LOC120573840 (LOC101479958)



Basic Information


Item Value
gene id LOC120573840
gene name LOC101479958
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21516913 ~ 21528761 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039823706.1
TGCCTAGAGGCGTAACCTGTAGGCGTGGCTTTGGATCGACAGCATATCCCCAACCAGAAACCCTTTGCGTTGGATTTCCCTCTCCGGAAGCTTCCTGCTCAGAGTGCACTTTTTTCCCGCAAAGCAATAACTACTGAAAGTGTAACCTGTTAACCAGGCATGATGATGAACTGCTGTGGTCTGCTCACTTCCAATAAGGAAGCAGTTCCTCTGAAGAGCGTGGAGGTGGAGCTGGAGGTGAGGGACCATGTGGCTACAGTGGTCTCCACTCTGAACTATGAGAACAAGGAGGACAAACCACTGGAGGCTGTTTTTGTCTTCCCTCTGCCTGGAGATGCTGCTGTCTGTCACTTCAGTGCTAagattggacagacagagaTTGTAGCTGAGGTGAAGGAGAAACAGAAGGCTCGTGAGGAGTATGATGATGCTTTGAGCTCTGGTCAGCAGGCCTTCCTGTTGGAGGAGAGTGATCAGAGTCCAGATATATTCTCTCTGAGTGTGGGCAGTCTGCGTCCAGGAGAGAGCGCCTCCATCAGGCTGGAGTACGTCACTGAGCTGGCTGTGCAGGCTGATGAAGGGCTGAGATTTTGTCTGCCTGCTGTGCTCAACCCTCGCTACCAACCTCAGGGGAGTGGAGGTAGTGGAGGTGGCAACGTTCAGATGACCTCTGTTCCAGCCTCTATGGTGCCCTacagtctgtctttctctgcccGAGTGTCCTCTCCTCATCCAGTCTCTAAAGTAGAGTCCAACTGTCCCCTGGACGCTCTCCAGTACTTCAACACAGAGCAAACCCAGGCTACGGTCAAATTGGCTGCAGGACACAAGTTTGACAGAGATGTTGAACTGCTGATTTATTACAAAGATGCCCACCAGCCCACTGCTGTGGTGGAGACAGGACAGACCTCTGCCAAGCCTGGCTCTCTGATGGGTGATCCAGTGGTGATGCTGAGCCTGTACCCTGAGTTCCCCCAGGCTGTGATGTCTTTAGTGGCCTCATGTGGAGAGTTTGTGTTCTTACTGGATAGATCTGGCAGTATGGCAGGGTCCCGTATAAAGAGTGCCAGGGAAACTCTGCTGCTCCTGTTAAAGAGCTTACCCATAGGCTGCTATTTCAACATCTACAGTTTTGGGTCCAGCTATGAACACATCTTCCCTGAGAGTGTGGAGTACAGCCAGAAGACCATGGAAGAGGCtctgaaaaaagttgaagagaTGCAAGCTAATCTGGGAGGAACAGAGATCCTTGAGCCCCTCAAACACATTTACAGCCAGCCCTGCATTCCCAGTCAACCTAGacaaCTATTTGTCTTTACTGACGGAGAGGTGTGCAACACCAAAGAAGTGATAAATCTGGTGAGGAAGAATTCAGGTTCCCACAGGTGTTTCTCTTTTGGGATTGGGGAAGGGGCCAGCTCTGCTCTTATCAACGGGTTGGCCAAGGAAGGAGGAGGTCACGCTCAGTTCATCACAGATACTGACAGGATGCAACCCAAAGTGATGCAGTCGCTGCGTTTTGCTCTGCAACCAGCTGTGATAGACATCTCAGTCGAGTGGGATTTGCCAAAGGGAGTGTCTGTTACTGCTCtctctccaccaatcacagcacttttccagggtcaaaggtcactggTTTATGCCCAGCTCACTGGACAGAGTTCAGAGGCAGCGGAGGGCTGTGTGATGGTGAAATACAGCCTGGCAGGTCATCCCTCTCAGAACCAGCTCCACTTCAGTCTCAAACCTGCAGAGGACACTGGATTAACGGTCCACAGGTTGGCTGCTCGGACTCTGATTCGCTCCCTGGAgatggaggggagagagagcggaggAGAGCAAGAGGAAGGAGTGAAGAAAAAGGTGGTGGAGCTCAGTGTCCCGTCAGGAGTGAGCAGTGCCTTCACTGCCTTCATTGCCGTCAACAAAGGAGACGGCAAGGTGCTTCAAGGACCTCTGGTGGTCAGAAATGTTCCAGCACCGAGGATGATGGCCTGTAGTATGGGTAGGTTTAATCGGTCCCGTCCTCCTGGTATGCCTACGAAGGCTATGGCACACTCTTCTCCATCCTATTCTCCTGGGATGGTGGACTGTGGTATCATGGGTAGGTCTGTTCAGTCCTGTCCTACTGGTATGCCTATGATGGCTATGCTGCACTCTTATTCATCCTATCTTCTTGGTAAAAGCCTTTTGCCCAAGCAGCCACCCAGAGACCCTTTGCTGCAGTTGGTCTCCCTCCAGAAGGCGTCTGGCTGCTGGGTGCTGGATCCAGCTCTGGCTGATGCACTGGGAAAGACCAGCAGggaggtggaaaagcccaagcCTGCATCGGTGAACCAGGAAGTATGGGCCACCATTCTGGCTCTGATCTGGCTTCATGGTTTCAAGATGGATGCTCAGGAAGAGTGGGAGCTTCTGGCTATGAAGGCGGTGTCATGGCTCCGTGCCCAGAATGcCCCATGTGTGATAGAGTGTGTGGAAGCTGCAAATGCTCTGTTGGGGTTCAGTGTGCAGAAAGATGCCCTGGGACTCTGAGATTTTCATTAGATCAGCTTCTCTTTAGGATTGAAGCAGATTTACTCCATCCAACATTTTCTTAATAAACATTGTACCATACTATTTACCTAGAAACAATTAAATATTgttcttttatgtttttcta
>XM_039823713.1
aaatgagaaaacagGGCAGGTCTTGCCTAGAGGCGTAACCTGTAGGCGTGGCTTTGGATCGACAGCATATCCCCAACCAGAAACCCTTTGCGTTGGATTTCCCTCTCCGGAAGCTTCCTGCTCAGAGTGCACTTTTTTCCCGCAAAGCAATAACTACTGAAAGTGTAACCTGTTAACCAGGCATGATGATGAACTGCTGTGGTCTGCTCACTTCCAATAAGGAAGCAGTTCCTCTGAAGAGCGTGGAGGTGGAGCTGGAGGTGAGGGACCATGTGGCTACAGTGGTCTCCACTCTGAACTATGAGAACAAGGAGGACAAACCACTGGAGGCTGTTTTTGTCTTCCCTCTGCCTGGAGATGCTGCTGTCTGTCACTTCAGTGCTAagattggacagacagagaTTGTAGCTGAGGTGAAGGAGAAACAGAAGGCTCGTGAGGAGTATGATGATGCTTTGAGCTCTGGTCAGCAGGCCTTCCTGTTGGAGGAGAGTGATCAGAGTCCAGATATATTCTCTCTGAGTGTGGGCAGTCTGCGTCCAGGAGAGAGCGCCTCCATCAGGCTGGAGTACGTCACTGAGCTGGCTGTGCAGGCTGATGAAGGGCTGAGATTTTGTCTGCCTGCTGTGCTCAACCCTCGCTACCAACCTCAGGGGAGTGGAGGTAGTGGAGGTGGCAACGTTCAGATGACCTCTGTTCCAGCCTCTATGGTGCCCTacagtctgtctttctctgcccGAGTGTCCTCTCCTCATCCAGTCTCTAAAGTAGAGTCCAACTGTCCCCTGGACGCTCTCCAGTACTTCAACACAGAGCAAACCCAGGCTACGGTCAAATTGGCTGCAGGACACAAGTTTGACAGAGATGTTGAACTGCTGATTTATTACAAAGATGCCCACCAGCCCACTGCTGTGGTGGAGACAGGACAGACCTCTGCCAAGCCTGGCTCTCTGATGGGTGATCCAGTGGTGATGCTGAGCCTGTACCCTGAGTTCCCCCAGGCTGTGATGTCTTTAGTGGCCTCATGTGGAGAGTTTGTGTTCTTACTGGATAGATCTGGCAGTATGGCAGGGTCCCGTATAAAGAGTGCCAGGGAAACTCTGCTGCTCCTGTTAAAGAGCTTACCCATAGGCTGCTATTTCAACATCTACAGTTTTGGGTCCAGCTATGAACACATCTTCCCTGAGAGTGTGGAGTACAGCCAGAAGACCATGGAAGAGGCtctgaaaaaagttgaagagaTGCAAGCTAATCTGGGAGGAACAGAGATCCTTGAGCCCCTCAAACACATTTACAGCCAGCCCTGCATTCCCAGTCAACCTAGacaaCTATTTGTCTTTACTGACGGAGAGGTGTGCAACACCAAAGAAGTGATAAATCTGGTGAGGAAGAATTCAGGTTCCCACAGGTGTTTCTCTTTTGGGATTGGGGAAGGGGCCAGCTCTGCTCTTATCAACGGGTTGGCCAAGGAAGGAGGAGGTCACGCTCAGTTCATCACAGATACTGACAGGATGCAACCCAAAGTGATGCAGTCGCTGCGTTTTGCTCTGCAACCAGCTGTGATAGACATCTCAGTCGAGTGGGATTTGCCAAAGGGAGTGTCTGTTACTGCTCtctctccaccaatcacagcacttttccagggtcaaaggtcactggTTTATGCCCAGCTCACTGGACAGAGTTCAGAGGCAGCGGAGGGCTGTGTGATGGTGAAATACAGCCTGGCAGGTCATCCCTCTCAGAACCAGCTCCACTTCAGTCTCAAACCTGCAGAGGACACTGGATTAACGGTCCACAGGTTGGCTGCTCGGACTCTGATTCGCTCCCTGGAgatggaggggagagagagcggaggAGAGCAAGAGGAAGGAGTGAAGAAAAAGGTGGTGGAGCTCAGTGTCCCGTCAGGAGTGAGCAGTGCCTTCACTGCCTTCATTGCCGTCAACAAAGGAGACGGCAAGGTGCTTCAAGGACCTCTGGTGGTCAGAAATGTTCCAGCACCGAGGATGATGGCCTGTAGTATGGGTAGGTTTAATCGGTCCCGTCCTCCTGGTATGCCTACGAAGGCTATGGCACACTCTTCTCCATCCTATTCTCCTGAAAGCCTTTTGCCCAAGCAGCCACCCAGAGACCCTTTGCTGCAGTTGGTCTCCCTCCAGAAGGCGTCTGGCTGCTGGGTGCTGGATCCAGCTCTGGCTGATGCACTGGGAAAGACCAGCAGggaggtggaaaagcccaagcCTGCATCGGTGAACCAGGAAGTATGGGCCACCATTCTGGCTCTGATCTGGCTTCATGGTTTCAAGATGGATGCTCAGGAAGAGTGGGAGCTTCTGGCTATGAAGGCGGTGTCATGGCTCCGTGCCCAGAATGcCCCATGTGTGATAGAGTGTGTGGAAGCTGCAAATGCTCTGTTGGGGTTCAGTGTGCAGAAAGATGCCCTGGGACTCTGAGATTTTCATTAGATCAGCTTCTCTTTAGGATTGAAGCAGATTTACTCCATCCAACATTTTCTTAATAAACATTGTACCATACTATTTACCTAGAAACAATTAAATATTgttcttttatgtttttcta

Function


NR:

description
von Willebrand factor A domain-containing protein 5A isoform X1

GO: NA

KEGG:

id description
K24510 VWA5; von Willebrand factor A domain-containing protein 5

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039823706.1 True 2662 mRNA 0.51 19 21516913 21528738
XM_039823713.1 False 2583 mRNA 0.51 18 21516913 21528761

Neighbor


gene id symbol gene type direction distance location
LOC120551403 LOC102783338 coding downstream 2209 21507054 ~ 21514704 (-)
LOC120573866 LOC101481218,LOC101479958 coding downstream 14660 21490526 ~ 21502253 (-)
LOC120573817 LOC101479958 coding downstream 54418 21443343 ~ 21462495 (-)
LOC120573852 LOC101479958 coding downstream 81020 21417316 ~ 21435893 (-)
rap1gap2a rap1gap2,LOC102786908 coding downstream 111385 21295349 ~ 21405528 (-)
si:ch211-132b12.7 NA coding upstream 36790 21565551 ~ 21572680 (-)
LOC120553405 cntd2 coding upstream 44568 21573329 ~ 21577861 (-)
akt2 akt2,LOC100707971 coding upstream 51618 21580379 ~ 21599999 (-)
dhx40 dhx40 coding upstream 71768 21600529 ~ 21607740 (-)
LOC120572601 NA coding upstream 79283 21608044 ~ 21610638 (-)
G18492 NA non-coding downstream 105714 21410908 ~ 21411199 (-)
G18429 NA non-coding downstream 400919 21113372 ~ 21115994 (-)
LOC120575525 NA non-coding downstream 430038 21085093 ~ 21086875 (-)
G18391 NA non-coding downstream 579664 20936993 ~ 20937249 (-)
G18385 NA non-coding downstream 628884 20887806 ~ 20888029 (-)
LOC120572042 NA non-coding upstream 1236 21529997 ~ 21532755 (-)
G18626 NA non-coding upstream 104219 21632980 ~ 21695722 (-)
G18631 samsn1,LOC102311369,LOC107374247 non-coding upstream 122942 21651703 ~ 21652866 (-)
G18669 NA non-coding upstream 291228 21819989 ~ 21878764 (-)
G18758 NA non-coding upstream 619278 22148039 ~ 22148297 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 254990 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 419712 21094177 ~ 21097201 (-)
LOC120547993 NA other downstream 1375375 20137072 ~ 20141538 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 1706783 19800751 ~ 19810130 (-)
fbxo46 fbxo46,LOC102786997 other downstream 1799606 19701227 ~ 19717307 (-)
LOC120572205 NA other upstream 82053 21610814 ~ 21615246 (-)
gdpd5b gdpd5,LOC103357216 other upstream 135315 21664076 ~ 21710363 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other upstream 454541 21983302 ~ 22007175 (-)
G18885 gramd1b other upstream 1610452 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 1717842 23246603 ~ 23252420 (-)

Expression



Co-expression Network