mmp13b (mmp13)


Basic Information

Item Value
gene id mmp13b
gene name mmp13
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21754393 ~ 21758179 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825479.1
AGCTTCTTGACCCCAATGACTGTTTTggacaacacagagacaacaacAATGATAGCTTTGCTGCTGCTGGCGCTGGTCGCTCACTCCTTTGCTCTGCCTCTGGCGTCTGGGGACAAAGACAACCAGCTTTTAGCAGAGAAGTACCTCCGTCGGTTCTATGGGCTTCCAACTGGTCTCCAAGGGAGACAGAGATCATCGGGTGACTTTCAGACCAAGATCAAGGCGATGCAGAGCTTCTTCAAACTCAAGGTGACTGGGAATCTGGACGACAACACTTTGAAGGTGATGAAGCAGGCCAGATGTGGCGTCCCTGACATCGGGGAGTACAATCACTTCCCTCGTCACCTCAAATGGCAAAACAACAATGTCACATTCAGGATAGTGAATTATACACCAGATCTGAAGAAGTCTGATGTAGACAGAGCCATCCGCAATGCGCTGAACGTTTGGTCTGATGTCACCCCTCTGATCTTTAAGAAGCTGCACAAAGGCATTGCTGACATTATGATCAGTTTTGGAGCAaaagAGCATGGAGATTACAACCCTTTTGATGGGCCTAATGGATTGCTGGCTCATGCCTACCCACCCGGCCAAGGTCTCGGAGGAGACACTCACTTTGATGAGGATGAAAATTGGACAAAAGATTCATCAGCTTACAACCtgtttgtagtggcggcccatgAGTTGGGCCACGCCCTCGGTATGTCCCACTCGTCAGATGCCGGCGCCCTGATGTACCCCATCTACTCATACACTACAGGCTACCCACTGGCTGAGGATGACATTGAAGGCATTCAAGCTCTCTACGGCCCAAACCCAAACCCaagaaaagtgaagccaaagccTGATGCACCAAACAAATGTGACCCCATGTTAAGTTTTGATGCTGTTACCGAGCTCAGAGGGGAAACCATCATCTTCAAAGACAGATTCTACTGGCGTCTTCATCCTCAGATGCCGGAGCCTGAGCAAACACTAATCAAGTCCACGTGGCCCACCATCCCCAACAAGGTGGACGCAGCATACGAGAATCCAGAGAAGGATCTTGTCATCATATTTAGTGGGATCCAGATGTGGGCTTTGAATGGATATAACCTTGTGAATGGTTATCCAAAGTACATACACAAACTTGGTCTTCccaagaaaataagaaaaatagatGCAGCTGTGCACATTGGAGACACCGGGAAAACTCTGCTCTTTACTGATGAGGACTATTGGAGCTATGATGAAGCAGCAGGCACCATGGACAGCGGTTACCCACGATCCATTGAGGAAGATTTTCCTGGGATGGATGACGAGTTTGACGCAGCTGCTTATCACTATGgATTCTTGTATTTCTTCCATGAACACATGCAGTACGAGTACAGTTACACCTCAAGGAAGGTCATTCGCATCATGAGGACCAACTCCATTCTGAACTGCTGATGAGGTGGTCTACAACCGACAGTGATGGCATCAAAAATATATGTTGCTGCATCATGGCACACAACACATCTCCGcaataaacaaaatacacaaatgttaaaaatggAACATAGGAAGATGCAGTTCATTGAATGAGCAAGGAAATGGAGACATGCAGGGTTGACCTGTTACagttaaagtttattttttactagTGCTGGACACCTGTAGGTTATAAAGTATAATGTGTCAGAAATAGAATGCTGGAAAATTCCTCAGAGATATATTTCCTCAGATTATTGCTATTTATTTTACATCTTTATATTTGTACTACAAGTGTCTCTATGGACAGCAAGATCCTTAGCAGGTTAAGTTTCTTGTCAGTGACGGTTTAGCTGTTTTGTAAGCTCATTGTTTGACTACGTGTTTAACTAACATAGTATTTCAACAGAGGGCGCAGCAGTTTAATattttcttgttgttgtttttagatTTTTGTAAATTGTGTGAATTACAATAAAAGCAGAGAAATGAAA

Function

symbol description
mmp13 Enables collagen binding activity; metal ion binding activity; and metalloendopeptidase activity. Involved in bone morphogenesis; collagen catabolic process; and extracellular matrix disassembly. Predicted to be located in extracellular space. Predicted to be part of collagen trimer. Implicated in anodontia; artery disease (multiple); osteoarthritis; ovarian carcinoma; and spondyloepimetaphyseal dysplasia, Missouri type. Biomarker of invasive ductal carcinoma; reproductive organ cancer (multiple); and urinary bladder cancer.

NR:

description
collagenase 3

GO: NA

KEGG:

id description
K07994 MMP13; matrix metalloproteinase-13 (collagenase 3)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825479.1 True 1943 mRNA 0.45 11 21754393 21758179

Neighbor

gene id symbol gene type direction distance location
gucy2f LOC103357218,LOC100708779 coding downstream 22250 21720989 ~ 21732143 (-)
LOC120572601 NA coding downstream 143755 21608044 ~ 21610638 (-)
dhx40 dhx40 coding downstream 146653 21600529 ~ 21607740 (-)
akt2 akt2,LOC100707971 coding downstream 154394 21580379 ~ 21599999 (-)
LOC120553405 cntd2 coding downstream 176532 21573329 ~ 21577861 (-)
siae NA coding upstream 29361 21787540 ~ 21794944 (-)
srpra srpra coding upstream 286002 22044181 ~ 22053600 (-)
kcnj5 kcnj5 coding upstream 393158 22151337 ~ 22179661 (-)
fli1 fli1,LOC106612965,LOC103145351,LOC106905187 coding upstream 441955 22200134 ~ 22233779 (-)
smtla NA coding upstream 589132 22347311 ~ 22352582 (-)
G18626 NA non-coding downstream 58671 21632980 ~ 21695722 (-)
G18631 samsn1,LOC102311369,LOC107374247 non-coding downstream 101527 21651703 ~ 21652866 (-)
G18591 NA non-coding downstream 170990 21527455 ~ 21583403 (-)
LOC120572042 NA non-coding downstream 221638 21529997 ~ 21532755 (-)
G18492 NA non-coding downstream 343194 21410908 ~ 21411199 (-)
G18669 NA non-coding upstream 61810 21819989 ~ 21878764 (-)
G18758 NA non-coding upstream 389860 22148039 ~ 22148297 (-)
G18770 NA non-coding upstream 430084 22188263 ~ 22188687 (-)
G18795 NA non-coding upstream 524824 22283003 ~ 22286209 (-)
G18803 NA non-coding upstream 606092 22364271 ~ 22364495 (-)
gdpd5b gdpd5,LOC103357216 other downstream 44030 21664076 ~ 21710363 (-)
LOC120572205 NA other downstream 139147 21610814 ~ 21615246 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other downstream 492470 21237188 ~ 21261923 (-)
si:ch1073-340i21.1 NA other downstream 657192 21094177 ~ 21097201 (-)
LOC120547993 NA other downstream 1612855 20137072 ~ 20141538 (-)
LOC120551419 LOC100709410,LOC102313657,LOC102784399,LOC102206705,LOC101487802,LOC104941978 other upstream 225123 21983302 ~ 22007175 (-)
G18885 gramd1b other upstream 1381034 23139213 ~ 23148515 (-)
G18948 LOC103474743 other upstream 1488424 23246603 ~ 23252420 (-)
LOC120574680 NA other upstream 1695368 23453547 ~ 23461044 (-)
atm atm,LOC102794456 other upstream 1971309 23729488 ~ 23758826 (-)

Expression


Co-expression Network