zgc:162698 (tmem87a,LOC101066087)


Basic Information

Item Value
gene id zgc:162698
gene name tmem87a,LOC101066087
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10153891 ~ 10178798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824587.1
CTGCCAACGTCAGCCGGAACACGGAAGTATTCAGCTTGTTGTGAGTTGTTCAGCTTTTGCTGGCTGCTTCTACTATCTTGTTCCTCCTCGTCGCTCACAAATGGCGCGTTCCGCGGCTCTGGGCCGGACAGGGCCGGGTCGGACCGGGCCAGGACTCTGGTACTTGGCGCTGGTGCTGACGGTGCTGGTCGGGCCGGGCGGCGCAGTGTCCGAACCGGGGAAATGGATCCTGAATGTCGACAGCGAAAGCGTGAAGAAGCAGAGCTACTTCCTCTTCACTAAAACTCTGTTCAACAGCAGCTTCATCCATCTGAAGGCCGAGGCCTGCAACTCGTCGGCAGCCGTCAAGCTGGACGTGTCCTGGTACCTGAGGAACTCCCACTGCTACGACGAAGTCTTCCGCCTGGACgcGAACGGGGCAAAGAATTACTTCAACTCGACGAAGGTCAGCCAGGGAGGAGGAAGTGGATATTATGTTTTTCACCAATATCGTCCAGTCACCTGCCAGCCGCACATTAGCCCCCAAGCGTTCGGTCTGGATGAATTTGAGATGAAAACTCGACTGACGGAATTGCCGCAGGAACAGCCAAACACAGAGAAGAATTTAggaagcaggaggaggagagatgcgGACGCTCCAAAACCAAAGGCCGCCGCGGTACAGAAGGAAAGCGCTCCGGCTGAAACGGGGAACGCTGCCGTCCCTCATAAAgagGCGGCAGCTCATTTATCCATGGACACGGTGGCCGAGAGCTGGGAGGACGGACCCTACATGTTCATCCTGAAGATCAGAGAAATCGGCCCCGCCAACCCACCCACACCCTGGAGTCTGCAgctGCAGATCAGCATGAAGGGTCCTCACGACTACTTATCAGCCGCAGAGTGGCCAATGATGGTgTTCTACATGGTGATGTGCATCGTGTACGTGCTGCTGGCCGTGTTGTGGCTGCTCCTGTCGGCGTGCTACTGGAGGGATCTGCTCCGGATCCAGTTCTGGATCGGAGGGGTCATCTTCCTGGGCATGCTGGAGAAGGCCGTGTACTACGCCGAGTTCCAGAGCATCAGATACGACGGCCTGTCAGTCCAGGGCGCGGTGGTGTTTGCCGAGGTGCTCTCGGCGGTGAAGAGGACTCTGGCCAGGGTGCTGGTGATCATCGCCAGTCTGGGATACGGCATCGTCAAGCCCAGACTCGGCGCGCTGCTGCACAGAGTAGTCGGAGTCGGTCTGCTCTACTTGATCTTCTCCATCGTCGAGGGGATCCTACGAGTCAACGCTgATCGAGGCGCCAACACCAGCAGTAGGCTTTTGTGTGACATAGTGCTGGCCTTCATTGACTCCTGTGTTGTCTGGTGGATCTTCGTGAGTCTGGCCCAGACGATGAAGCTGCTGAGGCTGCGGAGGAACGTGGTCAAGCTGTCGCTCTACAGACACTTCACCAACACGCTCATCTTCGCCGTCATAGcgtCGGTCATCTTCATCATCTGGAGCACCAAGACCTTCAGACGGTCtacatgtctgtctgtgagtaCTCTGCTAGGATTTAGTACAGCTCAGGTCGGTTGGTTAGTAAGCCATGTTGTTGAAACTGTTCTCGAACTCTTATTGCATGTGTTTAAttcactatttttgtcattttggttTCTAAACTTATAGATCGTTCAACCCTCT
>XM_039824593.1
TCCCTGCCAACGTCAGCCGGAACACGGAAGTATTCAGCTTGTTGTGAGTTGTTCAGCTTTTGCTGGCTGCTTCTACTATCTTGTTCCTCCTCGTCGCTCACAAATGGCGCGTTCCGCGGCTCTGGGCCGGACAGGGCCGGGTCGGACCGGGCCAGGACTCTGGTACTTGGCGCTGGTGCTGACGGTGCTGGTCGGGCCGGGCGGCGCAGTGTCCGAACCGGGGAAATGGATCCTGAATGTCGACAGCGAAAGCGTGAAGAAGCAGAGCTACTTCCTCTTCACTAAAACTCTGTTCAACAGCAGCTTCATCCATCTGAAGGCCGAGGCCTGCAACTCGTCGGCAGCCGTCAAGCTGGACGTGTCCTGGTACCTGAGGAACTCCCACTGCTACGACGAAGTCTTCCGCCTGGACgcGAACGGGGCAAAGAATTACTTCAACTCGACGAAGGTCAGCCAGGGAGGAGGAAGTGGATATTATGTTTTTCACCAATATCGTCCAGTCACCTGCCAGCCGCACATTAGCCCCCAAGCGTTCGGTCTGGATGAATTTGAGATGAAAACTCGACTGACGGAATTGCCGCAGGAACAGCCAAACACAGAGAAGAATTTAggaagcaggaggaggagagatgcgGACGCTCCAAAACCAAAGGCCGCCGCGGTACAGAAGGAAAGCGCTCCGGCTGAAACGGGGAACGCTGCCGTCCCTCATAAAgagGCGGCAGCTCATTTATCCATGGACACGGTGGCCGAGAGCTGGGAGGACGGACCCTACATGTTCATCCTGAAGATCAGAGAAATCGGCCCCGCCAACCCACCCACACCCTGGAGTCTGCAgctGCAGATCAGCATGAAGGGTCCTCACGACTACTTATCAGCCGCAGAGTGGCCAATGATGGTgTTCTACATGGTGATGTGCATCGTGTACGTGCTGCTGGCCGTGTTGTGGCTGCTCCTGTCGGCGTGCTACTGGAGGGATCTGCTCCGGATCCAGTTCTGGATCGGAGGGGTCATCTTCCTGGGCATGCTGGAGAAGGCCGTGTACTACGCCGAGTTCCAGAGCATCAGATACGACGGCCTGTCAGTCCAGGGCGCGGTGGTGTTTGCCGAGGTGCTCTCGGCGGTGAAGAGGACTCTGGCCAGGGTGCTGGTGATCATCGCCAGTCTGGGATACGGCATCGTCAAGCCCAGACTCGGCGCGCTGCTGCACAGAGTAGTCGGAGTCGGTCTGCTCTACTTGATCTTCTCCATCGTCGAGGGGATCCTACGAGTCAACGCTGCTGAAGGTGATGTAGTTCTCCTGGCTGCTATTCCTCTGGCTGTGCTCGACTCTACCCTCTGCTGGTGGATCTTCGTGAGTCTGGCCCAGACGATGAAGCTGCTGAGGCTGCGGAGGAACGTGGTCAAGCTGTCGCTCTACAGACACTTCACCAACACGCTCATCTTCGCCGTCATAGcgtCGGTCATCTTCATCATCTGGAGCACCAAGACCTTCAGACGGTCtacatgtctgtctgtgagtaCTCTGCTAGGATTTAGTACAGCTCAGGTCGGTTGGTTAGTAAGCCATGTTGTTGAAACTGTTCTCGAACTCTTATTGCATGTGTTTAAttcactatttttgtcattttggttTCTAAACTTATAGATCGTTCAACCCTCT

Function

symbol description
tmem87a Involved in retrograde transport, endosome to Golgi. Located in Golgi cisterna membrane.

NR:

description
transmembrane protein 87A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824587.1 True 1669 mRNA 0.55 15 10153891 10178795
XM_039824593.1 False 1663 mRNA 0.56 15 10153891 10178798

Neighbor

gene id symbol gene type direction distance location
dharma NA coding downstream 302223 9847998 ~ 9851668 (-)
LOC120554346 NA coding downstream 521863 9631923 ~ 9632028 (-)
LOC120543835 NA coding downstream 610750 9531021 ~ 9543141 (-)
LOC120551135 LOC101071594,LOC102800178,LOC103356830 coding downstream 622796 9524207 ~ 9531095 (-)
LOC120544027 ap2m1,LOC108440593,LOC106580654,LOC106612407 coding downstream 650997 9488322 ~ 9502894 (-)
LOC120551203 NA coding upstream 48430 10227228 ~ 10248071 (-)
LOC120551206 NA coding upstream 78813 10257611 ~ 10342658 (-)
LOC120574326 NA coding upstream 163584 10342382 ~ 10352839 (-)
si:cabz01090165.1 LOC100707198,LOC102192222 coding upstream 314317 10493115 ~ 10567391 (-)
LOC120547527 LOC103361823,LOC107379843,LOC108244675 coding upstream 1317374 11496172 ~ 11501340 (-)
G16029 NA non-coding downstream 20751 10132868 ~ 10133140 (-)
G16028 NA non-coding downstream 22952 10130348 ~ 10130939 (-)
G16027 NA non-coding downstream 24128 10129086 ~ 10129763 (-)
G16026 NA non-coding downstream 26483 10126908 ~ 10127408 (-)
G16023 NA non-coding downstream 31078 10122607 ~ 10122813 (-)
G16081 NA non-coding upstream 57700 10236498 ~ 10237527 (-)
G16136 NA non-coding upstream 174397 10353195 ~ 10376811 (-)
G16137 NA non-coding upstream 184334 10363132 ~ 10373280 (-)
LOC120547199 NA non-coding upstream 264928 10443726 ~ 10451113 (-)
G16162 NA non-coding upstream 291017 10469815 ~ 10505332 (-)
G16064 NA other downstream 4320 10140176 ~ 10149571 (-)
G16066 NA other downstream 15544 10136688 ~ 10138347 (-)
LOC120551163 NA other downstream 443759 9676835 ~ 9710132 (-)
LOC120551129 NA other downstream 631660 9513476 ~ 9522231 (-)
eif2a eif2a other downstream 720236 9348209 ~ 9433655 (-)
LOC120574297 NA other upstream 5205 10184003 ~ 10201584 (-)
LOC120574316 NA other upstream 140036 10318834 ~ 10330847 (-)
G16143 LOC103372137,LOC102304476 other upstream 194770 10373568 ~ 10424770 (-)
G16407 cul5,LOC101165410,LOC108248946 other upstream 1770539 11949337 ~ 11955578 (-)
G16422 NA other upstream 1810220 11989018 ~ 12033762 (-)

Expression


Co-expression Network