LOC120544074


Basic Information

Item Value
gene id LOC120544074
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8531244 ~ 8534741 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636438.1
GTGAGTCCTTAAACTTTCGGCCAGCATGTGACCTGAAGCTGGTCTCTAATTGGTTTCTTAAAGATTCTCCTCCGGACGCACCTCGCTGCGTCCCTGGCAAATCAGAATTGGAGATATGTTATTTTatccaatctgattggttctcAACACCTGTCATTCAACTCTTCCCCCGGCCGCTACTGGAGAGTGAACGTGGACACAATAGTAGCGCCAGCAGGTAGCTCCTGTGTTGTTGAAATGGTCTAACCACTTTGATTAAAGTAGGAAACTAGCAACAATAAACAAGGAGAGATTCTTGAAAGGGTGAAAGAGAAGTTATACAACGTCGTGGAGCTGCCGACCCCGTCCAAACGGCGTGTGAATTGAATATTCCGGCTGTTTTTTTGGTGAGACTCTACTAGAGACAGAACTGTGCTGCTCAAGTCACTGTCGTCATACTGCCTTCTGGGTTTCATCTTCATCACCACCATCTTCTTACCGCTCACTAGATCTTCGCCATCATCATCTCCACTACTCACAGGATTGTCCCGTCGTTTCCCTACTCCATTCTCTGAGGAGCCAGGATGGACAGTTTGACCTGCTAAGGGAGGTGctaaaatTTCTACTCTAAAAGCAGAGATCTCCTTGCTTAAAGATGAGTGTGACTTTTTGAAGAAGGGGATTGAAAAGATGAAGTCTGTTGTTCCAACTGCAGTGTCTCAAGTCCATGCTGATCCGACAGTGTCAGATTCTTCAGAACAGCAAGACTCGTGGGATTCCACCAGCTCCTCATCATCCTCGGAgaaagggaagaaaaagaagaaaaaaatgaagaaaccaaggaagagcaaaaaaaaaaggggggaaaaatgtTAACTTATGTCTATATCATTAAAATTGAAAAGTTCACAATCTG
>XR_005636439.1
GTGAGTCCTTAAACTTTCGGCCAGCATGTGACCTGAAGCTGGTCTCTAATTGGTTTCTTAAAGATTCTCCTCCGGACGCACCTCGCTGCGTCCCTGGCAAATCAGAATTGGAGATATGTTATTTTatccaatctgattggttctcAACACCTGTCATTCAACTCTTCCCCCGGCCGCTACTGGAGAGTGAACGTGGACACAATAGTAGCGCCAGCAGGTAGCTCCTGTGTTGTTGAAATGGTCTAACCACTTTGATTAAAGTAGGAAACTAGCAACAATAAACAAGGAGAGATTCTTGAAAGGGTGAAAGAGAAGTTATACAACGTCGTGGAGCTGCCGACCCCGTCCAAACGGCGTGTGAATTGAATATTCCGGCTGTTTTTTTGGTGAGACTCTACTAGAGACAGAACTGTGCTGCTCAAGTCACTGTCGTCATACTGCCTTCTGGGTTTCATCTTCATCACCACCATCTTCTTACCGCTCACTAGATCTTCGCCATCATCATCTCCACTACTCACAGGATTGTCCCGTCGTTTCCCTACTCCATTCTCTGAGGAGCCAGGATGGACAGTTTGACCTGCTAAGGGAGctaaaatTTCTACTCTAAAAGCAGAGATCTCCTTGCTTAAAGATGAGTGTGACTTTTTGAAGAAGGGGATTGAAAAGATGAAGTCTGTTGTTCCAACTGCAGTGTCTCAAGTCCATGCTGATCCGACAGTGTCAGATTCTTCAGAACAGCAAGACTCGTGGGATTCCACCAGCTCCTCATCATCCTCGGAgaaagggaagaaaaagaagaaaaaaatgaagaaaccaaggaagagcaaaaaaaaaaggggggaaaaatgtTAACTTATGTCTATATCATTAAAATTGAAAAGTTCACAATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636438.1 True 895 lncRNA 0.44 4 8531244 8534741
XR_005636439.1 False 892 lncRNA 0.44 4 8531244 8534741

Neighbor

gene id symbol gene type direction distance location
LOC120543718 NA coding upstream 61484 8429225 ~ 8469760 (+)
nyap2a LOC103360223 coding upstream 108908 8399400 ~ 8422336 (+)
LOC120551081 NA coding upstream 224034 8244631 ~ 8307210 (+)
LOC120543907 NA coding upstream 405575 8123625 ~ 8125669 (+)
LOC120551067 NA coding upstream 412598 8115385 ~ 8118646 (+)
rnf168 NA coding downstream 12877 8547618 ~ 8566587 (+)
mindy4b NA coding downstream 724336 9259077 ~ 9275432 (+)
LOC120551113 NA coding downstream 748723 9283464 ~ 9301261 (+)
LOC120543803 NA coding downstream 774458 9309199 ~ 9315322 (+)
LOC120543792 NA coding downstream 774466 9309207 ~ 9329512 (+)
G15487 NA non-coding upstream 27090 8503817 ~ 8504154 (+)
LOC120544094 NA non-coding upstream 47950 8482230 ~ 8483294 (+)
G15471 NA non-coding upstream 52826 8478169 ~ 8478418 (+)
G15461 NA non-coding upstream 94506 8435932 ~ 8436738 (+)
G15448 NA non-coding upstream 167998 8362900 ~ 8363246 (+)
G15497 NA non-coding downstream 45130 8579871 ~ 8602270 (+)
G15498 NA non-coding downstream 51642 8586383 ~ 8596399 (+)
G15499 NA non-coding downstream 52536 8587277 ~ 8638423 (+)
G15507 NA non-coding downstream 155271 8690012 ~ 8700884 (+)
G15513 NA non-coding downstream 216877 8751618 ~ 8911859 (+)
G15415 NA other upstream 358753 8170696 ~ 8172491 (+)
LOC120543711 LOC102298536 other upstream 638771 7858053 ~ 7892473 (+)
rffl rffl other upstream 677815 7806809 ~ 7853429 (+)
LOC120543808 NA other upstream 703157 7826610 ~ 7828087 (+)
G15234 NA other upstream 1039187 7491365 ~ 7492057 (+)
LOC120543817 LOC104967478 other downstream 16850 8551591 ~ 8621654 (+)
LOC120544007 LOC106595375,LOC106565963,LOC106611916,LOC106588692,LOC106572435,LOC106612550,LOC106583987,LOC103477372 other downstream 261329 8796070 ~ 8808975 (+)
G15525 NA other downstream 314760 8849501 ~ 8850871 (+)
LOC120543609 LOC108250351,LOC108250349 other downstream 371989 8906730 ~ 9098564 (+)
G15540 NA other downstream 391851 8926592 ~ 8930270 (+)

Expression


Co-expression Network