ssr3 (ssr3,LOC106581450)


Basic Information

Item Value
gene id ssr3
gene name ssr3,LOC106581450
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23960754 ~ 23964467 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825265.1
GCTGACGCGTCCCTCTTGTGCTCACACTCCGACGTGTCAGTCCTCTTGTGTCCAGAGCTGAGCAGCGAACAGGCCGGTCGATCCGCAGACATGGCTCCCAAAGGCAGCAACAAGCAGCAGTCAGAGGAAGACCTTCTCCTCCAGGACTTCAGCAGAAACCTTTCAGCGAAGTCCACCGCTCTCTTTTACGGAAATGCACTCATCGTTTCTGCCATCCCCATCTGGCTGTTTTGGAGGATTTGGCACATGGACCTTGTCCAGTCTGCAGTTTTGTATGCTGTGATGACTCTGGTCAGCACCTACCTGGTGGCCTTTGCCTACAAGAACGTCAAGTTTGTTCTCAAACACAAAGTTGCCCAGAAACGCGAGGATGCTGTTTCCAAGGAGGTAACCAGGAAGTTGTCTGAGGCAGACAACCGTAAGATGTCCCGCAAGGAGAAAGACGAGAGGATCCTGTGGAAGAAGAATGAGGTCGCCGACTACGAGGCCACCACCTTCTCCATCTTCTATAACAACACACTCTTCCTGGTGCTCGTCATCATCGCCTCCTTCTTTCTGCTCAAGAACTTCAACCCCACCGTCAACTACATTCTGTCCATCAGTGCCTCCTCAGGACTCATCGCTCTGCTGTCCACAGGCTCCAAGtaaaggaggaagaaaagggGAATACAAGCTGGAGGGGTGGGACTGGGGAGGAAGTGGGTTAAAGATGGGTATAcactattttgtttttcacttgTTAGGACTGGGGTTTAAGGGACTGAAATGTCACGTTTCAACTTCATGAAATTCATGATTAAAATGTCTGGAGGGTGTTTCTCCAGGTCTGTCTTCTGTTTTTtctaacaaataaaacaaccaGGTATACTTGTCCTCTGTTTTGATCGGA

Function

symbol description
ssr3 Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; hatching gland; otic placode; pectoral fin skeleton; and polster. Orthologous to human SSR3 (signal sequence receptor subunit 3).

NR:

description
Translocon-associated protein subunit gamma

GO:

id name namespace
GO:0006613 cotranslational protein targeting to membrane biological_process
GO:0005784 Sec61 translocon complex cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component

KEGG:

id description
K13251 SSR3; translocon-associated protein subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825265.1 True 889 mRNA 0.49 5 23960754 23964467

Neighbor

gene id symbol gene type direction distance location
tubd1 tubd1,LOC102795212 coding downstream 167778 23788779 ~ 23792976 (-)
dscamb dscam,LOC103377590 coding downstream 267377 23574700 ~ 23693377 (-)
LOC120553253 NA coding downstream 508336 23449151 ~ 23452418 (-)
brwd1 NA coding downstream 513923 23409820 ~ 23446831 (-)
LOC120554161 mipep coding downstream 551676 23377094 ~ 23409078 (-)
veph1 veph1,LOC106613251 coding upstream 227004 24191471 ~ 24281835 (-)
LOC120551456 LOC102079500,LOC107380520,LOC101465397 coding upstream 362999 24327466 ~ 24331196 (-)
serpini1 serpini1 coding upstream 371590 24336057 ~ 24355496 (-)
si si,LOC107380514 coding upstream 860556 24825023 ~ 24921452 (-)
slitrk3a slitrk3,LOC102777956 coding upstream 985908 24950375 ~ 24958185 (-)
G19137 gmps,LOC102797084 non-coding downstream 142316 23817565 ~ 23818438 (-)
G19126 NA non-coding downstream 173067 23785238 ~ 23787687 (-)
G19045 NA non-coding downstream 395512 23565003 ~ 23565242 (-)
G19033 NA non-coding downstream 489030 23464963 ~ 23471724 (-)
G19018 NA non-coding downstream 609330 23347437 ~ 23351424 (-)
G19158 NA non-coding upstream 19604 23984071 ~ 23984458 (-)
G19189 NA non-coding upstream 61751 24026218 ~ 24026684 (-)
G19191 NA non-coding upstream 64160 24028627 ~ 24031253 (-)
G19224 NA non-coding upstream 200611 24165078 ~ 24165298 (-)
G19264 ccnl1 non-coding upstream 206294 24170761 ~ 24178876 (-)
G19140 gmps,LOC102797084 other downstream 132800 23823821 ~ 23827954 (-)
slc33a1 slc33a1 other downstream 151302 23802515 ~ 23809452 (-)
atm atm,LOC102794456 other downstream 201928 23729488 ~ 23758826 (-)
LOC120574680 NA other downstream 499710 23453547 ~ 23461044 (-)
G18948 LOC103474743 other downstream 708334 23246603 ~ 23252420 (-)
G19270 ptx3 other upstream 283564 24248031 ~ 24252913 (-)
trip12 trip12 other upstream 2076828 26041295 ~ 26089702 (-)
LOC120570356 ypelc,ypel2,LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438,LOC107599611,LOC101078269,LOC104940871 other upstream 2342597 26307064 ~ 26334719 (-)
LOC120570434 fam124b other upstream 2469814 26434281 ~ 26445935 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other upstream 2486913 26451380 ~ 26469896 (-)

Expression


Co-expression Network