattgcttcaacgaccttttttctttcttcggTTGATATCGCCTCTTTGTCCTTCggtattgttattttattttatttgttgttccGTTTCGCTGGCTGTTGCAGAGGAGCGCCACCATCCCTGCCATCCTGACATGAGTACGCTCTTTTATCTGGTTGCAGCGGAATGACACACATATCCTAGCTCTCATATCAGAAGGTTGATGGAAGATTGACGCTCCATCTGCACGTTTTCAGTAGCCTATAGACCAATCTCCATCTGCAGAGGTttcggaatttttttttttttccgctcTCTGACTCGCTCATCCGCCACTCCAgcgtttcttttctttctgtccctGCGCAGCATCTCTGTACGCACGGCGCACTACGGAGAAACGCGCAGCTAACCTTCTCCGTCCGTAAGAAACAGGCGTATTTTTCTAATTCCCCAAATCGATTTTCGCCTTCTCCGAGGACTCATCTGTACGGCTACGCtgcgtgaaaaaaaaaaaaaaaagaaaagacgaGAAAAAGGGGGGATTTAAAACGCTAACGCAGCCCAAGCATCCAAGAGCAAGCTCGAAAATGATGGCCGGCGGAGCAGTACAGCAAAACGGGATTTTTTCAAATCCTCACCATCACAATCAACAACCACACATGGAGTCCGATCCCCCGGACTCACGTAAAAGACCCCTGGAGACTCCGACGGAGGCCAGCAGCACCAAACGCACAAACACAGGAGtgGCCTTCCTGCAGCCCCTATTTGAAACTGAAGGCATTGTATTCCCTCACCAAGAAACTGAGACTCATGAGGAAGGCGAGTACTTCCTGAAGGTTTTGATTCCCAGCTATGCGGCGGGTTCTATCATCGGTAAGGGAGGTCAGACCATCGTCCAGCTGCAGAAAGAGACCGGAGCCACCATCAAACTGTCCAAATCCAAAGACTTCTATCCCGggacGACAGAGCGGGTGTGTCTGATCCAGGGGACGGTGGAGGCGCTGAACGGTGTCCATGACTTCATTGCTGAGAAGGTGAGGGAGATGCCTCAGAGCACCCAGAAGACAGAGCCTGTCAGCATCCTGCAGCCACAGACCACCGTCAACCCCGACCGCGTCAAACAGGCCAAGCTGATTGTCCCCAACAGCACGGCGGGGCTGATCATCGGTAAAGGTGGAGCCACAGTTAAGGCGGTGATGGAGCAGTCCGGGGCGTGGGTCCAGCTATCCCAAAAGCCCGAGGGCATCAACCTGCAGGAACGCGTCGTCACCATCAGCGGGGAGCCAGAGCAGAACCGCAAGGCCGTGGAGATCATTGTCCAGAAGATCCAGGAGGATCCGCAGAGCTCTTCCTGCCTCAACATCTCCTACTCCAACATCACAGGACCCGTCGCCAACTCCAACCCCACTGGCTCCCCATACGCCAACTCCACCGAGGTAATGCCGTCCGCGGCAGCCGCTGCAGCAGCCACGGCTTCCTCTCTGCTCGGCCAGGCCAGCCTGGCTGGAGTCGGGGCCTTCCCGACCACCATGTCCAGCCTCTCAGGCAACGACCTGCTGGCCATCACCTCcgccctcaacaccctggccagCTACGGCTACAACACCAACTCCCTGGGCCTGGGGCTGAATCCCGCCGCAGCCTCAGGGGTGTTAGCAGCTGTGGCAGCTAACGCTAACCCGGCAGCAGCCGCAGCAGCTAATTTGTTAGCATCCTACGCCAGCGATGCATCCACCAGCGCAGGTCACCCAGCGGCAGGTCTCGGAGGCTTCTCCCTGGGATCCCTGGCTGCCGCTACAGGGGCCACCAATGGCTACTTAAGCGCCGCATCGCCCCTGGTGGCGTCATCTCTACTGGCCACGGAGAAGCTAGCAGAAGGAGCAAAGGAAGTGGTCGAGATCGCCGTGCCAGAAAACCTGGTGGGAGCCATCTTAGGGAAAGGAGGGAAGACGCTAGTGGAGTACCAGGAGCTGACCGGCGCCAGGATCCAGATCTCCAAGAAAGGCGAGTTCATCCCTGGAACTCGGAACAGGAAGGTGACCATCACGGGTTCCCAGGCCGCCACACAGGCTGCACAGTACCTGATCAGCCAGCGAATCACCTACGAGCAGGGGGTACGTGCCACCAACCCACAGAAGGTGGGCTAAACCTGACAGCCAATGAGAAAcgaggaggaaaagaggaaaaaaaaaaagaaagaaaagtgggGGTTTGGGGGAGGAGTATGAAAAAGTGAGAGTGAGAAtggaagaaggagaggagagcaaGAATGTCAGAAGGAATCGTCCGCGCCGTTTTCTTCTGCGTGTTTTCAGTATTctctattataaaaaaaaaagaaatttgacgCGAAGCAAAAATGTGCTGAGAAgatgaggagggagaggagcgAGTTATCACGCTGAAAAACcaagaaaaaaatgtgtaacATGTAAATAAGGTTTTATTACTTAACGTCTTGACCTTTCGGGATTTTTTATTGGTTTtgtttcattgttttgttttagtaaattaagctgtctgtctgtccgtttgTGTATTGTGTGGACAAAGCTGAATGCCATGTAGACAGGCCGACTGCCTGAGAGGGGACCGGAAgtagggggagggagggaagggcaTGGGCAcggaggggggggagggtttGCGTTTACAGGGTACAACCCTCCGCCCCCCCCAACCCCAAAATCCCTTATGGAAACAACCCttacccctccctccccctgcaGCCCACACCCCACGCCCTCCCGTagggtttttgtttttcttctagTTTTGATTTGCCCCTCGGCCCCCCGGCCCCCGCCTCCCAAAAGCCTTCCTCGCTACTTGCCTA
>XM_039822643.1
GCATCGCGAGGCCCTGTGACGTCGGCCGCTCCCCTGCGCTCCCTCTAGCAGCCAGTCAGAGAAGGGATGCTCTGAACGCAAGACTGCAGCATCTTCACCGAGAGAACgagcagggaaaaaaaaaacacgtctctttctctgtgtgtttttccaACTCCACGACTCCGGACCCTCTTCACCCACCCCGTCACCCCTGGGTGTCTTCATGATCGGAGCCAGAACAGGATAAGAAGAAAGAAATTATACTTATATAATAGCCTACAAATAACGCAtcggatttttatttttttttttattattgcttcaacgaccttttttctttcttcggTTGATATCGCCTCTTTGTCCTTCggtattgttattttattttatttgttgttccGTTTCGCTGGCTGTTGCAGAGGAGCGCCACCATCCCTGCCATCCTGACATGAGTACGCTCTTTTATCTGGTTGCAGCGGAATGACACACATATCCTAGCTCTCATATCAGAAGGTTGATGGAAGATTGACGCTCCATCTGCACGTTTTCAGTAGCCTATAGACCAATCTCCATCTGCAGAGGTttcggaatttttttttttttccgctcTCTGACTCGCTCATCCGCCACTCCAgcgtttcttttctttctgtccctGCGCAGCATCTCTGTACGCACGGCGCACTACGGAGAAACGCGCAGCTAACCTTCTCCGTCCGTAAGAAACAGGCGTATTTTTCTAATTCCCCAAATCGATTTTCGCCTTCTCCGAGGACTCATCTGTACGGCTACGCtgcgtgaaaaaaaaaaaaaaaagaaaagacgaGAAAAAGGGGGGATTTAAAACGCTAACGCAGCCCAAGCATCCAAGAGCAAGCTCGAAAATGATGGCCGGCGGAGCAGTACAGCAAAACGGGATTTTTTCAAATCCTCACCATCACAATCAACAACCACACATGGAGTCCGATCCCCCGGACTCACGTAAAAGACCCCTGGAGACTCCGACGGAGGCCAGCAGCACCAAACGCACAAACACAGGAGAGGAAGGCGAGTACTTCCTGAAGGTTTTGATTCCCAGCTATGCGGCGGGTTCTATCATCGGTAAGGGAGGTCAGACCATCGTCCAGCTGCAGAAAGAGACCGGAGCCACCATCAAACTGTCCAAATCCAAAGACTTCTATCCCGggacGACAGAGCGGGTGTGTCTGATCCAGGGGACGGTGGAGGCGCTGAACGGTGTCCATGACTTCATTGCTGAGAAGGTGAGGGAGATGCCTCAGAGCACCCAGAAGACAGAGCCTGTCAGCATCCTGCAGCCACAGACCACCGTCAACCCCGACCGCGTCAAACAGGCCAAGCTGATTGTCCCCAACAGCACGGCGGGGCTGATCATCGGTAAAGGTGGAGCCACAGTTAAGGCGGTGATGGAGCAGTCCGGGGCGTGGGTCCAGCTATCCCAAAAGCCCGAGGGCATCAACCTGCAGGAACGCGTCGTCACCATCAGCGGGGAGCCAGAGCAGAACCGCAAGGCCGTGGAGATCATTGTCCAGAAGATCCAGGAGGATCCGCAGAGCTCTTCCTGCCTCAACATCTCCTACTCCAACATCACAGGACCCGTCGCCAACTCCAACCCCACTGGCTCCCCATACGCCAACTCCACCGAGGTAATGCCGTCCGCGGCAGCCGCTGCAGCAGCCACGGCTTCCTCTCTGCTCGGCCAGGCCAGCCTGGCTGGAGTCGGGGCCTTCCCGACCACCATGTCCAGCCTCTCAGGCAACGACCTGCTGGCCATCACCTCcgccctcaacaccctggccagCTACGGCTACAACACCAACTCCCTGGGCCTGGGGCTGAATCCCGCCGCAGCCTCAGGGGTGTTAGCAGCTGTGGCAGCTAACGCTAACCCGGCAGCAGCCGCAGCAGCTAATTTGTTAGCATCCTACGCCAGCGATGCATCCACCAGCGCAGGTCACCCAGCGGCAGGTCTCGGAGGCTTCTCCCTGGGATCCCTGGCTGCCGCTACAGGGGCCACCAATGGCTACTTAAGCGCCGCATCGCCCCTGGTGGCGTCATCTCTACTGGCCACGGAGAAGCTAGCAGAAGGAGCAAAGGAAGTGGTCGAGATCGCCGTGCCAGAAAACCTGGTGGGAGCCATCTTAGGGAAAGGAGGGAAGACGCTAGTGGAGTACCAGGAGCTGACCGGCGCCAGGATCCAGATCTCCAAGAAAGGCGAGTTCATCCCTGGAACTCGGAACAGGAAGGTGACCATCACGGGTTCCCAGGCCGCCACACAGGCTGCACAGTACCTGATCAGCCAGCGAATCACCTACGAGCAGGGGGTACGTGCCACCAACCCACAGAAGGTGGGCTAAACCTGACAGCCAATGAGAAAcgaggaggaaaagaggaaaaaaaaaaagaaagaaaagtgggGGTTTGGGGGAGGAGTATGAAAAAGTGAGAGTGAGAAtggaagaaggagaggagagcaaGAATGTCAGAAGGAATCGTCCGCGCCGTTTTCTTCTGCGTGTTTTCAGTATTctctattataaaaaaaaaagaaatttgacgCGAAGCAAAAATGTGCTGAGAAgatgaggagggagaggagcgAGTTATCACGCTGAAAAACcaagaaaaaaatgtgtaacATGTAAATAAGGTTTTATTACTTAACGTCTTGACCTTTCGGGATTTTTTATTGGTTTtgtttcattgttttgttttagtaaattaagctgtctgtctgtccgtttgTGTATTGTGTGGACAAAGCTGAATGCCATGTAGACAGGCCGACTGCCTGAGAGGGGACCGGAAgtagggggagggagggaagggcaTGGGCAcggaggggggggagggtttGCGTTTACAGGGTACAACCCTCCGCCCCCCCCAACCCCAAAATCCCTTATGGAAACAACCCttacccctccctccccctgcaGCCCACACCCCACGCCCTCCCGTagggtttttgtttttcttctagTTTTGATTTGCCCCTCGGCCCCCCGGCCCCCGCCTCCCAAAAGCCTTCCTCGCTACTTGCCTA

Function

NR:

description
PREDICTED: RNA-binding protein Nova-1 isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14944 NOVA; RNA-binding protein Nova

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822634.1 True 3114 mRNA 0.53 5 13959770 14044831
XM_039822643.1 False 3046 mRNA 0.54 4 13959770 14044832

Neighbor

gene id symbol gene type direction distance location
irf2bp1 LOC103377881,LOC103364085,LOC104964332 coding downstream 47144 13908129 ~ 13912626 (-)
foxa3 LOC103364086 coding downstream 59866 13895034 ~ 13899904 (-)
pld3 pld3,LOC103364087 coding downstream 120964 13825916 ~ 13838806 (-)
prx NA coding downstream 148001 13765544 ~ 13811769 (-)
kcnk6 kcnk6,LOC104944303 coding downstream 222377 13719887 ~ 13737393 (-)
eml2 eml2 coding upstream 121281 14166113 ~ 14203307 (-)
LOC120544580 hnrnpab coding upstream 240891 14285723 ~ 14286550 (-)
tyw1 LOC101477816,LOC102209872 coding upstream 299287 14344119 ~ 14415378 (-)
LOC120553667 LOC103373161,LOC102210664,LOC102799935,LOC102292497,LOC101477532,LOC100695891,LOC101161321 coding upstream 376173 14421005 ~ 14422454 (-)
cldnj LOC103373160,LOC104952535 coding upstream 377723 14422555 ~ 14498261 (-)
G16898 NA non-coding downstream 31056 13928343 ~ 13928714 (-)
G16889 NA non-coding downstream 51740 13905904 ~ 13908030 (-)
G16888 NA non-coding downstream 53982 13905204 ~ 13905788 (-)
G16882 NA non-coding downstream 189690 13767899 ~ 13770080 (-)
G16751 NA non-coding downstream 561450 13396210 ~ 13398320 (-)
G16933 NA non-coding upstream 93894 14138726 ~ 14140433 (-)
G16942 NA non-coding upstream 169016 14213848 ~ 14215714 (-)
LOC120551036 NA non-coding upstream 475934 14520766 ~ 14523356 (-)
G17037 NA non-coding upstream 504417 14549249 ~ 14549494 (-)
G17104 NA non-coding upstream 593079 14637911 ~ 14638943 (-)
G16880 NA other downstream 136713 13755949 ~ 13823057 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other downstream 197402 13662907 ~ 13762368 (-)
G16871 blvrb other downstream 251730 13701643 ~ 13708040 (-)
sae1 sae1 other downstream 624617 13313443 ~ 13335153 (-)
ccdc9 ccdc9 other downstream 697921 13224914 ~ 13261849 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other upstream 33745 14078577 ~ 14086764 (-)
caln1 caln1,LOC103372560,LOC107097061 other upstream 203096 14247928 ~ 14322833 (-)
si:ch1073-145m9.1 LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711 other upstream 1274008 15318840 ~ 15325799 (-)
lyrm9 lyrm9 other upstream 1601809 15646641 ~ 15651047 (-)
G17287 NA other upstream 1650722 15695554 ~ 15719041 (-)

Expression


Co-expression Network