LOC120575210 (tcaf2)


Basic Information

Item Value
gene id LOC120575210
gene name tcaf2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19892542 ~ 19906151 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825895.1
CGTTGGGTTGTTCTGAGTGAAGTCCTTCCTCTTATTGTATTTACCTTTTGTTGACTGAAACAGTCCCTACTGCTCTTGCTCTCATTTATATgcacttttcttttctgtcaggAAGTGTTATTGGAGCATTGCCTGTTTGACAAGCTGTGTCACACAGTGTAATTATACAAGCAACAAGCCAACTTAACTTTCAGAACTTCCGAGAATTGATCCATCTCACCATGTCCAACCAGCCCatccaaaataaaaatgaaggGGCCTACATGTCCCTGATGAGAGGCTTGAGAGAGCTGGACTTCCAGGGCCCCTGTGTTCCCAGTGACCTGGTGCTAATTGGAGACCATGCATTTCCTTTAGCAATGAACGGCCGAGGACAGGTCCTGATGGCAGCCTCTCTGTACGGCCGTGGAAGGATCGTGGTTCTGGGTCATGAGGGCTACCTGACCGCGTTTCCTGCTCTGGTAGAGAACGCTCTGACCTGGCTGAGAGGAGATGGATCTGACAACCTGTCTGTGGGGATCCACGAAAACATCAAGGCAGTTGCTGATAAAATCAGCAAATCCAGCTTCCAAGCCAAAGTTGTGGGGGCCTTCAGTGGCAATCTGGGGgtgggtgtgtatgtgacaGATGCCTACAGCGTGGGTGCTGACGTGAAGGACCTGGTGGCATTTCTGAAAGCTGGAGGAGGAGTGCTGATAGCGGGCCAGGCATGGAGCTGGGCTGAAATGCACCCTAAGGAGAACACGCTGCTTCAGTTTGAGGGGAATAAGGTTGCTGGTGTGGCAGGGATCTACTTCTCTAAACATCAGGTGGAGGTAGAGTGCCTGCCTGTCTACCCACAGATCCCATCTTCATGGATGGCTAGAGTAATCAGTAAGGATTTTGAGGACGACTTAGAGTTCTTACTCCAAGGGGTGTCAGAGTTTGACCTCCAGAATGGGGTAGTAGCTTCTGAGCTTCTGGTCCACGGCTCACTAGCCTTCCCAATAGGTACCACCGAGGATGGCCGAGTGTTCTTGGCAGGAGCCTTCTATGGGCAGGGACGAGTTGTTGTGATTACACATGAAGGACTTCTGAGACGAGAGACACTGGCTCCATTTTGGAACAATGCCATTCATTGGTTGGACGAAGGCCGAAATGGGGTTGTCGGAGTAGTTCCAGATCTCAACGAAGCCTTTAACCTCTTCAGCAAGTCAGACTTTACGTGTGAGAAGACAAACTTCAGGGAAGACctgagtgtatttgtgtgtacagCGTATAGCGATGCACATGTGAAGGAAATACAAGATTTTGTGGCAGAGGGAGGAGGCCTGCTGATTGGTGGACATGCCTGGTACTGGGCACAGACACACCCTGGGCAAAACCCAATCACAGATTTCACAGGAAACAAGATCCTGAACAAAATGGGCTTGAGCCTGCTGGAGAAATACATTGGTGAAGGTTCCTACAAGGCCCCTGTGCCTAGCCAGGCAATCAAAGACGCCTACCACTTCCGCCACCTTCTACACCGCTTTGCTGGTCATGTCACAGAGGGGGAAGAACTtacagagcaggaggaggaataTCTAAAAAAACTGAGTGGGGACTGCATCACCTACTTGCAAATGAAGGCTCACGACTGCTCCTCCTATACACAGGTCGTTTCCACACTCAGCGGCATCTTGAAGAAGTCCGGCATGCCACAGGTGTGTGACAGCTCCCCTGTGAAGAGTCCCAGGGACCACTTACTCCTTAGTTTAGGGGCAGAAGTATATAAGGTTTGCCCAGATCCTGATGCCCTCCTGCCCTACCTTATTAAGGATAATCCCTTGATGCCAGTTGTCTATAACTACAGAATCAAGATTAATGCTAACACAGCAGgaGGGGAGGAGTGGATCAGTACAGGTCTCTACCTGTCCCCTGGTATGAAGACCTACATAGCCGTGCCAGCAGCGATTGTCACCCAGGGATGGAAGGTTCAGATAGGCTGTCAAACAGACAGACTACATGCTGAAGAATTGAAGAGAGCACCGTGTGTTCATGTGCAATTTCCTGTTACCTCAGAGATGATACAAGTGTGGAACCTGTGGGGGGGACTCATCTACCTGGTGGCTCCACCCAATACACAAGTGGAGGGGCTAAAGGTCACAGTGCAGATGGCTGTACCTGCGCCTTACTATAAATCTGGTGTGACAACAGCTGCTGATTGGTTGTTGGTGCGCACAGCTCCCTCCCCCTGGGCAGAGTTGGAGTTTGACAACATCATCCTTACTGTACCATCAGATGTTGTCCGGAGCCTGGATCGCCCTGATGAGTTGGCGGCACATTGGAATGACATCATGAGGGGCATTGCTGACCTAGCTGCCATACCACACAAATTTCCTCGCAAAGAACGTTTTGTTACTGATGTGCAGATTTCCCATGGTTGGATGCATGCTGGTTATCCTATCATGACACACAAGTCCATAGCAGCTGAGCTGGTCAGCACTGTCCATACTGGGAGTGAAGGCCTGTGGGGACCTATCCATGAACTGGGACACAACCAACAAAGAGCCTGCTGGGAGTTCCCACCACACACCACAGAGTGTACATGCAACCTGTGGTCAGTGTATGTGCATGAAGAGGTGCTGGGGATCAATGGAATAATCAGTCCAGCACAAAGGAATACTCATGCAGAAGATTATGCTAAGGGCGGCAGGAAACTCAGCAACTGGCACGTGTTTGTGGCCCTGGAGACATATTTGCAGCTCCGGGATAAGTTTGGTTGGGATGCCTTTAAGAAGGTGTTCGCTGCCTACCACAAGATGAGCAACTTTCCGAGTGACAATGATGGAAAGATGAATCTGTATGCTGAGACTTTCTCCCAGACTGTGGGGATGAACCTGGCTGGATTCTTTAAGGCCTGGGGCTGGCCCATACAAACAGTCACTGAGGAGAAACTCTCCAACCTGCCTCCCTGGACTGACCACCCGATGGTCCAGTATGACTGAACTTCAGACTGCTGCTGGTTAAAAGTGGAGAGAGATGGGTTCAATAAGAACATTATTGACACTGAGTATTTAGTGGGTAATTCAAttaactgacttttttttcttttttgttgttgtgttgtatcATATTTGTTTCAATATTTTAAAGAAGAAACATGAGTTACATAGTTGACCAGATATATACAGCTTTTAAATTCAGTAGCTCCATTTGAGAAAAATCTGTTTTTAGTGTTAATGATTCATGTGAGTTTGGGAaggtaattgtttttgtttctatATGTAATGATGGTAAGTGATTCAGACTGTTTATGAGATGAATAACACATTTACTATTTGTttatgttaacattttattttatcgtCACTGGAAAATATACCAATAAACATTCACTTCAC
>XM_039825903.1
CGTTGGGTTGTTCTGAGTGAAGTCCTTCCTCTTATTGTATTTACCTTTTGTTGACTGAAACAGTCCCTACTGCTCTTGCTCTCATTTATATgcacttttcttttctgtcaggAAGTGTTATTGGAGCATTGCCTGTTTGACAAGCTGTGTCACACAGTGTAATTATACAAGCAACAAGCCAACTTAACTTTCAGTTTTCTTTTGccatcctctctccttctcatcAGAACTTCCGAGAATTGATCCATCTCACCATGTCCAACCAGCCCatccaaaataaaaatgaaggGGCCTACATGTCCCTGATGAGAGGCTTGAGAGAGCTGGACTTCCAGGGCCCCTGTGTTCCCAGTGACCTGGTGCTAATTGGAGACCATGCATTTCCTTTAGCAATGAACGGCCGAGGACAGGTCCTGATGGCAGCCTCTCTGTACGGCCGTGGAAGGATCGTGGTTCTGGGTCATGAGGGCTACCTGACCGCGTTTCCTGCTCTGGTAGAGAACGCTCTGACCTGGCTGAGAGGAGATGGATCTGACAACCTGTCTGTGGGGATCCACGAAAACATCAAGGCAGTTGCTGATAAAATCAGCAAATCCAGCTTCCAAGCCAAAGTTGTGGGGGCCTTCAGTGGCAATCTGGGGgtgggtgtgtatgtgacaGATGCCTACAGCGTGGGTGCTGACGTGAAGGACCTGGTGGCATTTCTGAAAGCTGGAGGAGGAGTGCTGATAGCGGGCCAGGCATGGAGCTGGGCTGAAATGCACCCTAAGGAGAACACGCTGCTTCAGTTTGAGGGGAATAAGGTTGCTGGTGTGGCAGGGATCTACTTCTCTAAACATCAGGTGGAGGTAGAGTGCCTGCCTGTCTACCCACAGATCCCATCTTCATGGATGGCTAGAGTAATCAGTAAGGATTTTGAGGACGACTTAGAGTTCTTACTCCAAGGGGTGTCAGAGTTTGACCTCCAGAATGGGGTAGTAGCTTCTGAGCTTCTGGTCCACGGCTCACTAGCCTTCCCAATAGGTACCACCGAGGATGGCCGAGTGTTCTTGGCAGGAGCCTTCTATGGGCAGGGACGAGTTGTTGTGATTACACATGAAGGACTTCTGAGACGAGAGACACTGGCTCCATTTTGGAACAATGCCATTCATTGGTTGGACGAAGGCCGAAATGGGGTTGTCGGAGTAGTTCCAGATCTCAACGAAGCCTTTAACCTCTTCAGCAAGTCAGACTTTACGTGTGAGAAGACAAACTTCAGGGAAGACctgagtgtatttgtgtgtacagCGTATAGCGATGCACATGTGAAGGAAATACAAGATTTTGTGGCAGAGGGAGGAGGCCTGCTGATTGGTGGACATGCCTGGTACTGGGCACAGACACACCCTGGGCAAAACCCAATCACAGATTTCACAGGAAACAAGATCCTGAACAAAATGGGCTTGAGCCTGCTGGAGAAATACATTGGTGAAGGTTCCTACAAGGCCCCTGTGCCTAGCCAGGCAATCAAAGACGCCTACCACTTCCGCCACCTTCTACACCGCTTTGCTGGTCATGTCACAGAGGGGGAAGAACTtacagagcaggaggaggaataTCTAAAAAAACTGAGTGGGGACTGCATCACCTACTTGCAAATGAAGGCTCACGACTGCTCCTCCTATACACAGGTCGTTTCCACACTCAGCGGCATCTTGAAGAAGTCCGGCATGCCACAGGTGTGTGACAGCTCCCCTGTGAAGAGTCCCAGGGACCACTTACTCCTTAGTTTAGGGGCAGAAGTATATAAGGTTTGCCCAGATCCTGATGCCCTCCTGCCCTACCTTATTAAGGATAATCCCTTGATGCCAGTTGTCTATAACTACAGAATCAAGATTAATGCTAACACAGCAGgaGGGGAGGAGTGGATCAGTACAGGTCTCTACCTGTCCCCTGGTATGAAGACCTACATAGCCGTGCCAGCAGCGATTGTCACCCAGGGATGGAAGGTTCAGATAGGCTGTCAAACAGACAGACTACATGCTGAAGAATTGAAGAGAGCACCGTGTGTTCATGTGCAATTTCCTGTTACCTCAGAGATGATACAAGTGTGGAACCTGTGGGGGGGACTCATCTACCTGGTGGCTCCACCCAATACACAAGTGGAGGGGCTAAAGGTCACAGTGCAGATGGCTGTACCTGCGCCTTACTATAAATCTGGTGTGACAACAGCTGCTGATTGGTTGTTGGTGCGCACAGCTCCCTCCCCCTGGGCAGAGTTGGAGTTTGACAACATCATCCTTACTGTACCATCAGATGTTGTCCGGAGCCTGGATCGCCCTGATGAGTTGGCGGCACATTGGAATGACATCATGAGGGGCATTGCTGACCTAGCTGCCATACCACACAAATTTCCTCGCAAAGAACGTTTTGTTACTGATGTGCAGATTTCCCATGGTTGGATGCATGCTGGTTATCCTATCATGACACACAAGTCCATAGCAGCTGAGCTGGTCAGCACTGTCCATACTGGGAGTGAAGGCCTGTGGGGACCTATCCATGAACTGGGACACAACCAACAAAGAGCCTGCTGGGAGTTCCCACCACACACCACAGAGTGTACATGCAACCTGTGGTCAGTGTATGTGCATGAAGAGGTGCTGGGGATCAATGGAATAATCAGTCCAGCACAAAGGAATACTCATGCAGAAGATTATGCTAAGGGCGGCAGGAAACTCAGCAACTGGCACGTGTTTGTGGCCCTGGAGACATATTTGCAGCTCCGGGATAAGTTTGGTTGGGATGCCTTTAAGAAGGTGTTCGCTGCCTACCACAAGATGAGCAACTTTCCGAGTGACAATGATGGAAAGATGAATCTGTATGCTGAGACTTTCTCCCAGACTGTGGGGATGAACCTGGCTGGATTCTTTAAGGCCTGGGGCTGGCCCATACAAACAGTCACTGAGGAGAAACTCTCCAACCTGCCTCCCTGGACTGACCACCCGATGGTCCAGTATGACTGAACTTCAGACTGCTGCTGGTTAAAAGTGGAGAGAGATGGGTTCAATAAGAACATTATTGACACTGAGTATTTAGTGGGTAATTCAAttaactgacttttttttcttttttgttgttgtgttgtatcATATTTGTTTCAATATTTTAAAGAAGAAACATGAGTTACATAGTTGACCAGATATATACAGCTTTTAAATTCAGTAGCTCCATTTGAGAAAAATCTGTTTTTAGTGTTAATGATTCATGTGAGTTTGGGAaggtaattgtttttgtttctatATGTAATGATGGTAAGTGATTCAGACTGTTTATGAGATGAATAACACATTTACTATTTGTttatgttaacattttattttatcgtCACTGGAAAATATACCAATAAACATTCACTTCAC

Function

symbol description
tcaf2 Enables transmembrane transporter binding activity. Involved in negative regulation of anion channel activity; positive regulation of cell migration; and positive regulation of protein targeting to membrane. Located in cell junction and plasma membrane.

NR:

description
PREDICTED: protein FAM115C isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825895.1 False 3365 mRNA 0.48 11 19892542 19906151
XM_039825903.1 True 3398 mRNA 0.48 11 19892542 19906151

Neighbor

gene id symbol gene type direction distance location
LOC120575197 NA coding downstream 587 19872479 ~ 19891955 (-)
sars2 sars2,LOC102787987 coding downstream 211522 19671088 ~ 19681020 (-)
LOC120545125 LOC106935408,LOC103155939,LOC106914189,LOC103474854,LOC102218288 coding downstream 221971 19663258 ~ 19670571 (-)
psma6l LOC107094495,LOC106935416,LOC103474855,LOC103155941,LOC100701743,LOC106914191,LOC102789735 coding downstream 238718 19650041 ~ 19653824 (-)
LOC120552636 LOC107395012,LOC103364872,LOC101485936 coding downstream 255140 19633493 ~ 19637402 (-)
LOC120575221 NA coding upstream 7972 19914123 ~ 19925101 (-)
si:ch1073-280e3.1 NA coding upstream 27342 19933493 ~ 19940419 (-)
nudt8 LOC107720444 coding upstream 43067 19949218 ~ 19953810 (-)
pcsk7 pcsk7 coding upstream 84568 19990719 ~ 20009181 (-)
bace1 bace1,LOC102782465 coding upstream 104979 20011130 ~ 20023355 (-)
G18216 NA non-coding downstream 36232 19851904 ~ 19856310 (-)
LOC120548779 coq8b,LOC103364879,LOC107395920,LOC108247334 non-coding downstream 136549 19754887 ~ 19755993 (-)
G18184 NA non-coding downstream 242890 19649216 ~ 19649652 (-)
G18179 NA non-coding downstream 263902 19625403 ~ 19628640 (-)
LOC120573122 NA non-coding downstream 351412 19538375 ~ 19541130 (-)
G18329 cep164 non-coding upstream 147069 20053220 ~ 20054134 (-)
G18337 NA non-coding upstream 210134 20116285 ~ 20119606 (-)
G18366 NA non-coding upstream 278660 20184811 ~ 20258055 (-)
G18367 gap43 non-coding upstream 286729 20192880 ~ 20205688 (-)
G18381 NA non-coding upstream 800370 20706521 ~ 20706785 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other downstream 82412 19800751 ~ 19810130 (-)
fbxo46 fbxo46,LOC102786997 other downstream 175235 19701227 ~ 19717307 (-)
LOC120545639 eif4g1 other downstream 1669649 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 1740574 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 2001881 17799999 ~ 17890661 (-)
LOC120547993 NA other upstream 230921 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 1188026 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 1331037 21237188 ~ 21261923 (-)
LOC120572205 NA other upstream 1704663 21610814 ~ 21615246 (-)
gdpd5b gdpd5,LOC103357216 other upstream 1757925 21664076 ~ 21710363 (-)

Expression


Co-expression Network