paf1 (paf1)


Basic Information

Item Value
gene id paf1
gene name paf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 36294330 ~ 36301552 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824142.1
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacaggaaAATATACTGGAGAGTATATCCCATAGTAGGAAGCCTCTCTCAAAGCAATATGTCCATGTTATATTAAGTGAATGAACTGAAAGTGAAATTATACTTTTAAAATATACAGCTCTTTGCAAGCCTGTGAGAGTACATGGTCTGccaatacatttttgtattcCCTCTGTCAATTAAAGGGGTTGCTTTTGAACAAAACCAGCAGATTGAATTTTGGTCTCATTTTGTAACTGAGACGAAGACTGTCAATGTTGTTTTGTATCAATATGCTAGCTAAATAAATGGAAGTATTTTTAAGTGCAAGTTTTTGCTGCGTATACATTTATACAACCTTAATACATCGCATGCCAGTGCAGTAGGGGTCGCTCACAATAAAGCAATGCAAATCCTCCTCAGAGCTGAGGAGCTCGATACACTACCGGGTCATCATCATATCTTCCCGGGTCGAAATAAAAATGCCGTACACATTTTGAATAAAGTTAGATTTAATAGTTGGATGTACTGTTACTTAGGTGAAAGATTTGGTTTGTCATCGGACGTATTTTTGTTGATAGTTTGTGCAAACAAATAACTTTGTTTTTAAGTTGTGAGCAGTTTGTCGTAAACATGGCTCCAACGATTCAGACTCAATCTCAACGAGAAGACGGCCACAGTAGGCCATCCTCTCATAGAACTGTCCCAGAGAGGTCAGGGGTGGTCTGTCGAGTGAAGTACTGCAACAGCCTGCCTGACATCCCTTTTGACCCCAAATTCATCACATATCCATTTGATCAGCACAGGTTTGTACAGTATAAAGCCACTTCTCTAGAGAAGCAACACAAGCATGAGCTCCTGACTGAGCCGGACCTCGGGGTCACCATTGATCTCATCAACCCAGACACCTACCGCATAGACCCCAGTATACTGTTGGATCCCGCTGATGAAAAACTGTTGGAAGAAGACATCCAGGCTCCATCCAGCTCCAAGAGGTCACAGCAGCATGCCAAAGTGGTCCCGTGGATGAGAAAGACAGAATATATTTCTACAGAGTTCAACAGATACGGAGTTTCCAACGAGAAAGTGGAAGTCAAGATCGGTGTATCTGTCAAACAGCAGTTTACAGAAGAAGAAATCTACAAGGACAGAGACAGCCAGATTTCTGCTATTGAGAAAACCTTTGAGGATGCACAGAAATCAATTTCACAGCACTACAGTAAACCCAGAGTTACTCCTGTGGAGGTTCTACCCGTGTTCCCCGACTTCAAGaTGTGGATCAACCCATGTGCTCAGGTCATCTTTGACTCTGATCCTGCACCTAAAGACATATCGGGACCAGCGGGAGTGGAAATGATGTCTCAGGCCATGATCAGAGGTATGATGGATGAGGAGGGAAATCAGTTTGTGGCCTACTTCCTGCCCCATGAAGAAACCATTCGCAAGCGCAAGAGAGACTGCGATGAGGGGATGGATTATATGCCTGAGGATCTGTATGATTACAAGATCGCCAGGGAGTACAACTGGAATGTCAAGAACAAAGCCAGCAAGGGCTATGAAGAGAACTACTTCTTCATCTTCAGGGATGGAGATGGTGTTTACTACAATGAGCTCGAGACAAGGGTGCGTTTGAGCAAGAGGAGAGCCAAGGCTGGAGCACAGTCAACCACAAACGCTGTGCTGGTGTGTAAGCACAGAGACATGAACGAGAAGGAACTCGAAGCCCAGGAAGCTCGTAAAGCTCAGCTGGAGAACCATGAGCCagaagatgaagaggaagaCATGGATAAGGACTTGCAGGACTCGGGTGACGAGAAAGAGAAGGGCAGCGGCAGTGAGGCAGAGAACTCTGGTAGTGAATCTGAGAGGGAAGATGAAGAGCCGGAACCAAGGGGAGAGGAGGACGAAGAGGATGAGGACCGAGAGAAGCGGAGGAGGAAGGCAAGCGGCAGCGGAAGTGAGAGCGGCGAGGAGAGGACGAGGGAAATGCGAGACGAGGAAGAGATCTTCGGCAGTGACGACGACAGCGACGACAACGAGGAGAACGAGAACAACAAGAACTCGGCCAGGAGCAGCGGCGAGGAGGGCAGCGGGAGCGACGACGACGGAGGGAACCGAGGAGGCAGCAGGAGTCGCAGCGCCTCTCCAGCACACAGCGACCGCAGCAGCGAGCACTCGGAGACCCGGGCTCACAGCGGGAGTGGAAGCGAGCGAGGCTCGGATTCCAGTGATGCCAGTGACAGTGAATAAGACCTGTGGTCCGGAAGACGGCAAGGTGACGGCCACCTTTTCTTACCTCCGTGTTCAGCTCCAAACATGGCCGCGTTGCCCGGTCACTGACCCTAATGTTAGCGCAGTCTGGGGATGTAGTTTCTTCTGATTAcaaatagggttgggcatcgttttggatattaacaattctgatttGAATTCTGATtcttttgaggggtggagttgaaacgggtcacatgcctatttttcacaaataagaggcaAGTTTTATTTTGGATCAGTGGTGGGTTGCGGTTTTACAGcactttttcaaatgtaaaataaagccacactagagcgctagttgttactgtgctccaaggccacaacacaacaagcgcctggccgcttcggaaaccaaaacttgcgcatataaaattgggaagcgatgatcggatttgaaaccaaatcctctaaCCGATTCCAGTAAAGAAACCATTCTACTGGAATCGTGATTTCTGAaccgattccaagtaggaatcggttcccgatgcccaatcctacttCCAAATGGAGATGCTCGTTGGTTTTGGACCGGGGGAATTCTCTTCAATCCAGTTTTTAATTGTAGATTTGTCTTGCACTCTGTTTTTTGTCTGTCAGATATTCCGTACAGGATCATgtaaaaatgtctttgttttctcTGCTTTTGATTTGTCATTGTGTTAAGGCTTTGAAACTGATAATAAAATGCAGGTGACATTTTGTAAGAAA

Function

symbol description
paf1 Predicted to enable RNA polymerase II complex binding activity and chromatin binding activity. Involved in heart development. Located in nucleus. Part of Cdc73/Paf1 complex. Orthologous to human PAF1 (PAF1 homolog, Paf1/RNA polymerase II complex component).

NR:

description
PREDICTED: RNA polymerase II-associated factor 1 homolog

GO: NA

KEGG:

id description
K15174 PAF1; RNA polymerase II-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824142.1 True 3005 mRNA 0.46 14 36294330 36301552

Neighbor

gene id symbol gene type direction distance location
LOC120574060 samd4b coding downstream 4528 36274325 ~ 36289802 (-)
socs9 LOC103356485,LOC100693056,LOC102211799 coding downstream 20097 36270427 ~ 36274233 (-)
dixdc1a LOC102793002,LOC103356482,LOC100698087,LOC102209574,LOC102311703,LOC101463951 coding downstream 336611 35947890 ~ 35957719 (-)
cadm1b cadm1,LOC103139681,LOC103474260 coding downstream 530878 35591253 ~ 35763452 (-)
jam3a jam3 coding downstream 851051 35431917 ~ 35443279 (-)
rpa1 rpa1,LOC102215177,LOC101468816 coding upstream 473872 36775424 ~ 36808277 (-)
serpinf2b NA coding upstream 508144 36809696 ~ 36812482 (-)
wdr81 wdr81 coding upstream 511070 36812622 ~ 36829468 (-)
LOC120547112 NA coding upstream 608092 36909644 ~ 36921917 (-)
pitpnm3 pitpnm3,LOC102785427 coding upstream 683500 36985052 ~ 37097798 (-)
G21996 NA non-coding downstream 28362 36265723 ~ 36265968 (-)
G21983 NA non-coding downstream 325297 35967528 ~ 35969033 (-)
G21953 NA non-coding downstream 422281 35865775 ~ 35872049 (-)
G21941 NA non-coding downstream 456895 35835989 ~ 35837435 (-)
G21885 NA non-coding downstream 711624 35582481 ~ 35582706 (-)
LOC120574085 NA non-coding upstream 1141 36302693 ~ 36306833 (-)
G22034 NA non-coding upstream 5490 36307042 ~ 36308123 (-)
G22045 NA non-coding upstream 50469 36352021 ~ 36391775 (-)
G22050 NA non-coding upstream 116343 36417895 ~ 36418115 (-)
LOC120548838 NA non-coding upstream 139924 36441476 ~ 36456395 (-)
lrfn1 lrfn1 other downstream 30291 35976742 ~ 36264039 (-)
zgc:77784 LOC103362442 other downstream 958098 35265295 ~ 35336232 (-)
dyrk1ab dyrk1a other downstream 1198079 35047178 ~ 35096251 (-)
LOC120570300 NA other downstream 1729785 34555835 ~ 34564545 (-)
G21674 NA other downstream 1812297 34481458 ~ 34482033 (-)
taok1a LOC103356490,LOC104958432 other upstream 8365 36309917 ~ 36330409 (-)
dph1 dph1,LOC102789142 other upstream 159127 36460679 ~ 36550114 (-)
kiaa0753 kiaa0753 other upstream 810644 37112196 ~ 37135841 (-)
G22245 dynll2a,LOC107554284 other upstream 963021 37264573 ~ 37269320 (-)
tada2a tada2a other upstream 1137434 37438986 ~ 37450840 (-)

Expression


Co-expression Network