LOC120574245


Basic Information

Item Value
gene id LOC120574245
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13568844 ~ 13574504 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824493.1
gaCGTGACACCGGAAGCGGATGTGCAGCACGGAATAGTTTGAGAAACGCACAGGACGCCATATAAAGGACAGCAAACGTTACGTTTTCACGGAAGAAAGTCTGTTGTTGTTTAAAGTCCAACTCACTCTGATCTGAAGTTACTTTTTAAGCTTTATAAAATGCCCCGCGACCTGGCGCACGCGGCGGGCTGAGTTTTTAATGTGACTGAGGGAAAAAATGGAGGCGAGGTTCGGCGGCGAAGTGGCGGCGATCGTGGAAGTCGCGATCCAGGCAACCGTCTCTGTTTTCAGAGATGTCTGGGCGAAAGAGGCGCCAAACGCCACATGGGGAGAGGCGAAGCTCGGCGAACTCCAGGACATCGAGAAGTGTCTGGTGGTCCAGATCCACAAGGTGTTCACGGAGTTCTCCTCggagctgctggaggagaacGAGGCTCTGCGGGCCAAGGTGGAGCAGCTGGAGGATGTGCTGCACCGGAAAGCCGGGCAGCTGGAGCAGGAGCTGGAGGCCAGAGTGGTCCAGCTGggcagagagatggagcagcTGGAGGAAGAGCTGAAGAGCATCAGCGAAGGTAGCGACAGGACACGAGGAGGCCCGACCCACGTCCTGCTGCAGGACGGCTCACTGATAGGAGCACCGGTTGTGTCGGTGTCCGCCAGTCCTGCTGCCCCTCTGGTCGCTGCGAAGGAATCCAGCTCGGACCCTCTTCTGGTCTCATCGGGAGGCGCCGAAGCAGTTCCCAGCGCCGCAGCTGGATCTGTGGCGGTCCCTGAGTCTGCGATAGCCCCGGTGATGTTCGTCGGCAGAGGCCGCTCTGCTCCCGCGGTGCTGTTGCTGAGCGCCAGCCAAGTCGTCTACCAGCGTCCTGCGCCATCGACGGCCGTCTCCGAGACGACGGGATCCACGCGGCTCGTTCTCAAACCGGCAGCCTCGCCGGAGTCTACGCCGCAAGGCGTCCCCAGTCCAGACTCCAGCTCCGCCAGCGATGACGACTCGGCACAGGAAAAGACATCTGCGGGAGAAGCCGCTTCAGGGAGACCGAAGAGGATCAGGAAGCCAACTTCTAAAGCCGAAGAAGTTTTCATTGACAACAGCACCAAAAAGAAACGCATCAAGAAAGGGAGAGGGcgggggaaaagaaaagagttACAGACAGCGAGGCGGTTCTCCTGCGAGCGTTGTAACCTTGGCTTTTACTGGAAAGGTGACTTTACGAAACACATGAAGCTCCACAAGGAGCCTTTTCCTTGCGAGAAGTGCGGCAGAAGTTTCCGTGAAAAGAAGTCTTTGGAAAATCACCTTTTGCGCCACGAGCAAAGGCAAGCCCCCATGCCCTTCTCCTGTCCCAAGTGTAACCGATCGTACCGAAGAGAGCAGTCGTTTCAGAATCACCTCAAGCGTCACCAGCTGGTGGAGCTACCGAAGCCGTTCGCCTGCGATCAGTGTGGGAAAACCTTCCGAGTCCAGCAGTCCCTTGAAAACCACATCGTGCGCCACCAGAAATCGAAGCAACTGCTGAAGTGCCAGCTTTGCGAGAAGACTTGCAAGACGGCGGTCCAGCTCAAATGCCACATGAGCGTACACTCGGAAGACCGGCCGTTCAGCTGCGCGACGTGCGGGAAGGAGTTCAAGAGTAAAGACACCCTCCGCTTCCACCGGATCGTTCACTCCgaccaaaaaaaatacaaatgcacAATGTGCGACGAGACGTTCAAATACGCCCACTCCCTGACCGTGCACAAGAGGAAACACACAGGCATCACTCCGTTCGTCTGCACCGTGTGCAACAAGCCGTACAGGACCGGCACTGCTCTGAAAAGACACAGCATAGTCCACACCGGGGAGAAGCCGTTCACCTGTCACATATGCGGCGCCAGGTTCAGCCTGAATAACAATCTCAAGAGGCACCTTCGCATCCACACGGGAGAGAAGCCGTTCACGTGCCAGGAGTGTGGCAAGAGCTTCTCGGAAAACAACAAGCTCAAGTCCCACATGCTCATCCACGGCGCCAGGAAACCCTTCATGTGCGATCTGTGCGGGAAGACCTTCCTCTTCAACTGCAGGCTGCGGATACATCAGAAGTACGTGCACGCTAACCGGAGCAAGGAGACGGACGGCACGCAAACCTCCTCCCAGCCTAGAAGGTGCAACGCGTCTTCGCTGGTTAAACCATACAGCTGCAAAATATGCCTGAGAGGTTTCAGCGCCGCGTCGTCCCTCAAACTTCACGAAAGAGGCCACAGCGAGCAAAAGGAGTTCAACTGTGGCATATGTGGGAGGGCGTTCCATAACAAGTACTCTTTCGGCTATCACCAGAGAAGCCACGCGGGGGAGAAGCCCTATATTTGCGACGTGTGCGGGAAGAGGTTTTTCCTCGCCGGCAGCCTGAAGCAGCACAAGCGCATTCACACCGGCGAAAAACCGTACAAGTGTGACCAGTGCGACAAGGCCTTCAGAACCGACGGAAACTTCTACAGACACTTGCGGATCCACACGGGCGAGAAGCCGTTTGAATGTGTGTACTGTCACCGGAAGTTCCACCAGTCGAACCAGCTCAAGTCCCACATGCAGGTCCACACGGGGCAGAAGCTCTACTCGTGCCAGCAGTGTGGCCGCGGCTTCTCAGATTCCAGGCAGCTCAGGAAGCACAGCTGTGACGGGCCATAGGTGATGGGATGTCTGCCAGAACGGTAGAACATGTAATCTGATGAagtcctaaataaataaaacatggcTTGTTGTA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824493.1 True 2747 mRNA 0.56 4 13568844 13574504

Neighbor

gene id symbol gene type direction distance location
LOC120547251 NA coding downstream 1290 13556280 ~ 13567554 (-)
LOC120547238 LOC102785257,LOC103373880,LOC104952507,LOC105417105 coding downstream 12975 13541742 ~ 13555869 (-)
mark4b mark4,LOC107094871,LOC103373878 coding downstream 38737 13465012 ~ 13530107 (-)
klc3 LOC104964758,LOC103368325 coding downstream 122843 13418951 ~ 13446001 (-)
pak4 LOC103368331 coding downstream 358318 13170383 ~ 13210526 (-)
LOC120574254 sptbn4 coding upstream 1589 13576093 ~ 13694036 (-)
kcnk6 kcnk6,LOC104944303 coding upstream 145383 13719887 ~ 13737393 (-)
prx NA coding upstream 191040 13765544 ~ 13811769 (-)
pld3 pld3,LOC103364087 coding upstream 251412 13825916 ~ 13838806 (-)
foxa3 LOC103364086 coding upstream 320530 13895034 ~ 13899904 (-)
G16751 NA non-coding downstream 170524 13396210 ~ 13398320 (-)
G16737 NA non-coding downstream 208625 13318063 ~ 13360219 (-)
G16716 NA non-coding downstream 312964 13254343 ~ 13255880 (-)
G16709 NA non-coding downstream 403250 13164817 ~ 13165594 (-)
G16706 LOC101165163 non-coding downstream 443182 13123719 ~ 13125662 (-)
G16882 NA non-coding upstream 193395 13767899 ~ 13770080 (-)
G16888 NA non-coding upstream 330700 13905204 ~ 13905788 (-)
G16889 NA non-coding upstream 331400 13905904 ~ 13908030 (-)
G16898 NA non-coding upstream 353839 13928343 ~ 13928714 (-)
G16894 NA non-coding upstream 376557 13951061 ~ 14016471 (-)
sae1 sae1 other downstream 233691 13313443 ~ 13335153 (-)
ccdc9 ccdc9 other downstream 306995 13224914 ~ 13261849 (-)
slc8a2b LOC102291167 other downstream 713117 12664199 ~ 12855727 (-)
srsf7a srsf7,LOC103358184 other downstream 906654 12654605 ~ 12662190 (-)
LOC120544465 islr2 other downstream 938752 12625965 ~ 12630092 (-)
si:ch211-14c7.2 LOC103364094,LOC102787713,LOC101474093,LOC102298349,LOC106947863,LOC103138296,LOC106921473 other upstream 88403 13662907 ~ 13762368 (-)
G16871 blvrb other upstream 127139 13701643 ~ 13708040 (-)
G16880 NA other upstream 181445 13755949 ~ 13823057 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other upstream 504073 14078577 ~ 14086764 (-)
caln1 caln1,LOC103372560,LOC107097061 other upstream 673424 14247928 ~ 14322833 (-)

Expression


Co-expression Network