LOC120543595 (LOC108245180)


Basic Information

Item Value
gene id LOC120543595
gene name LOC108245180
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11024987 ~ 11025980 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636373.1
GGTCCCAAGACTGTTGGGGTTGTACAAAGCAGCAACCAAGTCTGGAAAGAAGCAATCACTCAAGGACATTTTGGACTGCCTTCAGAAAGATGACACAAatgagaggaggaggactgCTGCTTTGCATAGTCTGCCGCACTACATATCGGGCGAAGATCCATCAGCTGTCATCAGGATGTGTAATGCTCATGGAGAGACTCTGGATGAAGCCATGAAGGGGATGCAACTTGGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC108245180

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636373.1 True 232 lncRNA 0.49 3 11024987 11025980

Neighbor

gene id symbol gene type direction distance location
si:cabz01090165.1 LOC100707198,LOC102192222 coding downstream 457596 10493115 ~ 10567391 (-)
LOC120574326 NA coding downstream 672148 10342382 ~ 10352839 (-)
LOC120551206 NA coding downstream 682329 10257611 ~ 10342658 (-)
LOC120551203 NA coding downstream 776916 10227228 ~ 10248071 (-)
zgc:162698 tmem87a,LOC101066087 coding downstream 846189 10153891 ~ 10178798 (-)
LOC120547527 LOC103361823,LOC107379843,LOC108244675 coding upstream 470192 11496172 ~ 11501340 (-)
gdpd4a LOC102208771,LOC101483676,LOC102301321,LOC100692992,LOC103373497 coding upstream 594691 11620671 ~ 11642942 (-)
pak1 pak1,LOC100698864,LOC101483196 coding upstream 673919 11699899 ~ 11793201 (-)
capn5a capn5,LOC100709916,LOC102310670,LOC106535735 coding upstream 787299 11813279 ~ 11865934 (-)
dcun1d5 LOC106964839,LOC103138233,LOC106911103,LOC103475081,LOC108248937,LOC103377933 coding upstream 861509 11887489 ~ 11906289 (-)
G16164 NA non-coding downstream 471012 10501535 ~ 10553975 (-)
G16162 NA non-coding downstream 519655 10469815 ~ 10505332 (-)
LOC120547199 NA non-coding downstream 573874 10443726 ~ 10451113 (-)
G16136 NA non-coding downstream 648176 10353195 ~ 10376811 (-)
G16137 NA non-coding downstream 651707 10363132 ~ 10373280 (-)
LOC120549056 NA non-coding upstream 66932 11092912 ~ 11102774 (-)
G16174 NA non-coding upstream 107124 11133104 ~ 11133336 (-)
G16175 NA non-coding upstream 145656 11171636 ~ 11171843 (-)
G16179 NA non-coding upstream 237348 11263328 ~ 11263778 (-)
G16182 NA non-coding upstream 269609 11295589 ~ 11295953 (-)
G16143 LOC103372137,LOC102304476 other downstream 600217 10373568 ~ 10424770 (-)
LOC120574316 NA other downstream 694140 10318834 ~ 10330847 (-)
LOC120574297 NA other downstream 823403 10184003 ~ 10201584 (-)
G16064 NA other downstream 875416 10140176 ~ 10149571 (-)
G16066 NA other downstream 886640 10136688 ~ 10138347 (-)
G16407 cul5,LOC101165410,LOC108248946 other upstream 923357 11949337 ~ 11955578 (-)
G16422 NA other upstream 963038 11989018 ~ 12033762 (-)
G16458 NA other upstream 1199079 12225059 ~ 12262775 (-)
LOC120554324 NA other upstream 1461037 12487017 ~ 12487180 (-)
LOC120554526 NA other upstream 1462893 12488873 ~ 12489063 (-)

Expression


Co-expression Network