psph (psph,LOC102797258)


Basic Information

Item Value
gene id psph
gene name psph,LOC102797258
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29945233 ~ 29951475 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825667.1
AACGGGTGGTCCCTCACCGGCTTCCCTCTGATTGGTCCAGCATTCAACAATTCTCTTCCTCATCGGTGAGCCCATTCGGCTCTGTCTGTGATTCGGGTCGGCTAATTGAATTGAAGCTGCTTGTATAGTGCCTTACCAACGCTGCATTCACCAtaAGATggcaacactttcacagacaaagGAACTCTTCCGGAGAGCAGAAGCTGTCTGTTTCGATGTGGACAGCACAGTCATCAAAGAAGAAGGCATAGATGAACTTGCCAAATTTTGTGGTGTGGGGGATGCAGTCACTGAAATGACTCGCAAAGCTATGGGCGGATCAATGACATTTAAAACAGCGCTGACTGAGCGTCTTTCCATCATCCGATGTTCCAGAGAACAAGTGAACAAACTGATAACCGACCACCCACCTCAACTGACTCCAGGTATCAGTGAGCTTGTGGACCGTCTGCACCAGCGCAACATAAAGGTGTTCCTCATCTCAGGTGGATTCCGCTGCATTGTTGAACACGTGGCCACTCAGCTAAACATTCCTCTGCATCATGTCTACGCCAACCGGCTCAAGTTCTACTTCAACGGAGAGTATGCTGGTTTTGACGAGAGCCAGCCCACAGCTGAGAGTGGTGGAAAAGGAAAGGTCATCAGCATGTTGAAGGAACAATACGGCTTCAAGACTGTGGTGATGATTGGCGATGGAGCCACGGATCTAGAGGCATGCCCTCCTGCCagtgCTTTCATTGGATTTGGTGGAAATGTCGTCAGGCAGCAGGTTAAGGAGAGGTCATTGTGGTACGTGACAAGTTTCGGGGAGCTGCTAAAGGAACTGGAAGTGATTTAAAGAAGCTAatagtactgttactgagtttaacattttatatttgCACCTAAGGATGTGCCTCTGATGGTTTGATCCCCTGCGCGCACAATTTTCCTTCTACATGTACTCAATAGATTTTTATAATGAATGGAAATGTTTACAATAGTGAGACCAATTTTACCTATTGATTTTTATACTAGAAGATACTAAACAAATAACTGTATGTGGAGGATAAGATTTAAGTGCTTTACGCACTTTTTGCATCAAAGCCTATAGGTAAGTTAATACAACTCCTGCATCATATAAGGTGCAATGAGCaatagaaatattttatttctgtatgtatggACACTACGAGCTCTAACCATACATGTCAATGTGTAGTTAAGTCCAGTAAAGAACATCAGCATTAAACATGAGAACATGCTGTCAAA
>XM_039825676.1
CTGATTGGTCCAGCATTCAACAATTCTCTTCCTCATCGGTGAGCCCATTCGGCTCTGTCTGTGATTCGGGTCGGCTAATTGAATTGAAGCTGCTTGTATAGTGCCTTACCAACGCTGCATTCACCAGCTGCTTTATGTAACGCATTTTGTCACACACCAGTGGACCGGGACACGTGTTTTATTTGGGATTCGTCGATGCAGAAACGTTTGCACATAGtaAGATggcaacactttcacagacaaagGAACTCTTCCGGAGAGCAGAAGCTGTCTGTTTCGATGTGGACAGCACAGTCATCAAAGAAGAAGGCATAGATGAACTTGCCAAATTTTGTGGTGTGGGGGATGCAGTCACTGAAATGACTCGCAAAGCTATGGGCGGATCAATGACATTTAAAACAGCGCTGACTGAGCGTCTTTCCATCATCCGATGTTCCAGAGAACAAGTGAACAAACTGATAACCGACCACCCACCTCAACTGACTCCAGGTATCAGTGAGCTTGTGGACCGTCTGCACCAGCGCAACATAAAGGTGTTCCTCATCTCAGGTGGATTCCGCTGCATTGTTGAACACGTGGCCACTCAGCTAAACATTCCTCTGCATCATGTCTACGCCAACCGGCTCAAGTTCTACTTCAACGGAGAGTATGCTGGTTTTGACGAGAGCCAGCCCACAGCTGAGAGTGGTGGAAAAGGAAAGGTCATCAGCATGTTGAAGGAACAATACGGCTTCAAGACTGTGGTGATGATTGGCGATGGAGCCACGGATCTAGAGGCATGCCCTCCTGCCagtgCTTTCATTGGATTTGGTGGAAATGTCGTCAGGCAGCAGGTTAAGGAGAGGTCATTGTGGTACGTGACAAGTTTCGGGGAGCTGCTAAAGGAACTGGAAGTGATTTAAAGAAGCTAatagtactgttactgagtttaacattttatatttgCACCTAAGGATGTGCCTCTGATGGTTTGATCCCCTGCGCGCACAATTTTCCTTCTACATGTACTCAATAGATTTTTATAATGAATGGAAATGTTTACAATAGTGAGACCAATTTTACCTATTGATTTTTATACTAGAAGATACTAAACAAATAACTGTATGTGGAGGATAAGATTTAAGTGCTTTACGCACTTTTTGCATCAAAGCCTATAGGTAAGTTAATACAACTCCTGCATCATATAAGGTGCAATGAGCaatagaaatattttatttctgtatgtatggACACTACGAGCTCTAACCATACATGTCAATGTGTAGTTAAGTCCAGTAAAGAACATCAGCATTAAACATGAGAACATGCTGTCAAA
>XM_039825682.1
GGTTAGGAGACCTCTACTGCGTAGGCTACTGTACAGTTTAACAATTAAATCATTCAGCTGCTGAAAATCACAGACCTCACGTTTTACCATCACCTCGGGACCCTGCTTATTAGATTTACCTTCACATAACTTCCTAATAGCACGATGCCTTACATTAAGCTATtaAGATggcaacactttcacagacaaagGAACTCTTCCGGAGAGCAGAAGCTGTCTGTTTCGATGTGGACAGCACAGTCATCAAAGAAGAAGGCATAGATGAACTTGCCAAATTTTGTGGTGTGGGGGATGCAGTCACTGAAATGACTCGCAAAGCTATGGGCGGATCAATGACATTTAAAACAGCGCTGACTGAGCGTCTTTCCATCATCCGATGTTCCAGAGAACAAGTGAACAAACTGATAACCGACCACCCACCTCAACTGACTCCAGGTATCAGTGAGCTTGTGGACCGTCTGCACCAGCGCAACATAAAGGTGTTCCTCATCTCAGGTGGATTCCGCTGCATTGTTGAACACGTGGCCACTCAGCTAAACATTCCTCTGCATCATGTCTACGCCAACCGGCTCAAGTTCTACTTCAACGGAGAGTATGCTGGTTTTGACGAGAGCCAGCCCACAGCTGAGAGTGGTGGAAAAGGAAAGGTCATCAGCATGTTGAAGGAACAATACGGCTTCAAGACTGTGGTGATGATTGGCGATGGAGCCACGGATCTAGAGGCATGCCCTCCTGCCagtgCTTTCATTGGATTTGGTGGAAATGTCGTCAGGCAGCAGGTTAAGGAGAGGTCATTGTGGTACGTGACAAGTTTCGGGGAGCTGCTAAAGGAACTGGAAGTGATTTAAAGAAGCTAatagtactgttactgagtttaacattttatatttgCACCTAAGGATGTGCCTCTGATGGTTTGATCCCCTGCGCGCACAATTTTCCTTCTACATGTACTCAATAGATTTTTATAATGAATGGAAATGTTTACAATAGTGAGACCAATTTTACCTATTGATTTTTATACTAGAAGATACTAAACAAATAACTGTATGTGGAGGATAAGATTTAAGTGCTTTACGCACTTTTTGCATCAAAGCCTATAGGTAAGTTAATACAACTCCTGCATCATATAAGGTGCAATGAGCaatagaaatattttatttctgtatgtatggACACTACGAGCTCTAACCATACATGTCAATGTGTAGTTAAGTCCAGTAAAGAACATCAGCATTAAACATGAGAACATGCTGTCAAA
>XM_039825690.1
TCCCTCTGATTGGTCCAGCATTCAACAATTCTCTTCCTCATCGGTGAGCCCATTCGGCTCTGTCTGTGATTCGGGTCGGCTAATTGAATTGAAGCTGCTTGTATAGTGCCTTACCAACGCTGCATTCACCAATggcaacactttcacagacaaagGAACTCTTCCGGAGAGCAGAAGCTGTCTGTTTCGATGTGGACAGCACAGTCATCAAAGAAGAAGGCATAGATGAACTTGCCAAATTTTGTGGTGTGGGGGATGCAGTCACTGAAATGACTCGCAAAGCTATGGGCGGATCAATGACATTTAAAACAGCGCTGACTGAGCGTCTTTCCATCATCCGATGTTCCAGAGAACAAGTGAACAAACTGATAACCGACCACCCACCTCAACTGACTCCAGGTATCAGTGAGCTTGTGGACCGTCTGCACCAGCGCAACATAAAGGTGTTCCTCATCTCAGGTGGATTCCGCTGCATTGTTGAACACGTGGCCACTCAGCTAAACATTCCTCTGCATCATGTCTACGCCAACCGGCTCAAGTTCTACTTCAACGGAGAGTATGCTGGTTTTGACGAGAGCCAGCCCACAGCTGAGAGTGGTGGAAAAGGAAAGGTCATCAGCATGTTGAAGGAACAATACGGCTTCAAGACTGTGGTGATGATTGGCGATGGAGCCACGGATCTAGAGGCATGCCCTCCTGCCagtgCTTTCATTGGATTTGGTGGAAATGTCGTCAGGCAGCAGGTTAAGGAGAGGTCATTGTGGTACGTGACAAGTTTCGGGGAGCTGCTAAAGGAACTGGAAGTGATTTAAAGAAGCTAatagtactgttactgagtttaacattttatatttgCACCTAAGGATGTGCCTCTGATGGTTTGATCCCCTGCGCGCACAATTTTCCTTCTACATGTACTCAATAGATTTTTATAATGAATGGAAATGTTTACAATAGTGAGACCAATTTTACCTATTGATTTTTATACTAGAAGATACTAAACAAATAACTGTATGTGGAGGATAAGATTTAAGTGCTTTACGCACTTTTTGCATCAAAGCCTATAGGTAAGTTAATACAACTCCTGCATCATATAAGGTGCAATGAGCaatagaaatattttatttctgtatgtatggACACTACGAGCTCTAACCATACATGTCAATGTGTAGTTAAGTCCAGTAAAGAACATCAGCATTAAACATGAGAACATGCTGTCAAA

Function

symbol description
psph Predicted to enable magnesium ion binding activity and phosphoserine phosphatase activity. Predicted to be involved in L-serine biosynthetic process and dephosphorylation. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in PSPH deficiency. Orthologous to human PSPH (phosphoserine phosphatase).

NR:

description
PREDICTED: phosphoserine phosphatase isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0004647 phosphoserine phosphatase activity molecular_function

KEGG:

id description
K01079 serB, PSPH; phosphoserine phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825667.1 False 1251 mRNA 0.44 6 29945233 29951475
XM_039825676.1 True 1315 mRNA 0.44 7 29945233 29951448
XM_039825682.1 False 1261 mRNA 0.43 6 29945233 29951035
XM_039825690.1 False 1225 mRNA 0.44 6 29945233 29951453

Neighbor

gene id symbol gene type direction distance location
elna NA coding downstream 56170 29830487 ~ 29889063 (-)
limk1a limk1,LOC100693040,LOC102194872,LOC101472506,LOC102798153,LOC102292112 coding downstream 115856 29775525 ~ 29829377 (-)
sept4b LOC103353393,LOC102798639,LOC102292831,LOC102194568,LOC101473185 coding downstream 173894 29720016 ~ 29771339 (-)
aifm4 LOC104966742 coding downstream 418911 29519140 ~ 29526322 (-)
trnaw-cca NA coding downstream 432513 29512649 ~ 29512720 (-)
LOC120575091 phkg1 coding upstream 4031 29955506 ~ 29963599 (-)
chchd2 chchd2 coding upstream 12382 29963857 ~ 29966571 (-)
grik4 grik4 coding upstream 266705 30218180 ~ 30552502 (-)
tlcd5a tmem136,LOC104967126,LOC102792095 coding upstream 669827 30621302 ~ 30625183 (-)
oafa oaf coding upstream 674280 30625755 ~ 30642314 (-)
G20548 gbas,LOC104966759,LOC102797551,LOC100692767 non-coding downstream 1335 29936881 ~ 29943898 (-)
LOC120575052 NA non-coding downstream 16282 29924397 ~ 29928951 (-)
G20541 NA non-coding downstream 36830 29908177 ~ 29908403 (-)
G20526 NA non-coding downstream 251772 29693206 ~ 29693461 (-)
G20482 NA non-coding downstream 282454 29661547 ~ 29662779 (-)
G20604 NA non-coding upstream 114942 30066417 ~ 30069192 (-)
G20607 NA non-coding upstream 129647 30081122 ~ 30081399 (-)
LOC120572323 NA non-coding upstream 150534 30102009 ~ 30102884 (-)
G20637 NA non-coding upstream 187779 30139254 ~ 30141767 (-)
G20651 LOC103376870 non-coding upstream 264322 30215797 ~ 30216042 (-)
G20417 scarf1 other downstream 496578 29447170 ~ 29448655 (-)
cwf19l2 cwf19l2 other downstream 2097685 27824605 ~ 27847548 (-)
G19840 NA other downstream 2856169 27088606 ~ 27089064 (-)
cul3b cul3,LOC104924156,LOC100710156,LOC107099750,LOC108240497,LOC104940878,LOC103474461,LOC108428259,LOC102194569,LOC101170875 other downstream 3475337 26451380 ~ 26469896 (-)
LOC120570434 fam124b other downstream 3499298 26434281 ~ 26445935 (-)
im:7138535 NA other upstream 15954 29967429 ~ 29972350 (-)
rnf26 rnf26 other upstream 136260 30087735 ~ 30091711 (-)
cbl cbl other upstream 203418 30154893 ~ 30198071 (-)
arhgef12a arhgef12 other upstream 617398 30568873 ~ 30618434 (-)
spa17 spa17,LOC103353395,LOC106919647,LOC107380342,LOC100697535 other upstream 734736 30686211 ~ 30696629 (-)

Expression


Co-expression Network