sgpp2 (sgpp2,LOC103365078)


Basic Information

Item Value
gene id sgpp2
gene name sgpp2,LOC103365078
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 18398801 ~ 18414141 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826119.1
gtgcaattACGTAGGCCTATATGCCAGGATGCGCTAATTTGGTCAACCGGGGGCGTCAATTCATCTGTCAAAGATCATCTAAACACAATGCTCCAAACAAACATAGGCCTTGtcttacaacacaagggatTAAGTAGAACAATGTTGTTATTCAATCCATAGAAAAAGAGAAGATCTTAATTTGATGATGGAAAATGGATAAATCATGTCAGAATCATTTGGCGTTTAGAGGCTGGCATCTCAGCATGGTGCTGTAGAAAATCACAAATATTTCCTTAGGTTTACATGTTGTAGATCATGTTATGTGTACACTGTTAACAACATTTGTATTAGATATTGCTGCTTTTGGGTTTTCGTAAAGCcttttataatataattataataagcAAATGTGCTCCATATCAACTTTTAAAAGTACCATTATGCTTTTATGGCAGGAATGGCACAAATAGGCCATTGAAAGGGCTCAAACGATCTCAAACCCTGGGGTTAAATCTTAATATTGTGAAATATTCTTCAAACTGTACTCACAATATGTTCTGAAGCTGATGGCTATGCATTCTTATTCATTCTATTTACATCACTGAGACCGTACTATCAGTGAACACAAAGTCCTGATTAGACTTGGGTCAGAGGCCTATGTCCCCTGCTTGATATattactgtattattattatatgcagCTTATAAGTGGTTAATGCACAGTTTCATAACAAGAGGGAAATATAGTTCTAAATTAAGGGGTTGAACACATTGCCAGAGTCCCCTACTGTATAACGACAAAAGTAGTGAGAGTGGATCCTTGAATTGTCATTCTGTCCAATTTGCAGAGTTTATGGTACACATATGAATAAATCCTCTTTTTTTGACACCTTGAGGACCTGCTGAGTGTCCCAGCCAAAAGTCCACTTTCAGAAAGCGAACTCTAAATGTTGCTCTTTTGTGATTTCTTTAACAATTAGCAACCAATTACTGGATCTCTGTTGGTGGGAGATTAATAAGCCTTCAACATCCAAGGTTGACTCTTCATTACCATGATGAACCATCCCAGTATAGTCAGACAAACTTACTACTACTCAAGACAACCTACTGACCTATATTCCTCGGTCTAGCCCCGCCCCCCTGCGCACACCTGTGGCGCACAGCAGCCGCACCTGTACGGAGCCAGCTGCGCCCTGCCTGGGCAAATATCACCTTCCATTACTTCTCCTGCTCTGAACATCCACGGCATCCTGTTCCTGCACTTCTGTCTCTTTCACCTGACATGTTGAAGCTCCTGACTTACCTCCATGACTCGGAGCTCGTGGCCCGGTTCCAGAGACGCTGCGGACTCTTCCTGGTCGAAGCCGCGCATCACAGCCGAGTGAGGTTGAGCGCTCCGAGTGGAACCCCGGTCGACGTACCACGTGGACAGCTGAAGGGAAGATGGGACCACCAGGATAATAATTCAAACTACAAGGAGAATGGATGTTCTGTTGCTGGCTGCAGCAGGCCTCAGTATGAGGTGAGGAACTGGCTTTTGcacttcctcttcctgttcTCGGCAGGCCTGGGGCATGAAATCTTCTACATCACCTGTCTGCCCTGCATACACTGGAGCCTGGACCCATTCCTGTGCCGACGCCTGGTCAACATGTGGTGTTTGGTGATGTACATCGGCCAGGTGATGAAAGATACGCTGAAGCTGCCTCGCCCTATCTCCCCCCCAGTGGTCAAGCTGGAGACACGTGTTGATGCCGAATACGGGCTGCCCTCCACCCACGCCATGGCCGCCACCGCCATCTCCTTCACCGTTTTACTAAGCGCTCCGTCCAGGATACAGTTTCAGTTCGAGGTGGGTCTACTGATCGCACTGACGCTGTCGTCTTTGGTGTGTCTGAGCCGCCTCTACACAGGCATGCACTCAGTTTTGGATGTCATCTGTGGCGCTTTAATCTCAGCTATCATCATGTTCCTCACCTACCCATATTGGGAAACCTTTGACCGTTTCCAGCTCACCAGCCACATCTCTCCCATCGCGGCATTGACACTGCCCCTCTTCCTCAGCTACACATACCCTGAGCTggaccattacaccaccacacGGGGGGATACCACCACCATTCTAGGAGTAGGGGCCGGGTGCTCTGTGGGATACTGGGTGAATGAGCAACTAGGGCAGACTTTTGAGCCCCAGGGGGTGCTACCTGTACCCCTACCCACACTGACAGCACATGCACTGGCACTAGGTGCTGCCCGCTTCGTTGTGGGAGTTTTCGCATTAGTGGGAACTCGGCGGGTTATGAAAACACTGAGCCTGCAGGTGTTGTATTTGTGGTACAGAGTGGCAAAAAATGACGACAGTgccaggaggagaagagagattGAAGTGCCGTATAAGTTTTCCACATATACAGTTGTTGGACTTGTCAATTCTATATTGGTCAATAAAGTATTCATTCTACTGGGACTATTGTGACCTATTAACACAAGACTGCTGTATAATTATCTGAACTTGCCGTAACAAAAATGTACCTCATATTTATTTCAATGTGTATCAAAtttaaggctgcaactaacgattattttcatagtcgatcaatctgttgattattttcttgattattcgattagttgtttggtctctaaaatgtcaga
>XM_039826127.1
GTAGGGAAACGCCGTGGGGGCCTCGCCGGGGGGTTCCGCTCCGTTTGATGCCAAATCTACCTCTGCCATGTCATCTTTCGCCATTCACGTTCTCCggtgaaaacaagaggaagCTGGCGGACAGATGCTGATGACGATGAACCATCCCAGTATAGTCAGACAAACTTACTACTACTCAAGACAACCTACTGACCTATATTCCTCGGTCTAGCCCCGCCCCCCTGCGCACACCTGTGGCGCACAGCAGCCGCACCTGTACGGAGCCAGCTGCGCCCTGCCTGGGCAAATATCACCTTCCATTACTTCTCCTGCTCTGAACATCCACGGCATCCTGTTCCTGCACTTCTGTCTCTTTCACCTGACATGTTGAAGCTCCTGACTTACCTCCATGACTCGGAGCTCGTGGCCCGGTTCCAGAGACGCTGCGGACTCTTCCTGGTCGAAGCCGCGCATCACAGCCGAGTGAGGTTGAGCGCTCCGAGTGGAACCCCGGTCGACGTACCACGTGGACAGCTGAAGGGAAGATGGGACCACCAGGATAATAATTCAAACTACAAGGAGAATGGATGTTCTGTTGCTGGCTGCAGCAGGCCTCAGTATGAGGTGAGGAACTGGCTTTTGcacttcctcttcctgttcTCGGCAGGCCTGGGGCATGAAATCTTCTACATCACCTGTCTGCCCTGCATACACTGGAGCCTGGACCCATTCCTGTGCCGACGCCTGGTCAACATGTGGTGTTTGGTGATGTACATCGGCCAGGTGATGAAAGATACGCTGAAGCTGCCTCGCCCTATCTCCCCCCCAGTGGTCAAGCTGGAGACACGTGTTGATGCCGAATACGGGCTGCCCTCCACCCACGCCATGGCCGCCACCGCCATCTCCTTCACCGTTTTACTAAGCGCTCCGTCCAGGATACAGTTTCAGTTCGAGGTGGGTCTACTGATCGCACTGACGCTGTCGTCTTTGGTGTGTCTGAGCCGCCTCTACACAGGCATGCACTCAGTTTTGGATGTCATCTGTGGCGCTTTAATCTCAGCTATCATCATGTTCCTCACCTACCCATATTGGGAAACCTTTGACCGTTTCCAGCTCACCAGCCACATCTCTCCCATCGCGGCATTGACACTGCCCCTCTTCCTCAGCTACACATACCCTGAGCTggaccattacaccaccacacGGGGGGATACCACCACCATTCTAGGAGTAGGGGCCGGGTGCTCTGTGGGATACTGGGTGAATGAGCAACTAGGGCAGACTTTTGAGCCCCAGGGGGTGCTACCTGTACCCCTACCCACACTGACAGCACATGCACTGGCACTAGGTGCTGCCCGCTTCGTTGTGGGAGTTTTCGCATTAGTGGGAACTCGGCGGGTTATGAAAACACTGAGCCTGCAGGTGTTGTATTTGTGGTACAGAGTGGCAAAAAATGACGACAGTgccaggaggagaagagagattGAAGTGCCGTATAAGTTTTCCACATATACAGTTGTTGGACTTGTCAATTCTATATTGGTCAATAAAGTATTCATTCTACTGGGACTATTGTGACCTATTAACACAAGACTGCTGTATAATTATCTGAACTTGCCGTAACAAAAATGTACCTCATATTTATTTCAATGTGTATCAAAtttaaggctgcaactaacgattattttcatagtcgatcaatctgttgattattttcttgattattcgattagttgtttggtctctaaaatgtcaga
>XM_039826138.1
CTTCTACATCACCTGTCTGCCCTGCATACACTGGAGCCTGGACCCATTCCTGTGCCGACGCCTGGTCAACATGTGTTGGTGATGTACATCGGCCAGGTGATGAAAGATACGCTGAAGCTGCCTCGCCCTATCTCCCCCCCAGTGGTCAAGCTGGAGACACGTGTTGATGCCGAATACGGGCTGCCCTCCACCCACGCCATGGCCGCCACCGCCATCTCCTTCACCGTTTTACTAAGCGCTCCGTCCAGGATACAGTTTCAGTTCGAGGTGGGTCTACTGATCGCACTGACGCTGTCGTCTTTGGTGTGTCTGAGCCGCCTCTACACAGGCATGCACTCAGTTTTGGATGTCATCTGTGGCGCTTTAATCTCAGCTATCATCATGTTCCTCACCTACCCATATTGGGAAACCTTTGACCGTTTCCAGCTCACCAGCCACATCTCTCCCATCGCGGCATTGACACTGCCCCTCTTCCTCAGCTACACATACCCTGAGCTggaccattacaccaccacacGGGGGGATACCACCACCATTCTAGGAGTAGGGGCCGGGTGCTCTGTGGGATACTGGGTGAATGAGCAACTAGGGCAGACTTTTGAGCCCCAGGGGGTGCTACCTGTACCCCTACCCACACTGACAGCACATGCACTGGCACTAGGTGCTGCCCGCTTCGTTGTGGGAGTTTTCGCATTAGTGGGAACTCGGCGGGTTATGAAAACACTGAGCCTGCAGGTGTTGTATTTGTGGTACAGAGTGGCAAAAAATGACGACAGTgccaggaggagaagagagattGAAGTGCCGTATAAGTTTTCCACATATACAGTTGTTGGACTTGTCAATTCTATATTGGTCAATAAAGTATTCATTCTACTGGGACTATTGTGACCTATTAACACAAGACTGCTGTATAATTATCTGAACTTGCCGTAACAAAAATGTACCTCATATTTATTTCAATGTGTATCAAAtttaaggctgcaactaacgattattttcatagtcgatcaatctgttgattattttcttgattattcgattagttgtttggtctctaaaatgtcagaa

Function

symbol description
sgpp2 Orthologous to human SGPP2 (sphingosine-1-phosphate phosphatase 2).

NR:

description
sphingosine-1-phosphate phosphatase 2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K04717 SGPP2; sphingosine-1-phosphate phosphotase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826119.1 True 2636 mRNA 0.46 6 18398802 18413634
XM_039826127.1 False 1736 mRNA 0.52 6 18398802 18414141
XM_039826138.1 False 1071 mRNA 0.49 4 18398801 18408361

Neighbor

gene id symbol gene type direction distance location
acsl3a acsl3 coding downstream 28344 18340612 ~ 18370457 (-)
kcne4 kcne4 coding downstream 61286 18335196 ~ 18337515 (-)
scg2a NA coding downstream 91274 18304115 ~ 18307527 (-)
dhrs12la LOC102209276,LOC100699243,LOC101076961 coding downstream 100041 18288287 ~ 18298760 (-)
psmd2 psmd2,LOC102798368 coding downstream 162285 18224512 ~ 18236516 (-)
pxylp1 pxylp1 coding upstream 362032 18776173 ~ 18797083 (-)
LOC120547915 clstn2 coding upstream 478665 18892806 ~ 19141693 (-)
LOC120552541 NA coding upstream 751247 19165388 ~ 19166277 (-)
LOC120552522 NA coding upstream 753906 19168047 ~ 19169126 (-)
LOC120552531 NA coding upstream 776353 19190494 ~ 19191790 (-)
G17917 farsb,LOC102796683,LOC102210931 non-coding downstream 15262 18383159 ~ 18383539 (-)
G17782 NA non-coding downstream 549782 17844434 ~ 17849019 (-)
G17745 NA non-coding downstream 642369 17756168 ~ 17756432 (-)
G17739 NA non-coding downstream 705533 17692996 ~ 17693268 (-)
G17716 NA non-coding downstream 925855 17472679 ~ 17472946 (-)
G17936 NA non-coding upstream 178834 18592975 ~ 18593673 (-)
G17964 NA non-coding upstream 335057 18749198 ~ 18749401 (-)
G17986 NA non-coding upstream 740821 19154962 ~ 19155251 (-)
G18002 NA non-coding upstream 816778 19230919 ~ 19234457 (-)
G18127 NA non-coding upstream 969262 19383403 ~ 19405361 (-)
LOC120545639 eif4g1 other downstream 175908 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 246833 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 508140 17799999 ~ 17890661 (-)
xaf1 LOC107094331 other downstream 919898 17472947 ~ 17478903 (-)
G17597 NA other downstream 1467807 16848161 ~ 16930994 (-)
fbxo46 fbxo46,LOC102786997 other upstream 1287086 19701227 ~ 19717307 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other upstream 1386610 19800751 ~ 19810130 (-)
LOC120547993 NA other upstream 1722931 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 2680036 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 2823047 21237188 ~ 21261923 (-)

Expression


Co-expression Network