LOC120546628


Basic Information

Item Value
gene id LOC120546628
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39794947 ~ 39796770 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636903.1
AACATAAACTTCATACTCCTGCTTTGCTGGAGTAAGGACAGTTACGCCCCCCTCTCAGCCCATTGGTCAATATCTCCGCTGGAATGCGTTTGTCAGCTTTTAAATGGATGTGGCTCGTGTCATTCTGGGCACACTAAACGATGCCGCGTGGGCTGCACCTCATCAGGTTGGATAAGGGTCCTCCAGGTGTCAGACACTTCCCCCAGCAGAGCATTCTCCTCTGACTCCTGACAAGCCCAGTCATgatcctgcctctctctgcgCCACTCATCTGCTCAACCAGCGTTGATTAAGAAGACACCCACGCAGGCATTGTGCAGCACAGCAGGGCAGGTTCAAATGACTCAATTATATTACATGTTGGTAGGATTTTGGCACGTTCTGCTCAAGGAAGTTTGTTGCTGCTAGCCATCCACAGTGCTACTGCTGCATCGCctcctgatttcccaaactacggaGCGGCACGAGGTCTAAATCACAGAACGGGCGTCAAAAAATGAGTGGCATTAAAAGAAATTTGTGTTCACTCGTTATTATCGCACTCATTTTCACAGCCCTAGTTAATATATGTGACTAGAGAAGTCTGAGAATGTTGAAGGGACAGAGGGCCACGCAAAATCTTACAGTGTCTCATTGCCAGGCTCCTATATGATGTTTGTAGGCCTACTGGTTtcacattaaattaaaatgtcagTAATTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636903.1 True 702 lncRNA 0.47 3 39794947 39796770

Neighbor

gene id symbol gene type direction distance location
LOC120546381 LOC103363428,LOC101062185,LOC102204297 coding downstream 17027 39759961 ~ 39777920 (-)
LOC120546392 NA coding downstream 38369 39735716 ~ 39756578 (-)
LOC120546526 tuba1c,LOC101079871,LOC107557552,LOC106676044,LOC105935211,LOC101066234 coding downstream 98342 39693607 ~ 39696605 (-)
spartb LOC101480805,LOC102300300,LOC102204879,LOC102787978 coding downstream 103768 39680280 ~ 39691179 (-)
dclk1b NA coding downstream 120645 39639678 ~ 39674302 (-)
LOC120546419 LOC104923287,LOC104947775,LOC103363426,LOC101479268 coding upstream 71638 39868408 ~ 39901447 (-)
LOC120546408 NA coding upstream 95439 39892209 ~ 39901251 (-)
LOC120546558 LOC103363424,LOC104943694 coding upstream 107342 39904112 ~ 39912760 (-)
LOC120544420 bach1 coding upstream 430599 40227369 ~ 40260253 (-)
usp16 NA coding upstream 463590 40260360 ~ 40268274 (-)
G22773 NA non-coding downstream 83178 39711472 ~ 39711769 (-)
G22772 NA non-coding downstream 93065 39701506 ~ 39701882 (-)
G22679 NA non-coding downstream 563093 39227543 ~ 39231854 (-)
G22678 NA non-coding downstream 567544 39226744 ~ 39227403 (-)
G22658 LOC100690850 non-coding downstream 596462 39197174 ~ 39198485 (-)
G22807 LOC104960197,LOC102301626,LOC103363427,LOC101479746 non-coding upstream 2529 39799299 ~ 39801947 (-)
G22812 NA non-coding upstream 37494 39834264 ~ 39834463 (-)
G22813 LOC104947776,LOC100692726 non-coding upstream 41821 39838591 ~ 39838830 (-)
G22814 NA non-coding upstream 54267 39851037 ~ 39851236 (-)
G22815 LOC103363427,LOC100692726,LOC101479746,LOC102798843 non-coding upstream 56552 39853322 ~ 39853605 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 1059124 38727508 ~ 38735823 (-)
robo2 NA other downstream 1146348 38353024 ~ 38648599 (-)
p4ha3 p4ha3 other downstream 2048665 37732841 ~ 37746282 (-)
LOC120571840 LOC103356713,LOC100701072,LOC102300918,LOC101484608,LOC102193268 other downstream 2096808 37692438 ~ 37698139 (-)
si:ch211-105f12.2 LOC103368707,LOC107379995,LOC102080198,LOC107090084 other downstream 2139152 37651459 ~ 37655795 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other upstream 146801 39943571 ~ 40033156 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other upstream 493235 40290005 ~ 40470176 (-)
cntn5 NA other upstream 2232903 42029673 ~ 42167037 (-)
LOC120574039 nlk,nlk2 other upstream 3439912 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 3904201 43700971 ~ 43716741 (-)

Expression


Co-expression Network